Array 1 89509-90269 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGDI01000063.1 Escherichia coli strain NS-NP043 sequence063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89509 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 89570 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 89631 29 100.0 32 ............................. CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA 89692 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 89753 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 89814 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 89875 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 89936 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 89997 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 90058 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 90119 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 90180 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 90241 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115972-117464 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGDI01000063.1 Escherichia coli strain NS-NP043 sequence063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 115972 29 100.0 32 ............................. TCGTTAAAACCGGTCCTAACGGCTTACCTACC 116033 29 100.0 32 ............................. TTGGCAACGCAACTAAAGACAAAAATGGCGAG 116094 29 100.0 32 ............................. GCGAGACGGTAACAGCGGATATTGTGCAGGCG 116155 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 116216 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 116277 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 116338 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 116399 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 116460 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 116521 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 116582 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 116643 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 116704 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 116765 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 116826 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 116887 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 116948 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 117009 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 117070 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 117131 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 117192 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 117253 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 117314 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 117375 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 117436 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //