Array 1 2646-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQYO01000229.1 Xanthomonas sontii strain PPL1 PPL1_contig_229, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2645 31 100.0 33 ............................... TCCTGCAACTGCCGGCGCTCGGCTTCGCGCCAC 2581 31 100.0 35 ............................... TTGGAGTTATGGCCCAGGTACTCGAAGTCGCGGTG 2515 31 100.0 35 ............................... TTTTACGGTCGGATTCAAGGTTAAGCGCCATGCCG 2449 31 100.0 36 ............................... TTCAGGCTGGCCAGGAAACAGTCGCACAGCGCTGCC 2382 31 100.0 36 ............................... ATCCAGCTCGTCGTAGGTGCGGCGGATCAGCAACCC 2315 31 100.0 34 ............................... TGGAAAACGCAGCTCTTGATCGTGGCGCGCGCAG 2250 31 100.0 34 ............................... TGCCAGTTCGGCTGGCCATTCCGACTCTCGCCGC 2185 31 100.0 34 ............................... GCATGCACGAGGCGGGGCTGCACGTCGTAGGCCA 2120 31 100.0 33 ............................... GCGTCACCACCGGCAACATCGACGGCGGCGAAA 2056 31 100.0 34 ............................... CACCGTCGGCGGTACCTTCGTCGTGTCGTGGGTG 1991 31 100.0 36 ............................... CTTCTCCGCGGCGACCTTAGTCGCCACACCATCACA 1924 31 100.0 34 ............................... CAGCTATCGACCGCTAGTTTATCCAGGTACGACT 1859 31 100.0 34 ............................... GGCCAACCAGGCGAACATGCAGCCATACTTGGAC 1794 31 100.0 35 ............................... AATAAGTAGCGCGGAATGAGCAGCCGCACCGAGTG 1728 31 100.0 36 ............................... CAGCATGGTGCGCTGTACATCCCCGCGGGCTCCACC 1661 31 100.0 34 ............................... TGCTTCTTGTCGGGGGTGTGCGTGGGCGTTCTTG 1596 31 100.0 35 ............................... CAGTTCGGCATGCCCATAGCCGTCACGGCGCGGTT 1530 31 100.0 34 ............................... CAAAACGCGGATGCGCTCGCCCATCGCAGCGTGT 1465 31 100.0 35 ............................... TGGTCGTACCGCTCACCGATGGCCTCGGCCACGCG 1399 31 100.0 34 ............................... TTCTGCAGCGACGCAACACCTGCCAGGACTAAGT 1334 31 100.0 34 ............................... GCCGTTGTCTTCGCCGCCCTTACCGCGTGCATGT 1269 31 100.0 36 ............................... CTGCGTCCTCCTCCGGGCCGGCATCGCCTTCGAGCG 1202 31 100.0 36 ............................... TATCGTTCCAGCGCGCCGATCATCGACGCCAACGGT 1135 31 100.0 35 ............................... AAAGAATTTTTGCAGGACTGTGTGACCTGATTACC 1069 31 100.0 35 ............................... CCATCTGCCAGCACTGGTTCGGCCACCGCGCGCGC 1003 31 100.0 34 ............................... CTCTGGAACAACGATCGCTGATTCGCTGCTGAAG 938 31 100.0 35 ............................... CCGCTCAACAAGCCGGTGCTCGTCACCGACGTCCT 872 31 100.0 35 ............................... CTGTACGAACCGCGGCGGCGGCCGCTGCAGGCGGT 806 31 100.0 34 ............................... CCGTTGTCCACGAAATAGCTGGCGCCGCCGCTGC 741 31 100.0 35 ............................... ATGATCCACAACGCGTGGACGATCGCCGTCGGCAA 675 31 100.0 36 ............................... TTCGCTGCGGCGGTCAGGGTCATGCGTAGTCTCCAT 608 31 100.0 35 ............................... ATCTCAGCGACGGTCTTCAGCAACTCGTTGCAGGT 542 31 100.0 35 ............................... TCACCAATCCAGCCAAGTACTACCGCGGCGCCTAC 476 31 100.0 34 ............................... GGTCCACGACTCATGCAGCGTCACCGACGCCACC 411 31 100.0 35 ............................... CGGATCGTGGTGGCGGCGCCCATCGTGTAGCTCTT 345 31 100.0 33 ............................... CTCTCCACGCTCGCGTCGCCGCCTCCCATTTTC 281 31 100.0 34 ............................... ACGTACAGTGCTTTTTCACCGACTACCGGGTCGT 216 31 100.0 35 ............................... GATGCACGGTCGTGGTAGATGGAGTGATGTACGAG 150 31 100.0 35 ............................... TTGCTGCGCCATTCCTCAACCAACGCACGCAACTG 84 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 40 31 100.0 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : CGAAGATTGCGCCGAACTGCACACCGCAGCACCGGCGATCCTGCACCGCCGCGCGCCGACGCTGGTGGCGGCGTTCGCGCAACGCGGCTGGGCACTGCCGGAACGGATCGATCGCGTCTATTCGCCGCAACGGGCGCTGGACGCACTGGGCTGGCAACCGCGCCATGGTTTCGCGGAAGTGCTGCACCAATACGACACGCACGTGCCCGAGGTACTGCCGCCCAACGACGGGCGCGCCGTCAGCGACTGAGCGCCTGGCGCTGATCGGCACACCGGGTTCGGATGGCGGAGCAAGGATGTGCGCCGTCGGCGCGAACCGGAAGCGCCCGGGGTTTTCCCGGCCGGTTCGCGAATCCCGATAAGCACTTGATCGAAAAAGCGAAATGCCTGGGCAGCGTGAAACCTGGCAAGGCAGCCCCGCCCCCTGCACGTCGCCGCACGCCCGTTCCGCGAAATCGGCACTTTTTCCTTAGTCCCGGCCGGCAGTTATGCTGAGGGCT # Right flank : CGTAGATCAGCCTGACGAGCCGCGCATAGCGCGGGCGTCGCGCCCTCACGGGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 74-430 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQYO01000108.1 Xanthomonas sontii strain PPL1 PPL1_contig_108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 74 30 83.9 35 .........C....C..-.A.....G..... CACCCGATCCCGCCAGGTCCTGCCGCGGCGCCTCC T,C [77,87] 141 31 93.5 34 ..........A..................C. GGTTCACGACTCACGCAGCGTCCCCGACGCCAGC 206 31 100.0 35 ............................... GCATCGGACAGCGGGGAGAATAATCAGTGAGCGCC 272 31 100.0 34 ............................... CTGGCTTGCAAGATCGACGCGCTGGTCGGTTCCG 337 31 90.3 32 ..........T..A....T............ CCCTTGCCGGCAGGACTCGCTCACGCATGCCT 400 31 71.0 0 ...C....A..CAA.....C...G.G...C. | ========== ====== ====== ====== =============================== =================================== ================== 6 31 89.8 34 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : CCCCCTCGTCGCCCGCTCACACGGCGCCTCGTCGGCTCACGCCCACGTCGCGTCTCCCGCTCCTCGTGCACGGG # Right flank : CGTGCAGGCCCTTGGTTGCGCGTAGGCGCGATTCACGACATCACCGCACCATTGAACTCAGCGCAGCAACACCGAAATGCCGAGGCCGCCCTGCCAGTCCGGGGTCTGCGACGACAGGCCGCGCAGCACCGACAGATCCAGTTGCACGCGGTTGGCGAACAGCCAGGTGACGCCGCTGCCAAGCGCACGCATCTCGTCCTCGCCGCCGCCGATGCCGGCCTCGACGTAGGCGCTCAGCGTGTCGCCGGCGTAGAACGTGTAGCTCGGCGAGATGCTCCAGCCGGAGCCGTCCTCGCTGTCGCTGACATTGCCGTACAGCGCCAGGCTGCGCCCCTCCGGCAGGTCCCAGCCGGCGCTCACGCCCAGGTCGTAGCGGTGGCCGGCATCGCCGTACGGCGCGCGCCCGACCGGCAGGCTGGCGCTGCCGAGCAAGGCCCAGCTGACGCGGTCGCTGGCGCTGGGCAAGGCCTGCTTCAAGCCGATACTGGCGTCGCCGCCAC # Questionable array : NO Score: 8.44 # Score Detail : 1:0, 2:3, 3:3, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //