Array 1 91504-92619 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNYI01000002.1 Escherichia coli strain MOD1-EC6185 MOD1-EC6185_2_length_382556_cov_38.3557, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 91504 28 100.0 33 ............................ ATTACCCAGGAAGAGCCGAAATATGGCGATAAC 91565 28 100.0 32 ............................ ACGGCGCACCCGTAAATACACAACAGATAAAA 91625 28 100.0 33 ............................ GTATACGGCACATTTATAGACCCCGAGCAACAG 91686 28 100.0 33 ............................ CCAAAAACTGGTGAACGCGGATTACCCGGTCAA 91747 28 100.0 32 ............................ ACATCATGAACGCACAGCAAAATGCCGCGATT 91807 28 100.0 33 ............................ AAATACGGCATTTGATGGTTTTGTTGTCGCCAT 91868 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 91928 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 91988 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 92048 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 92108 28 100.0 32 ............................ CAGTCCAGAACCTCGTCAGCGACGGTACTCGC 92168 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 92228 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 92288 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 92350 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 92410 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 92470 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 92530 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 92590 28 85.7 0 ....................A...C.CT | T,C [92610,92614] ========== ====== ====== ====== ============================ ================================== ================== 19 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGACTGTCTGGTAGGTTAGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 101678-102706 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNYI01000002.1 Escherichia coli strain MOD1-EC6185 MOD1-EC6185_2_length_382556_cov_38.3557, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 101678 28 100.0 32 ............................ TGAATAACCCGGACAGTCTGACGGAAGTGGCA 101738 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 101798 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 101858 28 100.0 32 ............................ TGAGGAAGAAAAACCAGCAGCGCCACCGGAAG 101918 28 100.0 33 ............................ AGGCGGCGTTTGAGGAACGCATGGCGCTGTGGA 101979 28 100.0 32 ............................ AATCTGGATGCGCTGGTGCTCGCCGTTCGTCG 102039 28 100.0 32 ............................ GCATATGAGATGAGCGAGCGATAACGCCTTTA 102099 28 100.0 32 ............................ CGATGAGCTGTCGATGAGTCGCCCTGCGCCCA 102159 28 100.0 32 ............................ CGCGCACGTCGTCATTTAATACGTCATCAAAT 102219 28 100.0 32 ............................ ACGCCCAGCGACTGACACCGATTGTGGTCCCG 102279 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 102339 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 102399 28 100.0 33 ............................ GTACACATTCGCAATCAAAATATATCTGCTAAA 102460 28 100.0 32 ............................ GCGCTGAAAGGTTGGCATGGACAGGAAGCAGT 102520 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 102580 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 102679 27 85.7 0 ...G...A...............-C... | T [102699] ========== ====== ====== ====== ============================ ======================================================================= ================== 17 28 99.2 35 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //