Array 1 1-900 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCQJ01000208.1 Salmonella enterica subsp. enterica serovar Kentucky strain SEN865 KENTUCKY_S18_trimmed_contig_224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 1 27 93.1 32 --........................... CGCCCCTCACCACCGTGGCCGCGTGCCGTTCG 60 29 100.0 32 ............................. GCAACTATGTTTAACGCGGCCAATAACGATTT 121 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 182 29 100.0 32 ............................. ATTTTCCTCTTGATCCGACTGATAAAACAAAC 243 29 100.0 32 ............................. CCAGTCTGTATGAGGCTGCGATTGTGTGTTTT 304 29 100.0 32 ............................. CCAGTCTGTATGAGGCTGCGATTGTGTGTTTT 365 29 100.0 32 ............................. GTCAACGCCAATGACCGGGAATTATCCCGGAA 426 29 100.0 50 ............................. TTTCCGCTCTCTCTCGTCCATCATTCCGCGCCGGCATAACTGACGATCAG 505 29 100.0 32 ............................. GCGCGCAACCCGGCATTTCACAGAAAATTTTT 566 29 100.0 32 ............................. CTGGTCCCGCGTGTATACCAGTATTTACCGTG 627 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 688 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 749 29 96.6 32 ..........T.................. GCGTATGAGCGCCCAGCAGCGAACGTGAATCT 810 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCAT 871 29 96.6 0 ............T................ | A [898] ========== ====== ====== ====== ============================= ================================================== ================== 15 29 99.1 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1185 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCQJ01000216.1 Salmonella enterica subsp. enterica serovar Kentucky strain SEN865 KENTUCKY_S18_trimmed_contig_236, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 60 29 100.0 32 ............................. CGCTTGGCGGTTATCATGGCCGGTAATGACTC 121 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 182 29 100.0 32 ............................. CGGGGATTAGCTCTAAAAATATTTTTATTTTG 243 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 304 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 365 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 426 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 487 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 548 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 609 29 100.0 32 ............................. CAGCAGGACGACGACCCGCGCCCCCGCGTCGG 670 29 93.1 32 A...........T................ GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 731 29 89.7 32 A...C.......T................ CGGACATTGTTCGTGAGCGAGCTGTTGTTCGT 792 29 93.1 32 A...........T................ ACGGGTTAGCGCCTGCGGATAATGCCCAGCAC 853 29 89.7 32 A...........T........G....... GTGGCAATGGTATCGCTATACGAAAGCGACGT 914 29 96.6 32 .......T..................... TTCGTGTATTTTGAGTCGTTTACCGTATCTGC 975 29 100.0 32 ............................. CGCGCCGCACGTTCGGTAGCGTGGCTGAGTTA 1036 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 1097 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 1158 28 96.6 0 .......................-..... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //