Array 1 10757-12289 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPBS01000060.1 Campylobacter concisus strain AAUH-39CDrec-a 1099416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 10757 30 100.0 36 .............................. GGTAATTTTTTGCCTAACACAAATTTACTTAACATT 10823 30 100.0 37 .............................. GGTGTATTCTCGCCAAACCTGGATCGAGTAGAATTAA 10890 30 100.0 35 .............................. CCAAAATCAAGAACGCAAGAAGTAAAAAAATAAAA 10955 30 100.0 37 .............................. ACAAGAACTTGAGCAACACCAACACGATCAGAAAAAT 11022 30 100.0 36 .............................. TCTAAAAAGCTCTTTATCGCATTTAACCTTTGTTGC 11088 30 100.0 35 .............................. GAGACCATAAAAGAGCGTTTAGAAAATGGCTTTAA 11153 30 100.0 36 .............................. GTGCGTCATAAAGTATCACTCTTGATCCTGCAACTT 11219 30 100.0 36 .............................. CTAGGCAATTCAGTATCAAAAAGGTCTTTAAAATTT 11285 30 100.0 33 .............................. TTTGCTTCAGCTTCAAGATCGTCAATATTACTT 11348 30 100.0 35 .............................. GCATATCGACCAAGCGGAGAGAGTAAAGCGATAAC 11413 30 100.0 36 .............................. AAGAAAAATCATATCTAGAAGCATTGAGACGAGCCA 11479 30 100.0 36 .............................. TCTTTGGCTATATGTTGCCACAAACAAAACGCAATA 11545 30 100.0 33 .............................. TTCGGCTTGAAAAGTAGCCGATACGGTTTCTAT 11608 30 100.0 35 .............................. CGAGTATAGAAGTAACTACTGAAAGCGACCTTTAC 11673 30 100.0 34 .............................. CTATGCTTTCAACGCTACAATTCCTTAGCCCATA 11737 30 100.0 36 .............................. AGGCGATATTAGCGGGTGCGATAAAAAGGATCGGGG 11803 30 100.0 35 .............................. AAACTCATTGCAAACCAAAAATCTATCTACAAAAC 11868 30 100.0 35 .............................. CAGCAACAAGAGAACCAGGAGCTAAAGAAGCGAAG 11933 30 100.0 38 .............................. GATTTTAATCGTATGTTATTAGCTAGAATAATGCGAGA 12001 30 100.0 34 .............................. TGCAGCCAGACGACAAGGCATTTTTAAAGAGCGT 12065 30 100.0 35 .............................. TACTCAGCGTCGCTAAATTTTATCTCGCAGATAGT 12130 30 100.0 37 .............................. TAGGTAGCTATATCACTTCTAAGAGTTGAAGGGCTTA 12197 30 96.7 33 ................C............. TTACCGATAATGAGTGCGTGGCGTATATAGTTT 12260 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 99.9 35 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGAGACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTCAAAAAGTGCATCTGCGAGGACGCGCCTTATGAGGGCTTTAGGTGGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTGGGGCTTGGCGTATTTACACATGGCTAAATTTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : CTCGCCGAGCATGATTGGCACCAACCGTAATCACTCTTTTGATAGTCGTTTTTCCGGAGCAGTTCCATACAAATTTTTAGTTGGTAAAGTTAGGTGGCAGATATTTTGACATAAATCAGCAAAATGCCTTGGCTAAAATTCTGGTAAGATCAAAATGAAACAAATTATTATATCAATGAAATTTTGAAGAATGTTGTGAAATTTTTATCAATTATAATTAAAATAAATTTACAAAAACCCGCTTGTAAAAACAAGCGGGTTTTTAAATATTTTATTTCTCTAGTTTATCTTTTTTAGATTTAGCTTTTGAAACGACTTTTTCTTTCTTATCTTTTACCTTGTCAGCAACTTTATCTTTTTCATCTTTTGCTTTTTCACTCATACTAGTTTCATCTTCTTTACTAGAAGTTAGCTCTTCTTTAGTTTTAGAAGCTTTCTTTTTAAATTTATCTTTTTTATCAGAGATTTTTTCTTTCATCTCGTCTTTTGCCTCATCCATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 10470-9813 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPBS01000038.1 Campylobacter concisus strain AAUH-39CDrec-a 1099393, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 10469 37 100.0 40 ..................................... CAAGTACCATCCATAAAAGACACCCAGCCCTCCCATTCCT 10392 37 100.0 39 ..................................... ATTACTACCTCCATAGTTTTGAGTAGGATTAATCTGTAA 10316 37 100.0 42 ..................................... AATTGCAAAAGCAATTTTAAACCTTAAGATCTAATATTAGAG 10237 37 100.0 42 ..................................... AATTGCAAAAGCAATTTTAAACCTTAAGATCTAATATTAGAG 10158 37 100.0 39 ..................................... AACAAAGCTGGAGAAAATTTCTCAGGTGTCACAAAAAGC 10082 37 94.6 39 ....T......T......................... AATCATACCTTTCTCCTGACTATTGCAAAGTTCTTGCAA 10006 37 91.9 40 ..TA.......T......................... TTTTTGTTCTGATGAGAGGCAATTCATAAAGTTCTCTTTT 9929 37 100.0 43 ..................................... ATCCCATTAGATGGGACAACAGCGGTAAACCCTAAGGCAACAG 9849 37 94.6 0 ..................A.................T | ========== ====== ====== ====== ===================================== =========================================== ================== 9 37 97.9 41 ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : AGCTGTATGGCTAAAAGCGAGACCTTAGGCGAGGGCAAGATATTTTGCCCAAGCGACACCTATGTCTAAGCGCCTTTTTTAGGGATTTGATTTTCGAACTTTTCTAAATTTCAAAACGCCCTTTTTTACCGCACTTTTATATTTTATTAAGTTTCAAAATCTTCGAAAATCTCAAATTTCTCTATCCCAAAAAAGACTTTCTCGAACTTTTGCATTTTTGCACTTTTTAAAGTTGCCTTTTTTAGGCACTTAGCATAGAGCCCAAATTTGCCAAAATTCGAAAATCACATAAATTTTCACTTTTCATTTTAGATTTTCGAACTTTTTAGCTTTCATAAATGCCCTTAAATTCGCTATCTTAAGCTATATATAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAAAGAGTAGTTCTTTTAAAACTCATTGTTAATTTACAAGCGTTTTTTGGGCT # Right flank : GGACATATCTATCGAGCATAGTTCTCAAGCATTAATTCATAGATACATTTCATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCGTCATATTGACCATATCTGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGTTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGATACTTACTACAAAGGTACTGACATATGGGGCGCTTCGTCATTTGCTCTTGGCTTTGATGGCAAATATGGCTTAGCGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGTCATGCTGGTGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //