Array 1 43954-46501 **** Predicted by CRISPRDetect 2.4 *** >NZ_QECD01000001.1 Vibrio cholerae strain OYP4D09 Vc_OYP4D09_Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 43954 28 100.0 32 ............................ TTTTTCAAAATACCAAAACAGTCCTGAATCTA 44014 28 100.0 32 ............................ TTTTGGCATGGCGAAGAGTCAGAAGTTTTCGC 44074 28 100.0 32 ............................ TCTCCAGACACGCCATCTTCTTGAATTAATCC 44134 28 100.0 32 ............................ TCACTTAATGAATTTTTTCTTTGCCAGAATTG 44194 28 100.0 32 ............................ ATCCTTTTGCTATCCGTTTGCCATCCATTTGC 44254 28 100.0 32 ............................ TCTTACTGACGAGCAAATAAAGCAGCTTGGTT 44314 28 100.0 32 ............................ AGTCGAGATTTACGCAGGGGTAGCCCGTCTAA 44374 28 100.0 32 ............................ ATTAAATTAAGAGTGCAACATTTTTTAGCATT 44434 28 100.0 32 ............................ AATATAAGCTTCTGGTGCATCATGCAAAAGGC 44494 28 100.0 32 ............................ GGAACTGGAAAAACCCACTTAGCCGTGGGTAT 44554 28 100.0 32 ............................ TCTCTGGCGCATTTGCATGAGCTGTTGCAGTA 44614 28 100.0 32 ............................ TCAAGCAGAAACAAGATCCGACGCATCTCTGG 44674 28 100.0 32 ............................ TTTCTTGGTGTCTAACTCCACTACTGACGGCG 44734 28 100.0 32 ............................ TAACACGCTTCCGGTTTGCACTCGTGCCGGTG 44794 28 100.0 32 ............................ AGATTCACGCGCTACAGACTGAGCGCTCGCCT 44854 28 100.0 32 ............................ AATCACATCGCCAGCCGGAATCATAGGAAGCC 44914 28 100.0 32 ............................ GATAGTACGTTTTGCAAGGTACGCCGCGCTTC 44974 28 100.0 32 ............................ ATCTGGCAGTAATCGCCCATTGCCACGGCCTG 45034 28 100.0 32 ............................ AGTAACCACTAAATACCAAGCCGGATTAAGAA 45094 28 100.0 32 ............................ GCTTTGCGGCTGTTCTTGTATTCGAGCTGACA 45154 28 100.0 32 ............................ TTTGTTCATGCCCAATGCGCCATCAACGGCTT 45214 28 100.0 32 ............................ GTTATCGGCGATTAACGGCGTTGGCGGCTCTG 45274 28 100.0 32 ............................ TAGATGTAGTTATCAGGGTTTAGACCAAATGC 45334 28 100.0 32 ............................ TCTAGCTTTAATAGCAAAGAGTAGCATTGAAC 45394 28 100.0 32 ............................ ATTAGTGGTTAGCTTTTTTTTCGCCCAACGAT 45454 28 100.0 32 ............................ TTCAGCGATAGCGACGGGACTTTTCTCACAAG 45514 28 100.0 32 ............................ TCGAATTGATAACCCATCTTTTCTAAATCTAT 45574 28 100.0 32 ............................ GTTGATATGGATGGATAGGATCGTAAATCCTA 45634 28 100.0 32 ............................ TTTATGTTAAAGCACCCAAATCCATCGCTTTT 45694 28 100.0 32 ............................ AGTTCTAATAACAAAACCGCGCAGTTCGATAG 45754 28 100.0 32 ............................ AAAAATCTGACCTTCCCACAATATTCGGCATT 45814 28 100.0 32 ............................ TAGCATTTGCAAAATGCCTCTGTAGCCTTGCA 45874 28 100.0 32 ............................ TAATGCTCATTTCAATAGTCTTAAAATGCACT 45934 28 100.0 32 ............................ AAAAAATCAGGGAGTGGGGCGCAAGCTTCGCG 45994 28 100.0 32 ............................ TTAATAGCCGTGATCGCCATGCGCCAGATTGG 46054 28 100.0 32 ............................ TTTACGGCATAGTCATATAAAACAAAATCACT 46114 28 100.0 32 ............................ ATTGCCGACTTTGACGCTGCGCTTTTGCTGCG 46174 28 100.0 32 ............................ TCCCACTCAAAATCTTGTTCAGAATTCCATTT 46234 28 100.0 32 ............................ TTATCTATGATTAAAGACGCTCACGACCGCCT 46294 28 100.0 32 ............................ TGTAAAGCAAGCATGTTTAACGTGCCATTCTC 46354 28 100.0 32 ............................ TTCATCGGTAATCAAGGACACTTTGGGATCAA 46414 28 96.4 32 ...........T................ ATGCCTTTGGATCGTCGTGAAACTTGCGGTGT 46474 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 43 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACCGCGACAGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTATGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCACATCATTGGTTTTCTACGTTCGAGATAATCCGTGCGGTTATAGGCACTTCGAACTTGGTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //