Array 1 3391-4336 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJGI01000020.1 Corynebacterium diphtheriae bv. mitis str. NC03529 contig20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3391 29 96.6 32 ............................T GAGGTCTGCTAGGTCATTGTCGGTGTACCCAG 3452 29 96.6 32 ............................G CCGCGCATAGGTATCCGTCTCCTCGGCACGAT 3513 29 96.6 32 ............................T CGTTGACCGTGCTACCGACATGGCTTCGCCCA 3574 29 96.6 32 ............................G CATGGAAAGCCGTTATTGCTGACCATAACGAA 3635 29 100.0 33 ............................. ATCTGGTACGGCAGTGTCTCCTCGGGTAAAACG 3697 29 96.6 32 T............................ CACCAACAAAACGGGAGACAAACACATGGGAA G [3713] 3759 29 100.0 32 ............................. TCCTGCCCCGAGGTGACGTTCACATCCAGCTT 3820 29 96.6 32 ............................G CCGCGCATAGGTATCCGTCTCGTCGGCACGAT 3881 29 100.0 32 ............................. TCCTCGAGGCTGATCTCACTGTCCGTGACGGC 3942 29 100.0 32 ............................. ATGCCACAACACAAAGACCCAAGGCGAGGCAG 4003 29 96.6 32 ............................G CTGTGTGGCGTTGCCACGGTGATGTGTAGGTT 4064 29 100.0 32 ............................. CTCTCTTTTTATCCTTTTGAGGTCCTCTATCG 4125 29 96.6 32 ............................G AAAACCAATACTCCTACAGCTGGAACGACCAA 4186 29 93.1 32 .............T..............G TTGTTAACGGATCCACGAGACACACCCAGTAT 4247 29 93.1 32 .............T..............G TCATAATCAGCACTGTCAATCCTCATGTATTG 4308 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.2 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAAAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAAGACTAAGCAAATTTGGGTGAATAGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGTCTCTAAACATGCAGCTTGATAAGA # Right flank : CAGGGACTTTGAGAACTGGACCGCCGTGATTCCCTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGAATCTGTGTTTTTCATTCAGAGAAATCAGTAAATGATGGCTCTACTAAAAAATTTTGAAAAAACTAACTTTTAATATCTATAGAGTGTATTCTGTGGAAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGATGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCGGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGCTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCGTCTTGCTCGAAAAGGGAAAGATCAG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //