Array 1 692701-693318 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024111.1 Bacillus cytotoxicus strain CH_4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 692701 29 100.0 36 ............................. TATGCCGTTGGTTCCAGGAGAGCGCGAGGACTTTGA 692766 29 100.0 37 ............................. CTTAAGAAAGGAATATTGATTATTGAAAAATGGTTCA 692832 29 100.0 36 ............................. ATGAGTTAATTCTTCTAAATAAAACGGTTCGCTACA 692897 29 100.0 35 ............................. TGCGTCGAGTCCTTCTAGTACAAAGCCACCTTCAA 692961 29 100.0 36 ............................. ATGTTTTCACCTCGATTTTATGATTTGTTTCATTTG 693026 29 100.0 37 ............................. GGAAACGTCTCTGTTTTAGACGACACTAATTTCAGTG 693092 29 100.0 36 ............................. GGGATGTTTTTCTTTGCAATCGCTCCGTGAAATCCT 693157 29 100.0 37 ............................. TTGACTGAGCGTTCAAGAAAGTAGCATGTTTGTCCCA 693223 29 96.6 36 ............................T CCAATGTATTCAATGGTTTTTGGACATTGTTAGAAA 693288 28 93.1 0 ..................-.........A | AAG [693311] ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.0 36 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : CGTTCTTGTGAAAAAGGTAAGAAGAGGAGACGAAGAAGTCGTTATTATGATTCGCTGGGAATCTGAAGAAGCATGGAAAAATTGGGAGACAAGCGAAGAACATTTGGCTGGTCATCGTGCAAATCGCGGAAAACCAAAGCCAGAACATATTTTAAATGCTGAACATGCTGTTTATTATGTGAAAGCAACGAAATCGGCTTATCAGCAATCATAATGTGGATGAAAAGGGGGCGATTTAGCCCTTTTTTTAATGATTAAAGAATTCTTTTCTTAAATGTAGTTTTGTATTATATTAGAAAATAAGAGTGTACCTATACCAATACTCATTTTGCAGCATATCAATTTTTGAAAGAAAGGAGTCAAAACCCTTATGTTTCAAGGGATAGACTTTATTTTTGAAAATGCATATGAAACAAAACTAACAGTGTGCTGCAAAACTTTCAGTGTATTATATAATAAATGTATTGATTTTAAAGAGAATTATGGTGATTTTTTATAGG # Right flank : AAGCTTCAGATGATAATAGTCCTTCTAGGGCATAGCTATCAACTTTAGAGAAGTGCTTCCCCTAAAAAAGTATCGGGACACTTTTTTGTAATCTTTGAATGCAATCCTGGATTTTGGGTATATTCAAATAGAACTTCCTATGATATATATTTTATGGCGCTATTTGAAGCCGATTCGCTGATTTTTCTATGTTTTGTTTACTGATAGCTTGAAAGAGGTTGCTAAGCACTAAAACAGGGGGGGAAGTACAAAAAAGTTGCGGTGTATATTTTTTTGATAGATTTGCACCATATAAGCATATTTCAACTTACTCATTTTTTCCTTGTGTCTCTCATAAAGGTCTTTGTAGTTGATAGGTGTAACGCTTGCAAATAAACATAAACGCAAGGAGTATAAATTTATTTTAAATAGAAGTTCTATTTGCTGTCGTAATGAATAAAAAGCATACACTTCTGTGAGAGGATACTGAAAAATGGTGGTTTTGAAAAATAACACGCATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 702988-703475 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024111.1 Bacillus cytotoxicus strain CH_4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 702988 29 100.0 36 ............................. TTGTGAGCCGTGAATTAAGACATATCGTCCATCACG 703053 29 100.0 37 ............................. TCGAATACGAAAAACAAATACTACAGCTTTTAAAAGA 703119 29 100.0 36 ............................. GTTTCTTTCGAAGGTATGTGTACGAGAGGGTCCTAA 703184 29 100.0 37 ............................. TTCTATGAATATGAGGATATTGTAAACGATAATTCAA 703250 29 100.0 36 ............................. AACGATTCGTCACTCATATCTGGTACGAATGAGAAC 703315 29 100.0 37 ............................. GTAATATTAATTGGTATCAGTCTAGGCGGCTTTATTA 703381 29 100.0 37 ............................. TCATCTGCATCTAATTTAACTGTTTTTGATTTTGATG 703447 29 93.1 0 ....................A...G.... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 99.1 37 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : TGGTGGTAAAAAAATGTTTGTTATAATTACTTATGATATTGGAGAAAAAAGAGTAGGAAAAGCGTGCAAGAAATTAAAACAGTATTTAACTTGGACGCAAAACTCTGTTTTTGAAGGAGAATTATCTAGGACACAACTCTTAAAATGCTTAGCTGAATTAGATCAGATTATAATATCGAGTGAGGATTCTATTTACTTATATGAAGTAAATAATCCACGTAATATAAAGAAAAAGGTATTTGGTATTGAGAAAAGTTACGAAGAGCTATTTCTCTAAACACGATTTTATAATATATTAGGAGTAGTTTTTTTCTTATTAGTGAGAAGTTTGCAGTGCATCGTTTTTTAGCGAGTAAACTGCCAACCTCTTGTCTGTTAAAGGATGGAGCGTATTTTTGAAAATACTTTTGAAACACGACTCAACATCCGCTGCAAGATTTGGAAGTCTTAATGTAATGTGTTCCTTGATTTAAAAGGGATTATAGTGTTTTTTTATAGGG # Right flank : GGCAGTTTTCTTATGGTTAAATAACCCATGGAAACAAAATTAGTCGCCATTTATGCTTATCTGAGCGGTATAGAACCTTTTAAAATAGTGGCTAGTTTTTTAGAAAAGAAAGAAGTTATCGTGAACGAAACTAGCTCCTTACCCGTAATTTCGTAGGTTAATTTGGTTACACTGAATAACTATAAAAAGCAAACCAAATCAGAGCTACATTACGAAAGGAGCTAGTTTATTATGAAGGATACCACAAAATACGTAGGTTTAGACGTTTCAAAGGAAAAAATTGCTGTTGCTATCGCGGATGAAGGAAGAGAAGAACCTAGATATTTAGGAATGATCCCTCATACACCTGAATCTCTAAGAAAGCTGATAAAAAAATTAGGTGCCGTTGAACACCTAAAAGCATGCTATAAGGCTGGTTCAACTGGCTATGGGATTTACCGCTTACTTTTCAGCTTAGGAGTAGATTGCGCAGTGATAGCTCCCTAAAAACCTGGAAATCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 831857-831163 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024111.1 Bacillus cytotoxicus strain CH_4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 831856 36 100.0 30 .................................... TTCGATGTTTATCCATCCACTCTTCGACAA 831790 36 100.0 30 .................................... TGTTTTGGGTTGCCGATGTAGAAGTAAAAA 831724 36 100.0 29 .................................... TACAAAAAGTGACTGAGGGGGCTTATAAC 831659 36 100.0 30 .................................... AGTGCAAGCAATCAAAAAAGGTGCAATTGA 831593 36 100.0 30 .................................... TGAAAATTTCGGTAATGTAAAGGTGTTTAG 831527 36 100.0 30 .................................... TCAGCACGTCTTTATTACAGGACAAACGGG 831461 36 100.0 30 .................................... ATTCCAATCGATGTATGGTGTGAGGAAGCT 831395 36 100.0 30 .................................... GGTAGCAATCTAAAGCTATCATGTAGTATA 831329 36 100.0 29 .................................... TCGTCTTCCTCTACTTTTGGTTTCGGTGG 831264 36 100.0 30 .................................... TTTAATGATGTTGATAAGTTGCCCCGCATA 831198 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GCCATAATTCCTCTTTAAATCTTGGTATGATATGAT # Left flank : AGTCCGGTAATCGTGGAGGAGAGAGGAGATTCCCCCTCGACCTCTCACACCACCGTACGTACGGTTCCGTATACGGCGGTTCAATTAAGTCTGACGAATCATTGAATATCTATTACTCAAACTTTTAAGACCTAGATATCCCCAGTAGGAATTGTCTAGGCTTCTTTTCGTATGCTGTCTGTTTGGCGATACTCAAAAATTGGAGTTTCTTTCTCCTTACCCTTGATAATTTTTATTGTTTCCATATAACCATTCGGAGCCTTCTTCGAATCCACTTGTCTCGTTCTTTACATATAGACGGCGTGTCGCTTAATGCATTATATCCACACCATCCAATTAGATATTTGTAGATGGTCAACCAAATTTGCCCCACCTTTGTCACTGAAAACTGACCCACCTACTCTTCCTTCGTGACTAATCGTACTTTCATTCTGTAGCTATTTCCGTTAATATTAAAAATATGACAGTACTGAACAAATATTTATTATATGCATTTTTAA # Right flank : ACATGCACCGAAACCTCTTGATATTCCTCAGTTTCAAGGGGTTTCTTTTTTAAAAAAACGAGTTTAAAAATGCTCTTTTGGTTATTTTCGTGCTAAATTTTTTTCATATTACGTCAAAACAAAAAACACTTGCTAAAATTGCAAGTGTTTTTTGTTAGAAAAAGTCCGTTTTATTTGTTCCTAATTTTTCATCAATGGTTTGAACACCAAGTAAAATATCCATACTTTCAAATTGCTTTTCTGTTACTTTTAATGAACGGATTGCTCCATTTACATTTGGAATGTTTTGCCTAAGTCTTCTCAAATGTTTTTGAGCACCTTCTTCTCCATTACAAACTCTTGTGTACACAGAAAATTGCAGCATTGTGTAACCATCTTTTAATAAAAATTTTCGGAAACGGGTGTAGGCTTTTCTTTCAGCTTTTGTCATCACCGGCAAATCAAAGAAAACAAGTATTCTCATAAATTTACTCATACGTATGTTGCCGTAATGCAATCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCTCTTTAAATCTTGGTATGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //