Array 1 108615-106412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTS010000003.1 Listeria booriae strain FSL L7-1588 NODE_3_length_213707_cov_24.936643, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 108614 30 100.0 34 .............................. CCATTTTCGAATCGTCATACCTCCCGTACCTGCC 108550 30 100.0 35 .............................. TCTATTAATTCTTGTGTCGTCGTCATCAGCTATGG 108485 30 100.0 37 .............................. TTTTCATAATTCAAGTACAACTCGGCGACGATTGTCC 108418 30 100.0 36 .............................. AAGCTCTATATTGGTTGATCGTCCTTGCATTCTTCG 108352 30 100.0 37 .............................. CGGCACACATACGCATCTATTCTATTCGCGGAGGGCA 108285 30 100.0 34 .............................. ACTTCATCTGTGCAATCAAAAACATCGTTTTTTT 108221 30 100.0 35 .............................. ACAGGAGAGAGTTAATATGGAGACTCTCACAAGTA 108156 30 100.0 36 .............................. CTATGATGCCACGCGTTTGTTTATAACGCAACTGGA 108090 30 100.0 37 .............................. GAAGTTGGTTTTTCTAACAAAATAACAGACATGATAG 108023 30 100.0 38 .............................. GCGGAGACTTTGAAAGACACGTTAGATGCGATAACAGA 107955 30 100.0 34 .............................. TTAATATAATACTCTTTTTCATTCTGCTCACTCC 107891 30 100.0 35 .............................. AAGGTTGTCCCTGTTTCTCCAGCAAAGATAGCAGT 107826 30 100.0 36 .............................. GAAGCGTGGAGATGTATACTACGCGGACTTATCTCC 107760 30 100.0 37 .............................. ATCAAAATCTGCTGGCGTAATAGCCAATGCCTCGGCA 107693 30 100.0 37 .............................. GATTTTAAATAGACTGTTATGCGCGATTTGTTCATCC 107626 30 100.0 36 .............................. AGTCGTGAACGCTCGTATGATTTGCGGACGTTCTTT 107560 30 100.0 36 .............................. ATTATCTATATCAGTTTGTGTAATACTAGGTGTATT 107494 30 100.0 37 .............................. AAGGTTTAGGCTTTCCAGTTGTATTAGCAAAGGTTGA 107427 30 100.0 36 .............................. GCTTTAAATTATGATTTGCGAAATTCAGCTGTTGTA 107361 30 100.0 36 .............................. TTTACTCCGCTTGTATTTCTGGTAGATACGTTTCTA 107295 30 100.0 36 .............................. ACTAACGAAGGATAACTATTACTCGTCAGAAATGAA 107229 30 100.0 35 .............................. AAACTTCTTTTTCTGCATCTACATTACCGTTTAAG 107164 30 100.0 36 .............................. TCCGTTGTTAACCCGTAGAGTTTTCGAGCTGTGGCT 107098 30 100.0 37 .............................. TAAAGTTTTGATAGCCAACATATTTAGCAACGCCATC 107031 30 100.0 34 .............................. GCAAAATGGATGGGCGCATTATTGATTCTTATTA 106967 30 100.0 35 .............................. TTCTTCGTAGGGTATATCTATCATAATGTCTATAT 106902 30 100.0 36 .............................. CTAGCAACGCTCCTTACGGTTTTAAAGTTACTATTT 106836 30 100.0 35 .............................. GACGATGCTTCAACAGTCTAAATTTATGTATCAAG 106771 30 100.0 36 .............................. ACATGCTTTATGTTCACATCACTTAAAAATAATGCA 106705 30 100.0 36 .............................. ACAATTAAAGCCTAAGGTTAAAGAATTCGCAGAGTT 106639 30 96.7 38 .........................C.... ATAGTTGGATCATTGATTGATTTTGGAATGCAGAAAGC 106571 30 100.0 34 .............................. TTGATCAAATCAATAGGTGACTCACGGACCTTGT 106507 30 96.7 36 ....................G......... AAGGACAAAGGCCAAACGGTACACTTTACAAACCCA 106441 30 76.7 0 A......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ====================================== ================== 34 30 99.1 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACACACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTGTATAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGAGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAATTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTGCCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAACACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATGTCACGTGTATCAATAAAGCTCGTCCGCGCATTGCCTGCAGGAATGAATAAATCATCATGTTTCTGAATAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 57913-60191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTS010000006.1 Listeria booriae strain FSL L7-1588 NODE_6_length_155884_cov_22.914965, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 57913 30 100.0 37 .............................. TTCTTAGCGCGGCAACTGCGGCAGGAAATACCGTTGA 57980 30 100.0 37 .............................. CTTTCTAGGTCGATATTCCAATAAAGAAGACGCCATC 58047 30 100.0 34 .............................. TTAATAATAAAGCTAGAGTGATACAAAGATTCTT 58111 30 100.0 36 .............................. TTCGGTGTATCGCTTGCTCGAATAGTAACATTCACA 58177 30 100.0 36 .............................. TCTTTGTACTCGATAGTAAGTTAACTCGTCGATTTT 58243 30 100.0 36 .............................. CACCCTTGATAATGATGGAAATTATGAGGAATTAAC 58309 30 100.0 37 .............................. TACACATTATGTTCACATTCTTTAATAATGTACTGCT 58376 30 100.0 37 .............................. TTCCCACTTTCATCAATTACCCATTCATCCTCATAGA 58443 30 100.0 36 .............................. ACGACTATTACAGCAGAAAAAGCTAAGATAACGCTT 58509 30 100.0 35 .............................. TTCATAAGGGTTACGAGGTGGATTATAAGACATGA 58574 30 93.3 34 AG............................ CGGTATAGTCCGTATTCCATTAGTTTTCTAAATT 58638 30 100.0 37 .............................. TTTCTCTGCTTGCTACAGCTACAGTTAGTACACTGTT 58705 30 100.0 36 .............................. TCGATTTCCGTGCGTACTCGTAAAGGCACACGCACA 58771 30 100.0 37 .............................. CATTATTACCTTGATTATTAAATTGATTCGTTAATTC 58838 30 100.0 37 .............................. TGCCACTAAGATTAATTGAATTGTCATTCGCTTCTGC 58905 30 100.0 40 .............................. CAACCAGCTCGAAAAAGAAATCGCAAGCAAAATGGCGGAA 58975 30 100.0 37 .............................. CATTGAGGGCAATCAACTTCAATGTAAACTGGTTGTA 59042 30 100.0 37 .............................. AGATAAGTTTTAAATATATGAAGGAGCAACGATTTTT 59109 30 100.0 35 .............................. CCCTGTAGTTCATTTAAAACGCCAGAATCTATTTT 59174 30 100.0 36 .............................. ATCAAAAAAGGTATTGACTACTTCCCTTTAGATGTT 59240 30 100.0 36 .............................. CGATTATCCCTCGTAGGTGAGGATTACCCGAAACTC 59306 30 100.0 36 .............................. GATACTGTAGCTGGAGCCCCTAAAACAAATAACGGA 59372 30 100.0 34 .............................. ACGTGAGGCTTTATTTAAAAGATTTTTGGCTCTT 59436 30 100.0 37 .............................. TGATAAGTGCATAATATTCGCCTGTGAACTCATAAAA 59503 30 100.0 35 .............................. TGCCGTGCGTCACATTAAGTTTTAGCTTTAACATG 59568 30 100.0 36 .............................. CGCGCAACAAGTCGAAAATCTGGTCGCGACTGGCTT 59634 30 100.0 36 .............................. GCGTAATTCTGAAAGAATGATGATTGATGCTCTGAT 59700 30 100.0 36 .............................. GAAGAAGCGGAAACAGAGGCGCCAGCTAAAAAAGCA 59766 30 100.0 36 .............................. TTTCAATAAAATATTCTATTTGCACACACAGCTTTC 59832 30 100.0 38 .............................. AAACCTGTGACAGTAACATTAATAACAGTAGTGACGCT 59900 30 100.0 36 .............................. TCGTTAGCATAAAAGACAAACGCCCAGAGCTTAACA 59966 30 100.0 36 .............................. AAACAAACGAAATACCAATACTACGAAGTAAATGAC 60032 30 100.0 36 .............................. TCGAGTACAGCGAAAGCTACTAAAACAGAGGTCATC 60098 30 100.0 35 .............................. TGGTTTGGAATTCCACCATCTTTTATGAATGCCAT 60163 29 86.7 0 .................A..-...C..G.. | ========== ====== ====== ====== ============================== ======================================== ================== 35 30 99.4 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGTATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAATAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGAAAAAGAGGGGATGGTTGATAAGTGGTGTTTGGAAAGCGAGGACCAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTATGCAAGGGATTGAGTCTATTTTCGAAGCTCGGGTTGTAAGGTTAGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATCGGGTACCT # Right flank : TTAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTACAGAAGCAATTATCATTTAACAGCTTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCCAGTATGGTGCGGAATTTGGTGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACCGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAACCTTGCGAAACAAATTGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 22525-22683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTS010000029.1 Listeria booriae strain FSL L7-1588 NODE_29_length_30751_cov_26.254874, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 22525 27 100.0 39 ........................... TCGTGTCACGCTCTGTTTTCACAAGATTCGGATTTAGAG 22591 27 100.0 39 ........................... CATTTTCATCATCCGTATTCTCCTCTTTCGGATTTAGAG 22657 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ======================================= ================== 3 27 100.0 40 TACCTCAAAACAGAAGAGGACTAAAAC # Left flank : ATATTTGCCGTTATCGACATTTTATTATATAATGTGATGAATAGTTTAGCCGATATCGGCAATAATATTTATAATGCAATTATATACATCGAAAGGGGTATTGGATATTGGAGAAATTTAATAAAGACTTTAGAGAATTTTGTTTAAATCGAGTAGAACAAACTTTGAATGAAGATCAACTGAATGATCCGTTTGTAGATTTACGAAAACGTCAGATGGATGTCGTAGAAAAACTGGAGGCATTTGAAAATAAAGATTTCCAAAAACATTTAGATGAGTTATTTATATGTGAGGTTGAGGCACGAGTATTAATTTATATGAAGGGTTTTCAAGAAGAAAGCTATTTTATTGGCGGGAGATAATTGGTTGAGTTTGAGAGATGGCTAATGAGCTGTCTCTTAATTTATGAAAAAATAATTATGCTTTGGTAATCTGTCAAGATGCAGCCCCGTTAATAATCTTGTATAGTTATGTTGTTACAAGCGAATAGGCGGGTATAT # Right flank : CCTCTGCTGTGGATAAATGAGGAATAATATTTTCAATTGTAATGGCTGTGAAGAGAAAAAATCAGCGCACAACAAAGAAGATGACAAACAAAATCCTCGCCATCTTCTTAAAATTATTTGCCACAAATTTGCCACACAGCCAATATTATAAGCATTGAAACGAGCACCACGAGTGTATCTCGCCCAACCATCAGAATCCCCGTTTCTCCGCTTAGAAAGAACGGAAAACACTGTAGATCGCTGTGTAAGATGCGGTTTATGGTGTTTTTTTGTATGTTAAATATGGTATGATAAAAGAAGAAATTAACAGTAGGGAGGTGTCATACATTTGGCAAAGAAGATACAATTACCAAGCGGTCGATTAGCGGAACACGCCAATGTGATTCAAGCAACGACGAATACATTAAAGTTACAACCTAAGCCGAACGTGTCTTATTCCACAGGTAGCGCACAACAACTGGTGGAAAGTGCTATGGCATTCGCACAAATGACAACAAGCA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCTCAAAACAGAAGAGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 26039-25738 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTS010000029.1 Listeria booriae strain FSL L7-1588 NODE_29_length_30751_cov_26.254874, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26038 36 100.0 30 .................................... ACAGGCGAAAACTTTACCTATGACGACGTT 25972 36 100.0 30 .................................... TATCGGTTGTGACCTAGAAGTTTTTCAAGG 25906 36 100.0 30 .................................... TCATTTGGTAATACTGTAGCAAAAATGATA 25840 36 94.4 30 ..........C...C..................... AAATTCGACAAAAAGCTAGAAAAAGCGATA 25774 36 83.3 0 ................A.........TG.A..C..A | A [25743] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 95.5 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : TAATACCGCTGACATTAATTCTGTTATTTCTTTATTGATTGCTTTGTTGATTGCTATTTTACGTTTATCTTTTTCTTTTTTGTTGGGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACCTTCATACGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATCCATTGGCAATTATCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAGG # Right flank : TCTATTTTACTTTCAACAGTTTAACTATACCAGATTATTAGTAACTCTTCATCTTCGCGTAATCACACGTACTAAGTAACTGTATTTAGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTAGGATACTTAACACCAAACGATTTTGAAAGAAATGCGAATTAAATTCTATTTATTTTTGTCCAAGATATTGACAACACATCAATATCGCCAATCGTTCACTTTACTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGAGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTATATTAGAGGCACTTTCCCCAGTGTTCACACCATATAGCACATC # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 29800-29500 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTS010000029.1 Listeria booriae strain FSL L7-1588 NODE_29_length_30751_cov_26.254874, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 29799 36 100.0 30 .................................... AAGGTGCTGTGGAGGAATTAAGCGGTGCAG 29733 36 100.0 30 .................................... CTTAGATAACGGGCTGTATAAAATCGACTG 29667 36 100.0 30 .................................... TTATCCAGGGATTGTTAGAAACATACGACT 29601 36 97.2 30 ................A................... CTAATGAGTATGCAGATGAAAAAGACCTAG 29535 36 86.1 0 ..............T............T.T.T...A | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.7 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : ACTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATGATTTCTTCACCTTGAAGTGTTATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAACGAATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAATCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAAAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCTAAACTAAAACAGAACACACCACTGTTATAGCAAGAAAATACTGCGTCATTTACTACTGATTGGATGAGCATCCTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTGTCCCACTTATCCACAGTAGAG # Right flank : GTAACATCATATTGCGTCCTCTTATCCTATCCAATTTCGTTTTGAAATTGACTACAATGCCCTATGTCAGATTTCTAAAAGTCTCTTCACTATACCACAATACTCTTCCGAAACCTGATTTGTTTCTATATAGCTATCATGGAATTTTTTTTCACCTAGATGTCTCAGTTTTTTTGGCTTTAAGCTTTTTATCACCAACCTATGTTTATTTTCTTTCAAGTTAGCAAATTCAACACTCATACCATGCCTATCTAAAATATCGATTAATGACTTGGAAACGGCATTCTTTAATTTACGATCATACTCAAAAATTTCTCTTAACCGCTCAGACAAATAGAGCAATGTGTAATCAGATTTGGGTGATAAATAATTTAGATGTGCTATACGATTCCTTGCTTCTTTCTCAGACACAAACAGTTCTTCTTTTTTCATGAATATATCCAACTTTTTAATACTTTTTAGTCTATTATCGCCCCAATATTTCACTCTCTCAGTAATTC # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 81735-80463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTS010000012.1 Listeria booriae strain FSL L7-1588 NODE_12_length_118222_cov_23.090677, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 81734 30 100.0 34 .............................. AAAATCGCGGCAACATCTTCTGCTTTCTTTTTAT 81670 30 100.0 36 .............................. TCTGGTGAGAAGAAAATTTATTACAAAGGCGGAGGA 81604 30 100.0 34 .............................. TGATGCAAGACCGTAACCTACGCGCTCCATTATT 81540 30 100.0 34 .............................. GTAGCTGGATCTTTAGGCTCAGGGATAACAGACA 81476 30 100.0 38 .............................. TGAATTTATAAAACACTTCAAATGAGTAGTTGCCTGGC 81408 30 100.0 34 .............................. ATATAAAACAAGTATTGAAAGAACCATCTGCATT 81344 30 100.0 35 .............................. GGACTTCCAGATACATCAACCTTTGCTAATACAAC 81279 30 100.0 35 .............................. CCGAACCCTTTTGCTTTCCAGTAATTCCACATATT 81214 30 100.0 32 .............................. CTCTATCCAAGTTGGCGGTACTTCGCCTTTTG 81152 30 100.0 37 .............................. CAAATACTTTATATAATGTAGCAAAGAAGCCGGATAA 81085 30 100.0 36 .............................. ACACGACGGCATAGCCGAATGGCGCTATGAAAACAT 81019 30 100.0 35 .............................. TCATGTAAGAAATAGCGAGGGAGAAATGATTTTTA 80954 30 100.0 35 .............................. AGAATTCAAAGATTTTTATACGGCGAATCGTATGT 80889 30 100.0 36 .............................. GTCATTCTCCAAGCAGGTATCGATATTTTGTTAGCG 80823 30 100.0 34 .............................. GTGAGAATTTGGGGGATTTGGATGGCGTGGAAAG 80759 30 100.0 36 .............................. TAGATATACCATTAAAGTCAAAATTATTTTTTATAA 80693 30 100.0 40 .............................. TCAGGAACACTTGCAGAATATGCAGACGGCGCTGGCTAAA 80623 30 100.0 36 .............................. AAAAGAAGACACAAACTGACGACACAAAGGACTAAG 80557 30 100.0 35 .............................. CAAGTTAAAAAATTCAGTTATACCGTGGTCGATGA 80492 30 90.0 0 TG.....................A...... | ========== ====== ====== ====== ============================== ======================================== ================== 20 30 99.5 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATTTGAAAAGCTGGGAACCATTCCAAAAAGAAGCGTTACAACATGAAATGAGCAATTTTGAAGTGCTAGATAAAGAACGCCTTGTTCAGAAAACAACATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATGATTGTGCAAAACGGGAAGAAAAAGATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTATGTATTGATACTAAAGGGGTTAAGCCTATTTTCGGAGTTTGGATTGTAAGGTTTGAGGGCAATAATTTAGAATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : AAGAACGACAACAATGACAATGTTTTTATCCAATCCCAATGTAAATATGAAACTCCCCCATAAACATAACATCCCCCAACCCAATAAACTATAAGCAACCACTAAACTACCCAAAGTCTATAAGTGTTTTTTGTCATGCTCAAAAAACCCATAGACTTGCTTACTGTAAATGAAACAAATAGGAAGTATAGAATATATTTCATACATTTAAAAAATATATTGGTGAAAAACATTTACAAAAATAAAATAATAGTGTAAAATTCTTTCTGAAAGGAGCGTTATGATGAATATAAATACACTAAAAGGACAATTGATAGTATCTTGCCAAGCTTTAGAAGGTGAACCTTTGCACAGTTCCATGATTATGGCGCGAATGGCGCTTGCTGCTAAAGAAGGTGGTGCTAAAGGAATTCGAGCAAATTCTCCGGAAGACATTCAAGCAATCAAAGGACTAGTGGATTTACCTATCATTGGCATTTGGAAACGCGATTATGAAGGTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 85861-85564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTS010000012.1 Listeria booriae strain FSL L7-1588 NODE_12_length_118222_cov_23.090677, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 85860 31 100.0 34 ............................... AGAAGAAACAATCCCCCTCTGCAAAAAGTACGAT 85795 31 100.0 37 ............................... CATATCCCTGTGATTCTAGATACTCTACATATTTTTG 85727 31 100.0 36 ............................... TCCGAGTTTTCGAGCTCTTTTGTCATTTCCCGGATG 85660 31 96.8 35 C.............................. GATAATATATAAAGAAATCATTGCTTGGTCAGAAC 85594 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 5 31 99.4 36 AGTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GCAAAAATGATCAGTTTCTTAAGATTAAATCGTAAACTAAATCCATGACGACTATTCCAAAATGCATCCAATAATATTAAAAATAGGAAGCATTTTAGCATGGGAAGCCTGATTTGAAGTGCTAGATAAAGAACGCCTCATTCAGAAAACAACATTCGGCGCAAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAATACGAAAAGAAAATAATCCCTGCGAATAGCGCGATGAGTGTGCAAGATTGGAAGAACAAGATAATTTCTACAGAAAACCTTGATTCATAATAACGCGGAAAAAAATCTGTCGACCTCCAGTAGTGCAAAATGATGGGGGCATCGACAGATTTTTGTTATGTATTGGGACTAAAGAGTTTAAGCCTATTTTCGAAGTTCAGATTGTAAGGTTTGAGAGTGGAAATTTAGGATTTGGCTGCCTGTCGACAGATTCGGGTGTTTGAGGTATGATGGAAGTAAGCGTTGATGGGGTACC # Right flank : TAAGTCAATTAATAACCATGATGTAGACGCCTAATCGTTTTTACCTAAGAAATATGCGAACATAGCCCATAGGCGATTATCTACACATTTCCTGAATATATGAGGCTAGCTTAAGTATTAAAAATAAAAGCCGATACTTAAAGTACCAGCCTCATAAATTTAATGTATTCATTTAAGAAAAATGTCTTTGTGGAATTCCAGTTTGTTTATTTAATAATTTTGTTCGTTTGCTATCTTTATAAACATACAAATCATTCCTATACTGGTGATTGTTGGCGTATTGTTTGATTGTAATGTAAGCGGTCTTATTTTTAAATTCGCTTATAATACCATACACAGAAAATGCCGCGGCTATCCAACCAAGACCTGGAACTAATCCTAGTCCGATCAACAGCTGCACTTGCCTTGCTAACTTTTGTCATCGTAGCTGTAACCTTTCTGCTTGTTACTAGTTTCATTGAGCTATTTGAACTTGCTCTTAATAATAGGGGAGTTGAGCT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 90365-89412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTS010000012.1 Listeria booriae strain FSL L7-1588 NODE_12_length_118222_cov_23.090677, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 90364 30 100.0 35 .............................. AAATTAACAGGGATGTTTATTCGAAATGACATTAC 90299 30 100.0 35 .............................. TATGATAACTTATTGACATTCTCATACACAGATTA 90234 30 100.0 37 .............................. TTTCTCGGCTGTGCCGTACGACGATTTCTGCACGTCG 90167 30 100.0 37 .............................. TTGGCATAAATTCAAAGCATTATTAACATCGCTTAGC 90100 30 100.0 37 .............................. TTGTTATCTTTTGTAGCACGATATTTAGCACGTTGTT 90033 30 100.0 36 .............................. GAACTTCGCATTCTTGGTCACCAATTTCTTGTGTCG 89967 30 100.0 36 .............................. TTGTATAGCGTTTCGCTTTATACTTATACTGCCGTT 89901 30 100.0 36 .............................. GATGCTAGTACCTTTCTAACGGGTTCCGTGATGGGC 89835 30 100.0 35 .............................. TTATATCTTTCCTTTCTATAGCGTCATACACATAT 89770 30 100.0 35 .............................. CGTACTGTTTAATATGGAGAATAAAGCCTTATCAA 89705 30 100.0 36 .............................. TTGTCAACACTTGAGACAGCCAAGAGAGCAGATATG 89639 30 100.0 36 .............................. TGAACTTTAGGAGAAACGTACTTAAAAGGTTTCATC 89573 30 93.3 36 ............GT................ CGGGCATACTTAGCCAAGAAAACTGAAAAGTATATG 89507 30 90.0 36 ............G...C...A......... TGATAGCCCGCTGGATTTTTTGTTTCTTTCACGCTA 89441 30 70.0 0 ........A......A.TC.A...C..GTA | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 96.9 36 GTTTTTATCTAAACATTGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCCGGCACAACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTTGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCATAGGGAGAGAAAGGGGGAGGATGGTTTTCGAGAGGTATAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTAAGAGGGTACCT # Right flank : GCGTATCGGCAATTTCACACAACCCATCTACAAAAATAAAAAAATCTGTCATCCTATCAAAATAAAAAGAGGGACATCGACAGATTTTTTTATGCAATAATACATTACCCGTATCTCTCCAAACAACCGTCTAAAAAAGGTATTACAACAATGGAGCTAAAAATATAGTCGCCAGCCCGTCCACAATATCATCTTCTGTATAGCCACTGACTGTCAGTTGACGAATTAAAAGTGGATTCAGCACAGCTGCAATGGTCGTGCTCCAAAAAAATGTATCCACATCTGTATCCACTTGCTCAAAAATGGGCTGGATGAGTTCTTGTACAATGACAATAGGTGGTGGGGGGCTATTAGGCACTTGATTATTGTTAACCAGATTTCCATCTATATGAGTAAGCATCACCTCTAACCAACTACTATGAGAAGAGATAAGAGAAACCAAGGCTCGAATTATAAAAACGCCTTTATCGTAACTTGTAGCTTCTTTATTATCATTCATA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAACATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //