Array 1 2979422-2978394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGT01000001.1 Ruminococcus flavefaciens AE3010 N774DRAFT_scf7180000000009_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2979421 36 94.4 29 ...A....C........................... CTGTTCGATGTTCTGGGCTCTGGTCTTAC CTG,T [2979407,2979412] 2979352 36 100.0 30 .................................... GAAGCTGTGATTTCGCCACCATTTAAGATG 2979286 36 100.0 30 .................................... ACCTCTTGCTGTGTTTTAGCATTACGTGCA 2979220 36 100.0 29 .................................... ACTGAAGGATTTTGAATACAGTGTCAATG 2979155 36 100.0 29 .................................... CCGCCAGCCGCGATCTATAGTCAGCAGTA 2979090 36 100.0 30 .................................... ACTTGTAACGAAGTTGGAAAGGTAATACTA 2979024 36 97.2 30 ..C................................. AATATCAATGTAATTTGTGCTGAGTGTTTT 2978958 36 100.0 30 .................................... GGGCACGGATTGGCTATTTTAAGACCGTCC 2978892 36 100.0 30 .................................... TTGATAATCACCGTTGCAATGGTTGCAACG 2978826 36 100.0 30 .................................... CTTAATTATTCTTTTCAAGCAAACGACAGG 2978760 36 100.0 29 .................................... CAAAATTATAGATGTTAGCCAGTGGCAAG 2978695 36 100.0 30 .................................... ACCTCAGATGCACAAGCAGGAAAGAACCTG 2978629 36 100.0 30 .................................... GGACTTCATAATAAATCCCACACATTCAGC 2978563 36 100.0 30 .................................... TGCCCTTTTTTGACGTTCTTTTATTCAGCG 2978497 36 97.2 30 ..........T......................... ATCTTATATACGGCAAGCGCTCCAACGGAA A [2978478] 2978430 36 72.2 0 ...............CCC...TT.T..G.T..T..G | T [2978398] ========== ====== ====== ====== ==================================== ============================== ================== 16 36 97.6 30 GTTTTACTACCCTATAAAATTACACTACTCTCAAAC # Left flank : TATCTCTCATTCAAAAACACAAGCTCCACGCCTTTATTATACCACGCAAAATACTGTTCGATTCCCTCAGCTGCGTTACGGCTCATTCGTGATACACTATCAAATACGATTGTAACATTGTCGCCCTTGGCTATATCCTTATCCACTGCCTTTAAAAGCTTTTCAAACTCCGGACGGCTCAATGTAGTTCCTGTGTATTTATCCTCAAACTGAATCGAACTCTCACCTTTAAGATATGCCATGATATTATCAATCTGCCTTTGTACATTCTGCTTTTGTGTGCTTACTCTCACATAACTATACACTCTATTAGCCATAACGACATCTCCTCTATTATATATTCGTAACTTTTAAACATTCGTTTATATGTTGCAATTATATAATAGCACTACTATTCATGGAAGTCAACGGTATTTAAGGAAATTCGGAAATCTACATAATGAGCATCACTTCTCGTTGTTACATTTTGATAGTACCTCTAAATGTTACATTTACTTATA # Right flank : TTTTGCAGATGTATCGTGACTTCCGTACAAAGAAACAAGTTCACAGGTTGGATCGCGCTTTTCATTGCAGAATATAACTTTGACTTTTTTATCAGTAAGAGCAGAAATAAGGCAACCAGTAATTGATATTGCTGTGTTCTCGATTATGAGAACGGATATCTCGTCAAGGTTTATTCTATATGTATCATCTTCACTCCTTACTACGAGATATCCCATTTTCATATCGAGTTTTGCCCTTTTGGATATAACTACTGTACGCAAGCTCATAACTCAAATAGGTTCACTGACTTCTTTTCATAAAGTCCTGTAGGAGATTGGTCGATGATTCTAATTATTTTCTTTCCTTTAATCTTTGAAAGATCAGAATTCATAGTTATTACACCTGCTTGACCACTTTCATTTACAGCCTTAAGATCACAACCTGTTGATCTTCCTGTTTTCATTAACATCATTATATTATAAAGAGCGATAGTTTGTTTCGTAACATCAAGTCCGATAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACTACCCTATAAAATTACACTACTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 3200150-3200752 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGT01000001.1 Ruminococcus flavefaciens AE3010 N774DRAFT_scf7180000000009_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================== ================== 3200150 33 100.0 38 ................................. TTCATCGGAAGCCATTACTGTATCATTTATATTGGCTA 3200221 33 100.0 39 ................................. TTTTCCATTGTGATTTTCATAAACTTTTCCTTTCTACCC 3200293 33 100.0 38 ................................. TTCGCTCTTCAGTTTTGGCAAGTTTTCTTGCTCCTGAA 3200364 33 100.0 40 ................................. ACGGGTGGTAATACAACAGTTGCTATGACTCGTATAGTTG 3200437 33 100.0 39 ................................. ATCAACGACGGGATTGAAGACGCTGCTCAGGTTGTCCCT 3200509 33 100.0 38 ................................. ATTTTTATTGCTGCAAACTCGTCTAAAGACATTTCTTC 3200580 33 100.0 36 ................................. AAGTCTCCAGTCTGTAAGAGCATCCTCTGTTGTGTA 3200649 33 100.0 38 ................................. CCCTTGAGTCCTACGTTCCATTTCCAGATTTTCATAAT 3200720 33 90.9 0 ...........................T...CA | ========== ====== ====== ====== ================================= ======================================== ================== 9 33 99.0 38 GTTGCAACTCACACCCCTCACGGGGACGGAAAC # Left flank : GGATAGAGCTCACCCGAAAGGGAGGCAAAGAGCTCTGACTCTTACATTCGTGTGCAACTTCACGGCTATTAAAAAGGAGGAATTCAAATGAAAACATCAATCATGGTCCCAAATCCCCAGCTGCCTGGCCCATCATCTCTTGTAGAAAAAATCATCGAAATCATACTGCAAATTATTATAAAATAATCTTCTCAACACGATTTACATGGTCAGGAGCTCAAAAACGCAGGCAGGAGCTCCTGACCATAGCAACCGCCTGCGAAAGATAAATTGGACAAATTATTAGCAAACCACTTGACAATTTTGTGAATATATGCTATCATAAAGGTGCGAACCTATGAAAAGTGAGCTGCAAAATGGCATTAAAAAAAGGAGGTTCGCACCTCAAAAGCGGCTGTTTATGAATAAGTTGTGAACAAGACTGCGATTTTTGAGCTTGAATTTATTAATGCAACAGTAAGATAATGAACTGTTTTGCACAAAAGCAGTAATTTCTTGCA # Right flank : AAAACAAAAAGACTAAGCTTCGGCTTAGTCTTTTTTCTTTATCCCGAAAAATTTTTTCGGGATTTTTTTATTTATCACTTAATTCTGTGTTTTTCCGTTCTATTATATAACAGAAGGGCACGGAGCTCACCCGAAAGGATGCTTAAAAGCTCTCTGCCGCACACATACATCAACCTACAACCTTTAAGGAGGAAATGCCATGAGCAAGTTAGTTTCAACCACCACCGAGAAGCCTGATTCATCCAAGTCCTCATCCAACGCTGTTATATTTGTCATCAAAGTCGTAATTTACATCTTAAACCTTATACTTTCAGGCAAATCAGAAACAGAAGCAATCAGGACAGCATCAGTAAAGCACAATATCCCCGTCAGCAAAGTCAAGGACATCTGGAAAAACCACAAGTAAGATGACACACTCAGCATGGACAGGAGCTCAAATAACGCAGGCATGAGCTCCTGTCCGAAACTATCGCCTGCAAACGGAGGTAAAAACATGAAAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTCACACCCCTCACGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 3214101-3213794 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGT01000001.1 Ruminococcus flavefaciens AE3010 N774DRAFT_scf7180000000009_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 3214100 35 100.0 32 ................................... ATATTTTTGGAGGGATATGCTATGTGCCAATC 3214033 35 100.0 34 ................................... TATATTTTTATCTGAGAAACATACTCTATAGTGA 3213964 35 100.0 33 ................................... CAAAAAGATCGAACCAATGCCGTTATGGACTGA 3213896 35 97.1 33 .....................G............. CATTCCTTTTACGTAGAAAACATCGGTACGAAC 3213828 35 88.6 0 .....................G.A.........AC | ========== ====== ====== ====== =================================== ================================== ================== 5 35 97.1 33 GTTTCCGTCCCCGTGAGGGGTATGAGTTGCAACTT # Left flank : GTTGTTATTCTCGTCTGATGCCTGGATAATGGTTATTGCTGCCTCGATAAGGGTTATTGCCGCTGAGATAATGCCGATGATAACTTTTTTATTCATTTTTATATCCTCCTTTTTCATGCGGGCTTGTTGTTGTCGTCGGATGTGTTGATTATGTCTATTGCTGTCTCGATGATCTTAACTGTTGCTGAAAGGATCTTAACCAGTATGTTCTTGTTCATGTAAATTCCTCCTTAAAGGTCGCAGGTTGATATATGTGTGCGGCATGGGAGCTCTTTGACCTCCTTTCTGTGAGCTCCGTGCCTTTCTGTTATATAATAGACTGTAATTGCATTGGATTAAGTGATAAGCGAAAAAATTTTTTCGGAGCATTTTTCATGTGTTTCATGCCCTTCTGTTATATAATAGATCGGAGAAATAAAGAATTAAGTGATAAATAAAAAATTCCCAAAAAAAATTTCGGGATAAAGAAAAAAGACTAAGCCGAAGCTTAGTCTTTTTTT # Right flank : CAAGAAATTACTGCTTTTGTACAAAACAGTTCATTATCTTACTGTTGCATTAATAATTCAAGCTCAAAAATCGCATTTTTGTTCATAGCTTATTCATAAACAGCCGTTTTTGAGGTGCGAACCTCCTTTTTTTGAGGTTGTTTTGCAACTCACTTTTCATAGGTTCGCACTATTATAATATCATGTTTTTGATAAAATGTCAAGTGATTTTGTGAAATGTGTACACTTAACTTGATTTTTAGCAAAGGATATGCTAAAATCATAATATACTTAAAAAAGTGAGGGATAGATTTGCTTTGTAAAATAATACTGCCATTTGAAAGTCAGAAGGGCCTACGTTATAACTTTTATGCTTCATCACTTATGCAGGGGATAATGATGGAGACTATCCCTGCGTTTTATGCCAAAAAAATGCACAGCCTTTCGCTCCGCCCTTACAGTCAGTATTCATGCTGTCTGAACGGACAAAACGTATGGACTGTTTCAACTCTCAGCCGCGA # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCGTGAGGGGTATGAGTTGCAACTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 3218819-3218517 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGT01000001.1 Ruminococcus flavefaciens AE3010 N774DRAFT_scf7180000000009_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 3218818 33 100.0 34 ................................. TGAAAAAGAAGGTAAGAATAAAAGAAGTGCATAT 3218751 33 100.0 35 ................................. GCCATACTGCGCCATAGGGGGACGTACTGCCGTGA 3218683 33 97.0 34 .....................A........... CATAACAAATCCTCATCGTATATGAGGTAGAAGG 3218616 33 97.0 34 ....................G............ ACGGCAAGACAATTCATCTCGAAACTAAAAGAGA 3218549 33 90.9 0 ..............................GCT | ========== ====== ====== ====== ================================= =================================== ================== 5 33 97.0 34 GTTTCCGTCCCCGTGAGGGGTGTGAGTTGCAAC # Left flank : ATTCGTCATACAGGAATGAACATGAGGCGGAATTTATTCTTTATGATGCCTCGGAAAGAAATATTAAAAAGCAGTTCAGCGGAGGCAAGCTTCCACTTATAAAGGAACTCAGAGCTGAACAAAAAAGGCTCAAGGCTGAAGTTGAGAAACTAAAAAATGAGATTCGTAATGAGGCCCCACAACTTGAAGAACTTAAGAATATGAGGCGTAATATAGAAATATTCCTTAATAAAGATATTCGACAAAATCAGAAAAAGATATATGAATTGGAATAAAATAATATGGGTAATAGATGTATAACTAGTTCACATACTATTCTCATTAAAAGTCATTTGTTAGCATACGTGTTTGGCAGAAGCTCAGCTCCGCCATACTTTTTTACTCCGCCCACTGCTTTTTTATTATAGTCCAGAATAGAATCAGATTAAGTGATAAATATAAAAAACCGAAAATATTTCGGGATAAAGCAAAAAGACTAAGCCGAAGCTTAGTCTTTTTTT # Right flank : ACAGGTTCGCACCTTTATGATAGCACATTTAAATAAAAATGTCAAGCGATTTGCAAATAATTTGTTTGATACGTCTTTGCAGGCAGTTGTTGCGGTCAGGAGCTCCTGCCTGCGTTTTGAGCTCCTGACCATGCGGAATGTGTCGGATCACTTGTGCTTTTTCCAGATGTCCTTTACTGTGTCAACGGGGATATTGTACTTTGCTGATGCTTTCCTGAATGCTTCTGATTCTGTTTTGCCTAAAAGGATAAGATTAAGTATAAAGAATACGACCTCGAGTGCTATAGTTACAAGGATAAGAGAAGTTGATGTTGTTGGGTAAGGATAAGGATTAGGATATATAATTCTATTTGCCATAAGAATTCCTCCTTGAAAAAATGAGTGTGTTACCAACTTGCGTATGTTTGGCAGGAGCCCGCAAACCTCCTTCCTGACGAGCTCCTGTAAAAGTTTGTCTTGTACTTGTTTTCCTTACTTGTTGTCGTTGGATGAATTGATTA # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCGTGAGGGGTGTGAGTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //