Array 1 707119-708460 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010953.1 Campylobacter fetus subsp. testudinum Sp3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 707119 30 100.0 35 .............................. CAGTAAAGCCATAGCATTTTTTAGAGATAGTACGT 707184 30 100.0 35 .............................. TTTTATTCATATCCTCTTTTGTTTTTTTAATTTTT 707249 30 100.0 36 .............................. CTAAAATCCTCAAGAACAGCTAGGTCAGTTGGTACT 707315 30 100.0 36 .............................. CTAAAATCCTCAAGAACAGCTAGGTCAGTTGGTACT 707381 30 100.0 36 .............................. CGTTGTTGTAAATTTAGTTGTTTGTTTAGACTTAAA 707447 30 100.0 35 .............................. TTCTAAAAGTCGCTATTACCTCTTCATCTCTAACT 707512 30 100.0 36 .............................. TTAGCAAATGGAGAGATAAAATTATTTTTACCCTAA 707578 30 100.0 35 .............................. ATGTCAGAGCATTTATAAAAGCCTAAATTAGGCTT 707643 30 100.0 36 .............................. TCACGTTAAGCCTTCTATAAACGAGAATGAAATGGC 707709 30 100.0 35 .............................. TTTATCCCAGCCATACCTTTCACATAAGGTAATGA 707774 30 100.0 35 .............................. TTTTTGGTATGCGCTCACCCTCTTTTAAAAACTCC 707839 30 100.0 37 .............................. ATAGCAAATGAAGATAAAATTATTTTTACCCTAAAGC 707906 30 100.0 36 .............................. TAAAATCCAACGTAATAAGGTAGCTTTGTTTCTACC 707972 30 100.0 36 .............................. GATATCAAAACAAGATTATTGAAAAAGGAAATAGAA 708038 30 100.0 36 .............................. TTTTATTTTCCAAAAATGGCAAGAAATACCATTAAA 708104 30 100.0 36 .............................. ATGATAACACTACTAAACCAGAAAAGCCAACTGATC 708170 30 100.0 35 .............................. TCTGATCCTATTATTTTTGACGATTATAAAATTTC 708235 30 96.7 35 .............................T AACAAATAGATTGGTTTTGCCGGTTGATATCGTAT 708300 30 96.7 35 .............................T AACAAATTGTCTTCTATATTTTTGCCCATAGCAGA 708365 30 96.7 36 .............................T ACAAAAAATGTACCGCTAGTGTCTATTAGGACCTCT 708431 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.5 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TCATTTTCTCTTATATTTTTCTCATATTCCTAATTCAAATTTAAATAATTAAATTTAGATAATTAAAATCCAAATTTAAACTCAAATTTGAATAATTTAAATTCAAGTTCAAATTCAAGTTCAAATTTAAGTTCAAATAATCAAATTTTAAATTTAAATAATTAAAATTCAAGTTCATATTAATAACACTATTTACACACCAACAATCACAAATTTATATTTTATATTACATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAAACATAGATAAATAGTTTAAATTTAATGTTTTTTATGATATTTAACTTATTATTGTTATTTTTTAAATTTAGATTGGAAAATAAATTTATTTTTATTATTTATAGCTATATTATATATAAAACAAATAATCCATTTTCAATAGTTTTAAATAGTTTTTTAAATTTATTTCTTATTTTAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATG # Right flank : CTTGTCGAATGCCTCTTCTACCACTTCTAAGTAACCAACTTGAAAATACACTTTATAAAAAAGCTGAAATTTATTAAACTATTTTTCAAATGGTAAATTAAAATAGTAAAAAATATAATTTTGAAAACTTAGGCAAGAGGTTATTTATATAAGATATATATAAGTATATATAGTATATAATAAAATAAAAAAGGATAAACTATGAAAAGCTACTGCTTGAAGTTAGATGATGACACATTTGCACAATTAAATCAAATCGTAAAAAATAGCAAAACAACTATGGCTGAATTTATCAGAAATGCACTAGATCAAAAATTAAAAGAAACCAAAGGTTCGCTATCATACAGGCTAACTACGCTTAGTTACTGCGATAAAAAAGAGAGCGACGAGATACTAGATAGTGTAAAACATCTAAACGACGACGAGTTAAAGATAGCCAAAAAAGAAACCATAAACTTATGAAGCTAGAAATCAACTATACCAAAGTTTCTATAAAGTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 713110-714580 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010953.1 Campylobacter fetus subsp. testudinum Sp3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 713110 30 100.0 35 .............................. AAGCGTAGCACCAAAAGAAGCGTATGAAAGCATAG 713175 30 100.0 36 .............................. TAACTAGTGGCAAATGGGCTAAGAGTTTTTATAAGT 713241 30 96.7 35 .........................A.... TCTATCATTTTAAATTTCCTTTTTTTATTCTGTTT 713306 30 100.0 35 .............................. TCGGACTTTTTAAATATTTTAAACAAAATGACTGA 713371 30 100.0 35 .............................. AAGAAATGCTCAAATAACTTGTACATTTCTTTTAA 713436 30 100.0 35 .............................. ATAGAAAGATAAACTTTTGTAGGAGATACAAAATA 713501 30 93.3 36 ...............G.............T AGGATAAAAAGCTATACAAGCAAAGCAAGACAACTT 713567 30 100.0 36 .............................. TCTGTTATTTTATACTCTACCCCCGAGTAAAGAAAT 713633 30 100.0 35 .............................. TAACTAGTATCTATAAATGACTTCTTAAGTACTTT 713698 30 100.0 35 .............................. TAACTAGTATCTATAAATGACTTCTTAAGTACTTT 713763 30 100.0 36 .............................. TTTAATTTGCTTAAGAACATATTTACCGTATTATTT 713829 30 100.0 35 .............................. CAAAAATACTCTTTGCACTCCTCTTTACTAAGCCC 713894 30 100.0 36 .............................. CTGGAAAACTCCTCCGTCTTAAGCTTTACTTGTGCT 713960 30 100.0 37 .............................. ATCTTTACAAGCACGTCTCCCTCATATATTCTAATCC 714027 30 100.0 35 .............................. AAAGGAGCAAGGGCTTGGAAATGGTTTAGCAATCT 714092 30 100.0 35 .............................. GAATATAAAAGAATTGCTGAGTTTTTTTATAGGGC 714157 30 100.0 35 .............................. TGATATTCAGTGACGTTCTAAGCGTTGTTGATACT 714222 30 100.0 35 .............................. ATAGCATTGTGATAGTGTTTCCTACGTTTAAAGGC 714287 30 96.7 36 ...............G.............. CACATAACATAATAGCTGATATAAACTACAGATATA 714353 30 96.7 36 ...............G.............. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 714419 30 100.0 36 .............................. TCAAATACCGCTTTGGATATATAGAAAAATTAACTT 714485 30 100.0 37 .............................. CTAAGACTTACACCTGTTTTTGATACATTAGAAAACA 714552 29 73.3 0 ..........C....AGC.C..-..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 23 30 98.1 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : AATTATTAAATTTAGATAATCCAAATCCAAATTTAAACTCAAATTTGAATAATTTAAATTTGAGTTTTAATTCAAGTTCAAATTTAAATAATTAAATTTAGATAATTTAAATTTAAATTCAAATAATCAAATTTTAAATCTAAATAATTTAAATTTTAAATTTAAACTCAAAATTCATATTAATAACACTATTTACACACCAACAATCACAAATTTATATTTTATATTACATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAAACATAGATAAATAGTTTAAATTTAATGTTTTTTATGATATTTAACTTATTATTGTTATTTTTTAAATTTAGATTGGAAAATAAATTTATTTTTATTATTTATAGCTATATTATATATAAAACAAATAATCCATTTTCAATAGTTTTAAATAGTTTTTTAAATTTATTTCTTATTTTAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATG # Right flank : TCACATAAAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAGTGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGCAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGCGTTGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAGAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAAAATAACAAATATATAAACGCTTTCAGTGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTTTAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAACGCTTCAATAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 3 725137-726553 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010953.1 