Array 1 59725-61193 **** Predicted by CRISPRDetect 2.4 *** >NC_018092.1 Pyrococcus furiosus COM1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 59725 30 100.0 39 .............................. TGTTCATCGCACTTCTTCTTCTGACTCTGCTCCACTTAG 59794 30 100.0 37 .............................. GCGTTAATGAACAATAAGCCTGACACGAACATAAACA 59861 30 100.0 37 .............................. TTTCAATAAGGAGTTTCAAATGGCTCGATGGAATTAT 59928 30 100.0 42 .............................. AGAACCTCCGCAATCTCCTTTGGAGAAAGGCCCTTCTTGAGA 60000 30 100.0 38 .............................. CTTCTTCGAAGTCGTAGTTTAGTGTGTCAAGATATTCT 60068 30 100.0 37 .............................. TTCTAGAAGTTCTCTTGCGAGAGCCAAGAGCGCGGCT 60135 30 100.0 37 .............................. GTGTACTTAAGAATTTCTTTCATAACTTTTCTGAAGA 60202 30 100.0 38 .............................. ACATAAGAGACGGAGAGCTTGTTATCTGGAAAGCAAAT 60270 30 100.0 43 .............................. AGTTATAACAAACCAGCATGACCCGCTCTCGGCTGAGTGGCAG 60343 30 100.0 37 .............................. CTACCATGGCCATCACCAATAATTAATTGTAAGTTAG 60410 30 100.0 36 .............................. ATTTGCTGACAAGCCATCGCAAAATTCTTCTGTTTT 60476 30 100.0 37 .............................. AACTCCACGACAGCATAAGGGACATTTACCATCGTAT 60543 30 100.0 38 .............................. TTTTTGTGCTGAGCCAACCCACCACTTTGGTAAAACTA 60611 30 100.0 49 .............................. GGGGCTGCGGGCCGGCTCACACCCCGAGCTCCCGGCTCGGGGTGCTCAT 60690 30 100.0 37 .............................. TGGGATAATAAAGCCTCTATACTTCTTTGAATAATAG 60757 30 100.0 37 .............................. TCCAACATGGTTAACTTCCATCCTCTTAAAAGGAACT 60824 30 100.0 37 .............................. GTAAGGTATTCTTCATAGACACCGCTCTGCATAACGT 60891 30 100.0 37 .............................. TTGAGGCTGGAGAGGGCTTCTTTGTTACTACTTGCGT 60958 30 100.0 37 .............................. TTAACTCGTTTAGTTTTATGTTCATGTTCCACACTAA 61025 30 100.0 39 .............................. CTAATTTACGCTTTAGCTCGTGATCAACCCTAATCCCTA 61094 30 100.0 38 .............................. ACACTCATGTTTTGCTCGTATATGGGACTGACGGTGAA 61162 30 93.3 0 ...............A.............T | T,T [61181,61189] ========== ====== ====== ====== ============================== ================================================= ================== 22 30 99.7 38 GTTCCAATAAGACTACAAAAGAATTGAAAG # Left flank : TTTATGTGGAAGATATGAAGCATTAGAAACGAAGATTTTTCGGTACACGGTGGTTGGGCTTATTTTTGAATTTTTAGTCTTCTTTGAGCTTTATTTTTGAAATAAAGGTTTTTGAGCGATTAGGGTTTAATTTAGTAACTCAAAGTTAGTATTTTCAGTATGTTACAGTTTTGTTGCCAAATTATGACGAAAGTTTTTCGAAAACTATCAAATAATATTTTAAGAGGAGATTTTTGGAAAGAGTTTGATAGTTTCTGTTGGATTCTTTCAAAAGATTGCGAACTAGCTTGGTTAGAATAGTTAAGTCTTCTCCTGGGATAGGGTGTGAAAGCAGTGTTTTATTCCCAGGGTGCTCGTGGGAGTTTTCTTGATTTAAAGTCCCAGGGGGAGTTGGTTTGTTTATAAATAAGGGGTTCTTGGGTAAGGTTGATGTCCCGTAAGGCTTATAAATTCGAGTGATATAGTTACTCTGTAGGAGTATTGGGGCAAAAAAGCCCCCT # Right flank : TAATCTGCGGTGGTGGTGTGTAGGGACAAAAAGACAGAAACTCCTGAATAGGGGTGGGAAAAGGGCATGAATACCTATCTATATGTCAGGAATGACAAGTTCTTCCTCCGTTAGCAAGAATTTCCTATAAGCCTTGAGTATATCTCTATATCTTCCCTCTACATTTCTAATTTTCTAAGAATAAGGTTTGAAAAAAGCTCAAAAAGCGTAACCTTCACTTCTTCCACTCTGTATATCCACACTTCCCACAGGCCCACCTATCCCCGTGATCTGCCATGAATACTCCTGGGCCACAGCGCGGGCAGAACTTGTTCTTTCTTATAACTTTCCCATCCTTAATCTCGTAGAGCTTCCACTTCTGTCCCATTCTCACTCACCCTCCTTCTTCTCTATTAATCCATCTCTAATTAAAATGTACTCGGGCTCTATGTAGAGCATTCTCTCCTTGCTGTCGTATGCCTTCGCATATCCCTTGCTTATGTAGCTTCCGAAGTAACTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTACAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 2 74884-75058 **** Predicted by CRISPRDetect 2.4 *** >NC_018092.1 Pyrococcus furiosus COM1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =============================================================== ================== 74884 23 100.0 63 ....................... GGAAAGCATACAGCAACTCCCTAAACATCGTCGGACTTCTTGTTCTCAAATACCTTAACTTCT 74970 23 100.0 43 ....................... GAAAAGGGCATTAGAACTTGAACTGGTGAAGTTGCTTTAGAAG 75036 23 87.0 0 ....A...........G....A. | ========== ====== ====== ====== ======================= =============================================================== ================== 3 23 95.7 54 GTTTCAGTAGAACGTAATCGTGT # Left flank : TAACACGCTCTGATAAAAGTTGACTTATTTCCCCTTCTTTTTTGTTTTAACGGCTCGTTCGTCTTTGTTTTTTAGTTTTGAGGGGTTATGGGTTGTTGAAGTGTTTTTGTGTTTTTTGTGTGGTTTTTTGTTTTTTTGTTTACCCTTTTAGTGGTAATTTTTTGTCGTTTGTATGCATTTTGTGTGAGGGGTTTGTGGGGGCTTTAATCGGTTAATAAAAAGTTTTGCTTGGGGTTTGAATGGTTAGACTCTCCTATTTTGTGTTTGTTTTTGTTTTTAATTAGATTTGAGAATTTAAATTTGGTGAGAGTGTTTTCGATTGTTGGGATTTTGTCTTCTAGGGTTTTGGGGTTTATTCTGACGTGTTAACCTTTTTTCATTCCTTTTCTATTTTTGTGTTGGGTTTATAAATGGAGTGCAGTGTTACGGGTTTTCAGAGAAAGTCTTAAATAGGAGGTCAGAAATTACTCCACTAGAGAATCTAAAGAAAAAAAGCCAAA # Right flank : TTGGGATTAGAAATACGTAGAAGAGCAAGCTAGAACTTAGTCCACTCCACTTTGTAATAGACCACATCTCCATCTTCATCGACAACGGCTAGAACCATTGTTTTTCTCACACCATGAGCTACCCTTGCTCTAGCTGTAATATCGTTTGGAGAAAGCTTTTGGCTTTCTCTCACAACCCAAACGAGCCAATCAGAGTGCTCTGCCCCTTTTCTGTAAACCCTATAATGAGAACCAAATTTTAGGGCGGATTTTACTATGTAGCCTCGATCTCGAAGATCCTTATAAACCAAATACTTTACATCAAAATCCTCATCTTTCTTTTTTCCCAGGGAGACTACGTCATAAAAGGAGAGTTCTCTTTCTCCATCTAAAACCTTTATCCACCCCTTTTCCAATAAATATGCGGCCTCTATTAGGGAGAGGAACAATCTTTTTCCCTTTAGTTCCCCGTATCCCCTATTTATGTGAAGCTGGTTTATCGCCTTCTCCCTCTCACTATA # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-1.49, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTAGAACGTAATCGTGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 112273-113866 **** Predicted by CRISPRDetect 2.4 *** >NC_018092.1 Pyrococcus furiosus COM1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 112273 30 100.0 37 .............................. GAATGTTGCTCAATGCAAAGGGCTCACCGCTGCTGGT 112340 30 100.0 35 .............................. TTGAGTTGAAGCGCCACTCTTTGAAGCCTATCAGA 112405 30 100.0 37 .............................. GCTTCAGGTCTTCAATATTCAATCCCGGTCCCTTTCA 112472 30 100.0 37 .............................. TCGGGTCCCTTGGAGTTCCGAACGGGCTCCCGAGGCT 112539 30 100.0 38 .............................. TTGATTCCCTTATAGATGTTCGTTTTCCACACAACTAA 112607 30 100.0 39 .............................. CTGTATATCCTTTCGTTTGTCTTCCACACTTTCAACTCT 112676 30 100.0 38 .............................. TATGTTCGTTCTCGTTCACTGTTATTCTCTTTTGTTCA 112744 30 100.0 37 .............................. AAAAACTAAAAAAAGAAGAGGTGGTGGTGAAGAATGT 112811 30 100.0 38 .............................. CTTTTCCTGCTCCTGCTTAACAAAAGAATTGTTGGCTT 112879 30 100.0 36 .............................. GGAACCACAGACCCAATCGCAGTAATTTGGGTTGAC 112945 30 100.0 37 .............................. TCATGTATTTTTCTTCTCCCAAATCCAGGGGCTCCCA 113012 30 100.0 37 .............................. TCTCAATTGGGGAGTTGCTTTAATGGCTTTTGGAGTG 113079 30 100.0 39 .............................. AAGATAATCGCTCAACAGTTTCAATGCTATACTTGTCAA 113148 30 100.0 38 .............................. TAATCTCAATAACTTTGGCTTCTTTTCTGTGTTTGTTT 113216 30 100.0 47 .............................. GATTTCAGAGAACAACGGTGAATTTAAGAATTTCCTGACTTTCAATT 113293 30 100.0 37 .............................. ACACGAACTCCCAACATTCTTCACCACCCCTCCTTCT 113360 30 100.0 39 .............................. TTGCTGATTACGAAGGCATATCCTTCAATTGTTGCTCGT 113429 30 100.0 39 .............................. ATAGACTTCCCTTGTGTACTTTAGTAGTTCTGCAAGTAA 113498 30 100.0 43 .............................. GAAGGATAGCAGGATCTAATGTAATTCTCGCGACATCTTTAAA 113571 30 100.0 39 .............................. GATGAGGAGTGAAAGTTCTTGCAAAGCCCTTTCCAAAAG 113640 30 100.0 36 .............................. AGTATCGCTACTGTTTTCATGCACCACTGCACCCAT 113706 30 96.7 36 ..............G............... AATCAATCCGAGAATCGAATTTTCCTATACGCTTTT 113772 30 100.0 35 .............................. TTTGTTTTTGCTCCTGTGTCTTGTGGTGATAAAAT 113837 30 96.7 0 ...A.......................... | ========== ====== ====== ====== ============================== =============================================== ================== 24 30 99.7 38 GTTCCAATAAGACTACAAAAGAATTGAAAG # Left flank : TATTTTATCCGCAAGTTATAAAAGTTTGCGCAAAAATTTTCGGTACACGGTTTTTGGGTTTCTTTTTGGATTTTTAGGTTTCTAAGGGCGTAATTTTTGAATTGGGGGTTTTTGGGGAGTTAGGGTTTAATTTAGTAACTTAAAGTTATTATTTGCTTTGTGTTACAATCTTATTGTTAAATTGTAACGAAAGTTTTTCGATGAGTTTTTAAAAAGATTTTGAAGTGTTGTTTTTTGAATTGGCTTGAGGTTTTTTGTTGGATTCTTGTAAAAAGGCAGGAATTAGCTCAATTCAATCATTGAAGCTTGTTCGTTGAATAGGGTTTGGTAAGGGGTATTTATAATCAGCTAGTTTTTTGGTTTGTTTTTGGTTTAAAGGGTTATAATGGTTTGTTTTGTTTATAAATGGGGGGTTGTGGGGGAAGGTGGATGTCCCGTAAGGCTTATAAATTCGAGTGATGTAATTACCCCAATGGGGAATTGGGGCAAAAAAGCCCCCT # Right flank : GCAAAAGAATTGAAAGAAAGTAGCATCGGTAAAAGAGACATTGTAATTATATATATGCTCCTAATACCGCTCCTTCTACTTTTTTGGAACTTTTGCAAGTATTAAGAACATTAGATAATAGAGGAGAGGTAGACTCTATAGAAGAATGTCATCTTCACACTATTCCTGCTCTCCACTCTTCTTCTAGGTTTGTTTGTAGGAAATATAAATTTGTGATCACTGCTGACCACAACTCTAAAAACTATTGAAACCCTAGATTTTACCATGCCTAATGATCTTAAGAAAGAGCTCAGAGAACTTAAGGAAACTCTTGAATACCTGAAGAAGAGTTTTGAGGTAATTTCACAGTTGGCTCAAGCTTACATAAGGCTTCTAAACGTTTACGCCGAATATGGGGATTTGGGAATAGATGTTGTTATTCCTGAGATAAAGCATGACCCTATTGCTAGAGATATAGTGAAGATACTTTTTGACCTTAGGCGCGCTAACGTTAGTCAAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTACAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 4 428262-426205 **** Predicted by CRISPRDetect 2.4 *** >NC_018092.1 Pyrococcus furiosus COM1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 428261 30 100.0 37 .............................. AGCCAGGACTTCGTTTCTGGACATGCTGAGATCAAGG 428194 30 100.0 39 .............................. GACCATACTCACCAGCAGCGGTGAGCCCTTTGCATTGAG 428125 30 100.0 37 .............................. AAGGGGAATGGTTCACGTAGTACTTGAGGGCGCTCAC 428058 30 100.0 36 .............................. AAAAGATCAAAACAATAACACAGTCCTAATGCTCGT 427992 30 100.0 37 .............................. ACCACTCCTGAAAACGCTAGCAGGACTAGTGCTTGTG 427925 30 100.0 37 .............................. GGAACTCCTCGATTTTAGTACCTGTGTCAGAGTCATA 427858 30 100.0 38 .............................. AGGCACTTGGCTTGGAGGGATGACGTCCACTATTTTCA 427790 30 100.0 37 .............................. TCTCAGCATACTCCTCATCCGTCAGCATATCATAGCG 427723 30 100.0 37 .............................. TAAGCATCATAATGCAAGACATCTGTATATATAATAG 427656 30 100.0 38 .............................. TCTCTACCCTTACAAGCTTCTCGAATCTATCGAATTCG 427588 30 100.0 38 .............................. CCTTCTCAGAGGGTGATTTATCTACATACCTATTATAT 427520 30 100.0 37 .............................. CCACATAAGACATTGTCATACAAAGTAGGACAAAATA 427453 30 100.0 38 .............................. GTCACGTAATTCGCCAAGTCCTCTTGGAGACCGTTCCT 427385 30 100.0 36 .............................. GTGGATAATATAATCCCTGTTTTTCCCAAGAATTAA 427319 30 100.0 40 .............................. AGATTTGGGTCTAAGGGATATACAAAAGATGCAAAGAAAG 427249 30 100.0 38 .............................. AGTGCCCTATCAAGAAACATTGCCACATGCCATGAATA 427181 30 100.0 38 .............................. GTGTATACGGTATGCAACACATCAATAACTAGCTTGGC 427113 30 100.0 38 .............................. TTCACTAGCTTTTCACACACTCTCATGGACATTAGCTA 427045 30 100.0 36 .............................. TAATCTCAATAACTTTGGCTTCTTTTCTGTGTTTGT 426979 30 100.0 38 .............................. CTGATAGTAAACTACGCTGATTTTGTAATACAAAAGTC 426911 30 100.0 37 .............................. CCTTATACTTCCCTGCCTCAACGAATACATTAACAAC 426844 30 100.0 42 .............................. TATCTTGAATCTCTCATTTACTTCAGCAATCGGTAACTCCGA 426772 30 100.0 38 .............................. GCAATGAAAAATTTTTGCAATGTCGAAATCAATGCCCA 426704 30 100.0 37 .............................. TGGAACTCTATCAAGGTTTGCAACACCTTGCTCCCGC 426637 30 100.0 35 .............................. ACCTAGCCTTCACATCCCTCGACACCTTCTCAGCT 426572 30 100.0 35 .............................. AACGAACCACTCAATAGTGTCGCCATAATCACCAT 426507 30 100.0 39 .............................. TGAGTCCCCTATAAACCTGTGGTCTTGGTCTCCTTACAA 426438 30 100.0 38 .............................. GCCGACAACATCAGCAACGGTGAGCTTATTGTAAGGAG 426370 30 100.0 38 .............................. AGTATTCCACCGAGAATTGTGCCTTTGTACTGGACTGC 426302 30 100.0 38 .............................. AGTCCTAAGTCTCCAGCAAACCACCCGTCTAACCACCT 426234 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 31 30 100.0 38 GTTACAATAAGACCAAAATAGAATTGAAAG # Left flank : ATTATCTTGGTTGAATTTTATATCTTTTCTGAAGATTTTTCGGTACAGGGTGGTTGGGCTTATTTTTCCATTTTTAGTTTTCTCTAGGCTTTATTTTTGAAATGGAGATTTTTTAGGGATTAGGGTTTGATTTAGTAACTCAAAGTTAGTATTTACAGTATGTTACAGTTTTATTACTTATTTGTTACGAAAGTTTTTCGAAAATTTTTGAATACCATGATAAAGACAAATTTTTAGAAAAAGTTTGATAGTTTCTGTTGGATTCTTTCAAAAGATTGCGAACTAGCTTGGTTAGAATAGTTAAGTCTTCTCCTTGGATAGGGTGTGAAAGCAGTGTTTTATTCCCAGGATGCTCGTGGGAGTGTTTTTGATTTAAAGTCCCAGGGGGAGTTGGTTTGTTTATAAATGGGGGGTTGCTGGGTAAGTTGGATGCCCCGTAAGGGTTATAAATTCAAGTGATATAATTACTCCATAGGAGTATTGGGGCGAAAAAGCCCCCT # Right flank : AAAGCTTTCAATAAGCCCTACACTAAAATTACTTAAGCACTTAAGCAGGTATTTAGCTCTAAAAACCCCTCAAAAGCTTTAAAAAAAGTTTATAGAAAATAAATAATAAAGCAACACTAATTATTCGGCCCTATATATCTCCTCAGAGAATGTAACGAATTCTGTCCAGGATAGATGTGCCAAGAACTTAGCCTTTGGATTTGGCTTTCCGTTCTTGAATGCCTCTTCATTGTAGGAGTATCCAACCACTTCTCCCACAAACCAGATGTGATCCCCGTAATCTCTTTCATCTATAACCTTACATTCTATGTTGGCCAATGCCTCCTTTATGCTTGGAACGCTCACGTTCTTTGAGGGAATCAGGGTTATGTTCATCTCCTTTAGCTTTGCAGGTCCCTTCTTTGTCCCAGCAATCCAGACATCTCTAAGCATGTCAAGGCTTGGAACGCTGATTACAAACTCCTTATACTTCTTTATTAGTCCATGAGTTGTTCTTTGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATAAGACCAAAATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 5 499027-502016 **** Predicted by CRISPRDetect 2.4 *** >NC_018092.1 Pyrococcus furiosus COM1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 499027 30 100.0 37 .............................. AGTGAAGAATTTGACGTACAAATGTCCTTAGTGGAAC 499094 30 100.0 37 .............................. TGATGTAGATCTCTGTACCTTTCGGGACCTGTAGGTC 499161 30 100.0 39 .............................. CAGTTCTACTTTGATAAGACTGTGGTGGTTAATGGTAAA 499230 30 100.0 37 .............................. CTCTTATGGTGAAGCTTTCGACATTTTCTTTGGATGT 499297 30 100.0 37 .............................. CGTCTTCTCTGAGATTCTTGGCTCGTTCTAGAGCCAT 499364 30 100.0 37 .............................. GAGAGTATCAGGAGCTTTCTGACCTCCTTATACAGCT 499431 30 100.0 38 .............................. GACAAAGAACTCCCTAGCGTCCCTCCCCGTGTACTTGA 499499 30 100.0 37 .............................. CCACACTTCTATCTCAGCACCCCCAAACGTGAAACTG 499566 30 100.0 36 .............................. TTCTGCCGTCCCTTTTCTCGACGAACCTCATACCGA 499632 30 100.0 39 .............................. TTGAGGAGATGCTTACTGCGGTTAAAAAGGACATTGCAG 499701 30 100.0 37 .............................. GGTGCTTGAGCTCGCTAGTGCCCTCCTCCTGGGCTAT 499768 30 100.0 38 .............................. TAATGCTGTACAGGATTGACAAGGAGGCTTACGCTTCT 499836 30 100.0 37 .............................. TACTATAGGCGGAACTCCCTGCAATGAAAAATTTTTG 499903 30 100.0 37 .............................. GCACCTTCTTCACCATCGCCGTCTGGATTGCTGGTAG 499970 30 100.0 37 .............................. TGTTTTCGAATATTGTTACTTCTTGTGTATCTCTGAA 500037 30 100.0 37 .............................. ATTCACTGGGTTCTTCAGAAAGTTCATAAATTCACCG 500104 30 100.0 34 .............................. CCTTCTTCTTTTTAAATTTTTTAATTTTCATTAA 500168 30 100.0 41 .............................. TGATCTAGGCGTCGGGTAATTCTGTAAGGTCTCTGGCTCAT 500239 30 100.0 43 .............................. ATGACTATCAGGATGATAATCGTTTTTTTATGCTCGCTTACAA 500312 30 100.0 37 .............................. ACAGGCAATTAGAAACTCTTTCAAAAACGCAGTTCAG 500379 30 100.0 37 .............................. TAGTGTAACAACATCATATGGAAAGTCTCCCACGTTG 500446 30 100.0 38 .............................. GGGTTTACTCCGAACGGTGTTCTGCTAACTGATATAGT 500514 30 100.0 36 .............................. ACTTAGCCACCTCCGAGATGTTTTCGTAATAGTTAT 500580 30 100.0 37 .............................. TTGTAGGCTCGTGGACTTGGCTTCCACACAACTAATT 500647 30 100.0 37 .............................. CTTCTTCTCTTACAAAGTCTTCAATGATAGTAAATAT 500714 30 100.0 38 .............................. TGGGGTCTCGTCGCAATCGGTGCAGTATTCCTAAGCCT 500782 30 100.0 36 .............................. GCAATTGGGCTTTTTGTAGCTGGAATCTTGGGTGAT 500848 30 100.0 36 .............................. AAAGATTCTGATTCCCGAAAGGCTTTTTCCGACACC 500914 30 100.0 37 .............................. TCACCATTACCTCCTAATCCAATCATCTAACATTGAA 500981 30 100.0 38 .............................. TAACTCTAATGTTTCATCGACTAACATGTCAATTTCAT 501049 30 100.0 38 .............................. TTGGATTTGCTACTCTCACGTATAGGGTCCCTACCTCT 501117 30 100.0 35 .............................. TGATATAGTCGTCTGCTCCTGATACCCAATATATG 501182 30 100.0 37 .............................. AGGAGGCTCTAGATGAGCTAATCAGCGCAGAAGGTGG 501249 30 100.0 35 .............................. ACCACCCCTGGGAAAGGCCTTATGGTACTACCTAA 501314 30 100.0 35 .............................. CTTAAAAATACTACCCTCAACAATCAATATTGCAA 501379 30 100.0 37 .............................. CTCTCTTACTTCTATAAGACTGAAACTTCACACCTAA 501446 30 100.0 38 .............................. TAACGCTTATTTCACCCTGCTTAACACTCTTAACCCCA 501514 30 100.0 37 .............................. ACATCCCTACATAATAATACGCCACTTGTCCAAAAAC 501581 30 100.0 36 .............................. ATCTCCATCATACCAATGCTGTGCAAAATCAATCTT 501647 30 100.0 40 .............................. TTGAAAAGGTTGGGTGATAGGGTTAAGGAGGAGTTAGTGA 501717 30 100.0 39 .............................. TAAACTTAAGCTGGGATGGGCTATATACAAAGACAGACA 501786 30 100.0 38 .............................. GAGATAGAGCTGGTTTTACGTTATGGCAAAATCTTAGA 501854 30 100.0 36 .............................. TGGTTCATACAATTCTGGAAGGTTGTAGAAACCAAC 501920 30 96.7 37 ...C.......................... GATGCCCAAACCTGAATATACCCCGCACTAACTAAGT 501987 30 90.0 0 ...C...........C..A........... | ========== ====== ====== ====== ============================== =========================================== ================== 45 30 99.7 37 GTTACAATAAGACTAAAATAGAATTGAAAG # Left flank : TTGCAAGATGGTATGGAGCACCTTATGAGTGAAGATTTTTCGGCACACGGTATTTGGGCTTATTTTTGAATTTTTAGTCTTCTTTGAGCTTTATTTTTGAAATAAAGGTTTTTGGGCGATTAGGGTTTAATTTAGTAACTCAAAGTTAGTATTTTCCTTGTGTTATAGTTTTACTATTTACTTGTGACGAAAGTTTTTCGAAAATTTTTGAATACCATGATAAAGACAAATTTTTGGAAAAAGTTTGAGGGATCCTGTTGGATTCTTGTGAAGAGTTAAGAATTCGCCCAGTTAGTCTAGTTAAGTCTTCTCCTGGGATAGGGTGTGAAAGTAGTGTTTTATTCCCAGGGTGCTTGTGGGAGTATTCTTGGTTTAAAGTCTTAAGGGGAGTTGGTTTGTTTATAAATAAGGGGTTCTGGGGTAAGTTGGATGCCCCGTAAGGGTTATAAATTCAAGTGATATAATTACTCCATAGGAGTATTGGGGCGAAAAAGCCCCCT # Right flank : GTTCTTGGTCCAGATGGTATTGCAGATAAGGACGGAGATGGAATTATTGCAGGTGATCCGGACGATGACGCTGCAGAAGTCATAAGTATGTCCCTAGGAGGATCTGCAGATGATACTTACCTTCACGAGATCATTAAGAAGGCCTACGAAGCGGGAATAGTTATAGTTGCAGCGGCTGGCAATGAAGGAGCCTCTAGCCCAAGTTATCCAGCAGCCTATCCTGAAGTAATTGCAGTAGGGGCTACTGATATAAATGACCAAGTCCCGTACTGGAGCAATCGTCAGCCAGAAGTTAGCGCTCCAGGTGTTGATATACTTAGCACTTATCCAGACGACACTTATGAAACTCTTTCAGGTACAAGTATGGCAACTCCTCACGTAAGTGGTGTTGTTGCGCTAATTCAAGCTGCATACTATCTCAAGTACGGCAAAGTACTTCCAGTTGGAACATTTGACGATATGAGTACCAATACAGTTAGAGGAATTCTGCACTTGGCAGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATAAGACTAAAATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 6 868060-865558 **** Predicted by CRISPRDetect 2.4 *** >NC_018092.1 Pyrococcus furiosus COM1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================================== ================== 868059 30 100.0 37 .............................. TTGTAGTATGCGGTCCTTGCGGCTGAGAGCACTTCAG 867992 30 100.0 37 .............................. TCGTTATCTCTTACGAAGTCTTCGATTAGTGAAAACA 867925 30 100.0 37 .............................. AGGAGGTGGGACAATGACAGACATTGAAAAAATATTG 867858 30 100.0 37 .............................. TATCTATTGTACAGGTACTTGTTACACGTGAGTGCAA 867791 30 100.0 38 .............................. AACTATCTTAATTCCCGATATTGTTCTTCCCACGCCTT 867723 30 100.0 37 .............................. TTAAACTTTTCGTTCCTTGTTATTATCCTACGAACTC 867656 30 100.0 40 .............................. TGACTGCCTCCCTCAGAACCTTAATGATATCCACTGGCAA 867586 30 100.0 37 .............................. TTTTCCGTTTTTGACAAAATTTCTGTTCTCTGCCACT 867519 30 100.0 49 .............................. AACTTCGATCGCTGAAGCTCTGACATTTAATCTTATAGATATTCCTACA 867440 30 100.0 49 .............................. CTGGAACTTGGCAAACGTAAAGGTGTGTTTCCACTGGAGCAAGTGGAGA 867361 30 100.0 39 .............................. GAGCTCTACCCATACGCAATAGAGTGGCTTAAGTTCAAG 867292 30 100.0 37 .............................. TTTCATTTCTTCCATCTCCCACCTCCTTGTTACTTCT 867225 30 100.0 39 .............................. GACTCAAAAACCTCAAAAACAAATCGGAGGTTGGGGGAA 867156 30 100.0 37 .............................. CTAATCTTCTGTATCTTCTACCCTCCATCTTACCCAA 867089 30 100.0 36 .............................. ATCGCAGTAATTTGGGTTGACAGGGGAGCTATAGAA 867023 30 100.0 34 .............................. TAAGTTCTTTTACAGAAGCCTTAACCTTTTGATA 866959 30 100.0 37 .............................. CAACAATGATTGCATACACATATTACAAACATTTACA 866892 30 100.0 37 .............................. GGAGTTGGGATTCTATGAGGATTTAGCCAATCACTTA 866825 30 100.0 38 .............................. GAGTTTCCAATGATGATCACCCCGAGCTCTCGCTCGGG 866757 30 100.0 34 .............................. TAAGTTCTTTTACAGAAGCCTTAACCTTTTGATA 866693 30 100.0 39 .............................. TTGGCCAAAAAGTGAAAGGCGCATTGGAGTGGGTGGCCA 866624 30 100.0 37 .............................. TTAACCTCCTTGGCTGGTTTAGAGGGAGCCTTCCTCG 866557 30 100.0 37 .............................. TTTGCTGGCTTCATCTGTCTGGAGGAACTTAATTGGC 866490 30 100.0 40 .............................. AGGGTACAGAAGTTTACGTGAAGGCAGAGAATGCTGGAAG 866420 30 100.0 37 .............................. GAAGAAGGGCTACAAAGTTCTAAGGGACTACGGGGAC 866353 30 100.0 38 .............................. TCAAGAGTTCTATCCTGCTTCACAACACCCATATAAGG 866285 30 100.0 37 .............................. ACGATGGGAAGTACTACTACGAGGGGAGGGTTGTAGC 866218 30 100.0 45 .............................. GGACTTTAGATATGTTGTTGTTATTGTATAAGTCTCTAAAGTCAG 866143 30 100.0 37 .............................. TTATCTAAGCTCTGCTTAAATGGGAAAATCTTATAAG 866076 30 100.0 59 .............................. CTTTTTGCGGGCGATGACGGGGGGTGGGCTCTACTATGCCGTTGGCAAACAACTTCCTG 865987 30 100.0 38 .............................. ACATAAGACGTGTGGCCGTCGAAGTACCTTATTCTCCT 865919 30 100.0 37 .............................. GCTGTCATCTACCCGGATCTCAGCGAGGTAGGCCGTG 865852 30 100.0 35 .............................. TTCCTTATCATTTCTACTGCAACTCTATCTCCAAA 865787 30 100.0 37 .............................. TGTGAAACGCTAATAGCTGTTATTCTAACCTCTCTTC 865720 30 100.0 37 .............................. TAGAATTATAGATGAAGAAGTAGTAGTGAAGTCAACT 865653 30 100.0 36 .............................. GAGTTGTGTCAAGAGGATGATTAGGTAGAGCCTCCG 865587 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================================== ================== 37 30 100.0 39 GTTCCAATAAGACTACAAAAGAATTGAAAG # Left flank : AGACAACTACAATGTACATGTGAAACACCCAAAAATTTTTCGATACACGCTAATTTAACTTTTTTCCCAAAAATATCTATGAAAAAGTTAGAAAATTGAAAATAAAGGTTTTTGAGGGATTAGGGTTTGATTTAGTAACTCAAAGTTAGTATTTTCCTTGTGTTATAGTTTTACTATTTACTTGTTACGAAAGTTTTTCGAAAACTATCGAATAATATTTTAAGAGGAGATTTTTGGAAAGAGTTTGAGGGATTCTGTTGAATTCTTGTGAAGAGCTAAGAATTCGCCCAGTTAATCTAGTTAAGTCTTCTCCTGGGATAGGGTGTGAAAGCAGTGTTTTATTCCCAGGGTGCTCGTGGGAGTTTTCTTGATTTAAAGTCCCAGGGGGAGTTGGTTTGTTTATAAATGGGGGGTTCTGGGGTAAGGTTGATGCCCCGTAAGGCTTATAAATTCGAGTGATGTAGTTACTCCGTAGGAGGATTGGGGCAAAAAAGCCCCCT # Right flank : TTTGGACTTCATTCACAAAACGTCTCGATTATTCTCTGAATTATCTTACTTGTCTTTGCCCTATCGGACTTATACAAGTAGGGCAACCTGATAACCTCCGCATTTATTCCCTCTTTTCTGAGCCTCTTCTTTAACTCCTCGCAACTAAAATCTTGATCTGGTCCCAAGGCTATTACGTCCGGCTTCAGCCTTTTTATCAAATCTATACTTATTTCACCCGGTTCTCCAATCACAACATCATCCACATACCTAATACTCTTGAGCAGTTCTGCCCTGTCTTCAGCTGGATTAATAGGAGGTCTTCCTTTTCTCCTCTTCACGGTTTCATCATGGGCAACAATAACTATTAACTCATCACCCAACTCCTTAGCCATCTTCAAAAAGTGGACATGGCCGACGTGGAGGATGTCGAAAACACCTCCCACCACAACCCTTACCTTGCGGTTATCTCCCATATCTTATCCCTCGCGTGGTGGATGACTTTCACTGCCTTTCCCCTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTACAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 7 894372-893602 **** Predicted by CRISPRDetect 2.4 *** >NC_018092.1 Pyrococcus furiosus COM1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 894371 30 100.0 37 .............................. TGCCGAAGCAAATAGCTGCTCCACACACAGTCTTTGA 894304 30 100.0 37 .............................. GGAAGAAATGCAGACGACGTGATAAACTACGTGAAAA 894237 30 100.0 38 .............................. CGGTGGAACTCGTGCACTAAGGCACCATACGCCCAAAC 894169 30 100.0 37 .............................. TGAGCTTCAACCTTCCATTGAACTCTATGAGCTTCCG 894102 30 100.0 38 .............................. GGACCTCTTTCATAATCCTCAGGGCGTCCTCGTAGCCC 894034 30 96.7 36 .............................C TTGCCCAACCTCTCTAGAAACGCCCACCTTTGTTAC 893968 30 96.7 37 .............................C GCAAATCTCTTTTTAAATCTTTGAGAACGTCTTCGGG 893901 30 93.3 37 ...A.........................T AAAGATACAAGAAACGCCTTCTCCGTCTCAACCTTAA 893834 30 93.3 36 ...A.........................C GAGAATACTGCACCCACTCGTCGTGAACTCTACTGG 893768 30 93.3 40 ...A.........................G GGGACTATGCTGGGAGAATCTGCAGGGTTTTTAACCGTAG 893698 30 90.0 37 ...T........................AG AACATAGGGAAGGGATTTTATTACATTGAGCTTTCAA 893631 30 90.0 0 .......C.......A...........G.. | ========== ====== ====== ====== ============================== ======================================== ================== 12 30 96.1 37 GTTCCAATAAGACTACAAAAGAATTGAAGA # Left flank : TGAAAAGGCTAGGTTAGAGTGAAGTTTTTGAAATTTTTTCGGTACACGTTGATCGGGTTTCTTTTTTGGTTTTTTAGTTTTCTAAGGGCGTAATTTTTGAATTGGAGGTTTTGGAGAAGCTAGGGTTTAATTTAGTCACTTGAAGTTATTATTTGCTTTGTGTTACACTTTCATTGTTAAATTGTAACGAAATTTTTTCGATGAGTTTTTATTAAAGTGTTAGAGGATTGTTTTTTGAATTTGCTTGAGGTTTTTTGTTGGATTCTTGTAAAAAGGCAGGAATTAGCTCAATTCAATCATTGAAGCTTGTTCGTTGAATAGGGTTTGGTAAGGGGTATTTGTAATCGGCTAGTTTTTTGGTTTGTTTTTGGTTTAAAGGGTTGTAATGGTTTGTTTTGTTTATAAATGGGGGGTTGTGGGGGAAGGTGGATGTCCCGTAAGGCTTATAAATTCGAGTGATATAATTACCCCAATGGGGAATTAGGGCAAAAAAGCCCACT # Right flank : CTTATTTCATTAAACCTTGGCCCTTAAATGTTTTACTTTGAAACTTCAATTTTTTGGAAAGTTTCTTGTAAGAACGTGTAGATAAGGTTTATAATTTCCCCTACCTTTGGGTTAGCTTGAGAGGTGAGGCATATGAAGAAAATAAGACAACCCATCATTGCAGTTCTAGGTCACGTTGACCACGGAAAATGTCTTCTTCCAGAAGAAAAAGTTGTTTTACCAGAGATTGGACTTGTTACACTGAGAGAACTCTTCGAGCTGGCAAATGAAGTTGTGGTGAAGGATGAGGAGAAGGAAGTTAGAAAGCTGGGGAAGATGTTAACAGGTGTAGATGAAAGAGGAAATGTCAAGCTTCTCAATGCCCTCTACGTGTGGAGAGTTGCACACAAAGGTGAGATGATTAGGGTTAAGGTCAATGGATGGTATTCAGTTACCGTAACTCCTGAGCATCCATTCTTAACTAATAGGGGGTGGGTAAAAGCTGGTGAGCTCAAGGAAGG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTACAAAAGAATTGAAGA # Alternate repeat : GTTACAATAAGACTACAAAAGAATTGAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 8 1468914-1465385 **** Predicted by CRISPRDetect 2.4 *** >NC_018092.1 Pyrococcus furiosus COM1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 1468913 30 100.0 48 .............................. TTATATGATTCATTTCTTGTCTTAAGCAATCTGATCTGACCAGAGCTG 1468835 30 100.0 36 .............................. TAAAGTTTATAAACTTTTCGTGTATAGAAAAGTGCA 1468769 30 100.0 38 .............................. CCGGTTCTGCACCCGAAACTTTCATACCAAAATACTCC 1468701 30 100.0 36 .............................. GGTCATACTTTACTGCTACAACCCGCTCTGGGTCGA 1468635 30 100.0 40 .............................. CTCTTATGCTGAATTTTTCTGAATCTTCGGATACTGGCAA 1468565 30 100.0 37 .............................. GCGTTAATGAACAATAAGCCTGACACGAACATAAACA 1468498 30 100.0 38 .............................. GGAAATGTGCGTAAAGGTTTTCTTCCCAGGCTTTCGCT 1468430 30 100.0 36 .............................. GTAGTGAGGCGTTGAACTTGACCCACCACCAGCCCT 1468364 30 100.0 39 .............................. CACTACTGTCCTCTCGACAATTGACGTTATTACAGTCGA 1468295 30 100.0 38 .............................. TCAAAACTTTACAAAAGTAAAGAAAAAATTGAACGGGT 1468227 30 100.0 37 .............................. GCGTGCCGTGTGTTTTTATAACTGCTCTAATGTGTCT 1468160 30 100.0 37 .............................. TTGCTGCATATCCAGTGTGGTTGGTCTTGAGGTATAT 1468093 30 100.0 37 .............................. AGACATTAGGAGACAGTATAGGCCAGAACTTGCCCAG 1468026 30 100.0 36 .............................. TTAGCAAATTGCCGATTACTGCACATAAAAAAAATA 1467960 30 100.0 37 .............................. TTTTTTTGCCCGTTTTTTCTTTTCCCTCACCGCTTTT 1467893 30 100.0 38 .............................. AGAATCTATAAGGGATTGAAAGGTCAAGGGTATACTAT 1467825 30 100.0 37 .............................. ACGAACCTCTTTGATCGTAAAAATTTCAATCATCTCT 1467758 30 100.0 39 .............................. CTCCTATGCGGTCATTAGACCCCCGCCGGGGGCCGGCAG 1467689 30 100.0 38 .............................. TGAGTTGTTTAGTCTAACTCTTACACCATCAGAAATAA 1467621 30 100.0 38 .............................. ACAAATTAGTCAGAACCCCCCGCAATGAAAAATTTTTG 1467553 30 100.0 35 .............................. GACAGCGTGGACACGGTGAACGGGCTCTGGAAGGA 1467488 30 100.0 37 .............................. TGCGCTATTCTCGGGTCAAGCCTCCCAGCCTGAACCT 1467421 30 100.0 36 .............................. AGCGGTCTGAGCCTGAGCCGTCGCTCCCTCAAGCGA 1467355 30 100.0 38 .............................. TTATTCCTGATAGAACCTTTGCCACTGTTGAATTCCAG 1467287 30 100.0 37 .............................. CTGTATTTCTTGCGGTAATACCCCCCAAATAGTTCCT 1467220 30 100.0 36 .............................. CATACTTGCGGATACGGATCCAGTCAAAACTTGACT 1467154 30 100.0 37 .............................. AACACTTTCCTTAACTCTGGGTCGTCTATGTTTTTGA 1467087 30 100.0 38 .............................. CTGGAGCGTTGGGCACAAGCATGGGGATGATTGTGGAG 1467019 30 100.0 37 .............................. AGGGTTGGGTTCTCAATGGTGTATGGAGCGTTTCTTA 1466952 30 100.0 38 .............................. CTATTAAACGCAATCCGCTCAGCCAAACATCACCCCTC 1466884 30 100.0 37 .............................. TGATGGAGTAGATGAAATTCCTGGGGTGTCTTGGGAA 1466817 30 100.0 37 .............................. GGTCTCATCTCCTGCAGCCTTTCTTCCCTCAACCCAC 1466750 30 100.0 38 .............................. GGAGCTAGAATTGATGAAGGAGGTTGCTCAAGTAGTGC 1466682 30 100.0 37 .............................. CACAAAGTTCTTCCATTCTACTAGTCCAGCTCTCTGT 1466615 30 100.0 37 .............................. CTGTCTCCCTAAGAGCATACAATCCTCTGTACTCTAT 1466548 30 100.0 38 .............................. GGAGTAGAAATGCCCAAATTCCCCTTAGGGACAAGATG 1466480 30 100.0 40 .............................. CACCACCACGATGAAGGTACCGTTCTCAACGTCTACTTCA 1466410 30 100.0 37 .............................. AATCAACCCCAAACCTTGCAAGGGTTGCCTCAACTGG 1466343 30 100.0 38 .............................. AACTTCCTCTCCAACTCCCTCACCTCCTCATCCGACAA 1466275 30 100.0 49 .............................. ACTGGATTGAGAGCAACTTGTCGAATTATGTCGTCAAGCTCGTCATTGA 1466196 30 100.0 42 .............................. GATAATGCTAGGTTATTATATAGGTATAAGGCAAGGTGTCCA 1466124 30 100.0 42 .............................. GTTTCCAAGCCATTCCAACCACCCCACATGTGTTGTTTTCAT 1466052 30 100.0 40 .............................. TTTGTGATAGTGTTCTTTGCAACGAAGAGCTTGCTGGTCA 1465982 30 100.0 37 .............................. GAACATTGTCCCCTCCTCCAAACAGTTTTTCATGTCT 1465915 30 100.0 37 .............................. TAGAGTGCGGCGATTATTTTGGTTCTCAGCGTTGCTC 1465848 30 100.0 37 .............................. TCAGCAGTTACGTCGTTCTTCCAGGTGAGAATACCAT 1465781 30 100.0 49 .............................. AATAATCAGCAAAATCACGGGACATAGAAGGCTAGACTACATCCTACAC 1465702 30 100.0 39 .............................. AGAGAATCTGGTAAGGAGACAGTAAACTGATCATGCAAT 1465633 30 100.0 43 .............................. GAGTTTCCAAGATGAGTGCCCCGAGCCGGGGGCTCGGGGCATG 1465560 30 100.0 46 .............................. AGAGGCCCCCACATCTGATTTAATCTGAGATGGAACTTCCACAATT A [1465549] 1465483 30 100.0 38 .............................. ACGGTTGGCCTTGATACACTGGCCAAAAGAAATCTACG 1465415 30 90.0 0 .............C......A........A | A [1465396] ========== ====== ====== ====== ============================== ================================================= ================== 52 30 99.8 39 GTTCCAATAAGACTAAAATAGAATTGAAAG # Left flank : TTCCAGGGAATATTTAAGGATAGTTATATTGAAGATTTTTCGGTACACGATGTTTGGGCTTATTTTTTGATTCTTGGTTTTCTTTGAGCTTTATTCTTGAAATAAAGGTTTTTAAGGGGTTAGGATTTAATTTAGTAACTTGAAGTTATTATTTGCAGCATGTTACAGTTTTGCTACTTATTTGTTACGAAAGTTTTTCGAAATTTTTTGAATAGCATGCTAAATATAGATTTTTGTAAGAAGTTTGAGAGATTCTGTTGGATTATTATAATTAGGTAGGAGTTTGCTTGGTTGAGTTAGTTAGGTATTCCTCTGGGATAGGGTGTGAAAAGGGTTGATTTTTCCCAGGGTTACCCTGGGAGTATTTTTGATTTAGGGTCTCAGGGGGCGTTGGTTTGTTTATAAATGGGGGGTTGCTGGGTAAGTTGGATGCCCCGTAAAGGTTATAAATTCGAGTGATATAGTTACTCCGTAGGAGTATTGGGGCGAAAAAGCCCCCT # Right flank : AGCACATTTATTTTTCAAAGGTGGAAGAGACACATGCTCGGATATTTGAATGTGAGGTCTGATAAGATATGTGTTCGATGTTTTTAACACGAGTTTTTAAATTAATGAAAATACGAGATATTTTTCTATTCTTTGTTTAAAATTGTTTCTAATAAAAATTTTTAAACTAGAAATTAGAAAAATTCTAAAGATCTAAAGAATCACGGCAATCATCATGGAATTAACGTTCGTTCTCGTGGGCCCAGTTATAACAAGAGCCTTCGCCCTCTTCAGCGCCTCATAGGCGTTGTGTCTCTTTAAGTATTCCTCAACGTCAATGTTCTCTTTTTTAAGAACCTCCAATGTGTAGCTATCTACCAATCCTCCAGCAGCATCTGTGGGCCCGTCAGTTCCGTCGGTATCTATGACCAGCACGGCAACTCCTCTAAGCCCTGCTATCTTCCTCGCTATACTTAGGGCAAGCTCCTGGTTAGGCCCACCAAGCCCAGCTTCCCCCTGTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], //