Campylobacter fetus subsp. testudinum Sp3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 725137 29 100.0 37 ............................. TAATTCTCTTTATAGGGATAGATGTATGAGCGAAAAT 725203 29 100.0 37 ............................. TATTTTTGACGAATGTGATCCAGACGGAGATGCGGAA 725269 29 100.0 37 ............................. TCATTTATTAGTTTTTTCTCTAAAGCCACCAGAGCGT 725335 29 100.0 37 ............................. TTGCTCTATAAGACCATTTTGTATAAAATGGTGGTGC 725401 29 100.0 38 ............................. TACAAATATTTTTGAAAGCAAATACTTTGTCAAAATTT 725468 29 100.0 38 ............................. TCTCTGTGTAGAATTAGAAACAATATTTGCAAATTCAA 725535 29 100.0 37 ............................. TTTGCTATTTGCAAATTTTGCAGGGACGGCTTTACCA 725601 29 100.0 38 ............................. CTTAGCTCTTGCGATGGCTTTATCAAAATTCATATTTA 725668 29 100.0 37 ............................. CGTTTTTTCCTTTAAAATATCGTGAGCTTCCTCTTCC 725734 29 100.0 37 ............................. CTCGCCTATGAACAGAGCTAGTCCGTTTTCATTTATT 725800 29 100.0 37 ............................. CTTGTAGATCCATATTGTTATTTCTACTTTACATTTT 725866 29 100.0 37 ............................. CACTTTAGTATTTAAATAAGCCGTATTAAAAGCGTTT 725932 29 100.0 36 ............................. CAAAACATTTTTAGAGGCGTCTTTGGCTACTGCTTC 725997 29 100.0 36 ............................. CATGAAATTTCCGTTGATATAAAAATAAGTTTAATG A [726019] 726063 29 82.8 5 ..................A..ATA.C... TTTAA Deletion [726097] 726097 29 100.0 36 ............................. CATGATACAAAGCGTGGTTGGTAGATATTATATTTC 726162 29 100.0 36 ............................. CAAAACATTTTTAGAGGCGTCTTTGGCTACTGCTTC 726227 29 100.0 37 ............................. CACGAAATTTCCGTTGATATAAAAAATAAGTTTAATG 726293 29 82.8 5 ..................A..ATA.C... TTTAA Deletion [726327] 726327 29 96.6 37 ............T................ CACTTTAGTATTTAAATAAGCCGTATTAAAAGCGTTT 726393 29 100.0 37 ............................. CCAAAGCAGGTTTTAGTTCATCACGTTAAGCCTTCTA 726459 29 100.0 37 ............................. CTTGTCGGCATCACCGCAATGAACTATTGTATCTACA 726525 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 23 29 98.4 34 GTTTGCTAATGACAATATTTGTGTTGAAA # Left flank : AATTATTAAATTTAGATAATCCAAATCCAAATTTAAACTCAAATTTGAATAATTTAAATTTGAGTTTTAATTCAAGTTCAAATTTAAATAATTAAATTTAGATAATTTAAATTTAAATTCAAATAATCAAATTTTAAATCTAAATAATTTAAATTTTAAATTTAAACTCAAAATTCATATTAATAACACTATTTACACACCAACAATCACAAATTTATATTTTATATTACATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAAACATAGATAAATAGTTTAAATTTAATGTTTTTTATGATATTTAACTTATTATTGTTATTTTTTAAATTTAGATTGGAAAATAAATTTATTTTTATTATTTATAGCTATATTATATATAAAACAAATAATCCATTTTCAATAGTTTTAAATAGTTTTTTAAATTTATTTCTTATTTCAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATG # Right flank : ACAAGTTCTTTTTTTAATGGAAATGAGATAGTGACTTGTTATAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAAGAGATCACTATATGATAAAAAAGAGGTGATAAAATGGAAAATCGTAAACTTATTATAGGGTACTATGGAATAGAATGGGCTATAAAAGTTCCTGACTATGATGATAAAGGAACAAAAGGCTTAGGGATTATAGCCCCCATAACTTCAGTAAAAGACGGCAAAATAGTTGAAGTATTCGATATCCTTACTCCACACAAAGAGGATATAGATGATGCAAAAGAGTATAAAGAATTCTATGAGATCTGCGATTTTGAAGTACCACAAACTAATCATAAATTCACAGGCACTTTTATAGACGCTTTAGAATATATAAAAGATACCTTTAATCAAGTTTCAAAGACTGTTTAACATTTGACGGCGACAGGCTAATAACAGCTTTTAAGCCGACGCAAGGATATATCAAGATATTTCAAA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //