Array 1 159083-159312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXFC010000001.1 Bifidobacterium pseudocatenulatum strain YIT11955 YIT11955_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================ ================== 159083 24 100.0 27 ........................ TCCACGGTGCTTTTCCGGGTGTTTGTC 159134 24 100.0 27 ........................ TCCGGAGGTTCATTTTTGGTCTTTAAA 159185 24 87.5 27 ......A.....CA.......... CGCACGGCATCTATTTCAGTCTACGGA 159236 24 100.0 28 ........................ CTTAGGTGCTTATTTTGAGCCGCTTGTG 159288 24 83.3 0 C...........CA.......G.. | C [159311] ========== ====== ====== ====== ======================== ============================ ================== 5 24 94.2 28 TGTCCGTTTCTGGTGAATCGGACA # Left flank : GTATGGCGGTCGAGCAGGGCCGCGCGGATTTCTTCGCGGCTGACGAGCGTGGCCGGGTCGGGTTGGTTGTCGAAAGCGTGCTGGCGGGCGTCGATCTGCGCCTGCGATGCGGATGGTTCAAAAGTCATGGTTGTTCTCGTATTCTCGTTTTCCGTTCGTGCGTTGTTTTTGCCGGGTTGGTTGTGTTTTGTATGTTCTTGCGATTGTTACGCGTGCATTGCGCCGGTCGTAATCGTAAGAAACTTTGAAAGTGGTTCAGCCGCCCTGCACGAACGTGACGATTTCCAACGTATCGGTGCCCTTGAGCTGCGTCTGCGCACGCTGGGTGCGAGGCACGATCTCACCATTGAGCTCGACAGCCACGCGGTCGGCGCGCAGGCCCTTGCTTTCGATCAGTTCGGCCACGGTGATTGGCGTGGCGACGTTCTCTTCCTTACCGTTGATGATCATTGCGGTTCCCTTCTGTGTCTGTCGTGACACATGCTTTCCTGCACTCCGGA # Right flank : CTCAAGGTTGGTACGAAAAAAGGGTCGCCGAAGGAACCGTACCCTATGAGGTGGTGCGCCCCTCCGTGACCCTAATCACGCGATATTCGGTTATCGCGAACGGAAGATGAGATACGCCTTGCGGCGTGAACAACCCGTCTCCTTACGGCGGCATTACCCGCATCAAGTCCTCGGTCGAAGCTCCGTGAGCTCCCTCTCAGCCTTTCGGCTCCCGTTCGGTTGTGCCTTCATCTTCGCGCACGCGCCCGACAAGCTTGCGCCGGTTCACGTTGGGTTAGTCTTGAGATGAACGTGTACGAATCGGCTATGTTCTTGGAAGGAAGGGGAAGATGATGATGAACGGTGAGTTGGCAGGATTTACGATTCCTCGGCTTGGTATGGGAACGATGGCTTTGGCGATTGAGGGGCGTCCGGATCGCGATACCGCGATTCGTACGATTCATGCCGGTTTGGACGCGGGTGTCCGCTATTTGGACACGGCTTGGTCATATTATTTGCCG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.10, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGTTTCTGGTGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 266061-268076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXFC010000005.1 Bifidobacterium pseudocatenulatum strain YIT11955 YIT11955_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 266061 36 100.0 30 .................................... CATCACGAGTCTTCCGCGACCAGGTCGGCG 266127 36 100.0 30 .................................... ATCTGGTAGAGGCGGTCGGGGCTGATGTTG 266193 36 100.0 30 .................................... AGGTCGGAGACGACAAGCTCCCGTTCGTGA 266259 36 100.0 30 .................................... GCAAAGGAGGACACGAAATGAGCTCCCCAA 266325 36 100.0 29 .................................... CCTCGATGTGACCGTCCGCGAAAACCTTC 266390 36 100.0 31 .................................... TCCATTATATCTAGTATGCGATACCGGCCAG 266457 36 100.0 30 .................................... ACACGACCGGCTGGCAGTATTCGGACGTGA 266523 36 100.0 30 .................................... TCCGCATGGAACACCACAACGGAGACGGCT 266589 36 100.0 30 .................................... AACACTGATTCCACCAAGAGCGCACAAGCT 266655 36 100.0 30 .................................... TGGCCACCGGATTGTATTCACATGTGCGGC 266721 36 100.0 30 .................................... CCTTCACGTCGTCGCGGTCGCCGGCCTGTT 266787 36 100.0 30 .................................... ACAGGAAACGCAACGTCGCAAACGCCACAG 266853 36 100.0 30 .................................... ATATTATCTAAATTTACGTCCAATGCGCGG 266919 36 100.0 30 .................................... ACCATTCTGAGAGGACTGCCCGGCTCGGGA 266985 36 100.0 30 .................................... CGGGGCTGTGGTATTGGTTAATACGGGTGG 267051 36 100.0 30 .................................... CTACACGGTGTTCGGCATCTCGAAACGTTC 267117 36 100.0 30 .................................... TATCCGCTCCAGTCGTCCGTGTTGGACTCG 267183 36 100.0 30 .................................... GGCCACGCTCGATGACATGTATCTTCATTT 267249 36 100.0 30 .................................... TCAAGTGTTCGATGAGTTCGCCCAACAGGG 267315 36 100.0 30 .................................... TGCTCCGTCTTGAATTTCTTCTGCCATTTG 267381 36 100.0 30 .................................... TTGTCGTATCCGCTGTCAACCCACGCCTGA 267447 36 100.0 30 .................................... GAAGGACGGCACTTGGAAATACAAGCGCGT 267513 36 100.0 30 .................................... ATGCTGGAACTGGCGCAAACGTACACGTTG 267579 36 100.0 30 .................................... GTTGTATGCGGCGTATGCGGCGCGTATTTT 267645 36 100.0 30 .................................... GTATTCGAGCGCCGGACGTTTGGACGGTTG 267711 36 100.0 30 .................................... AGTGGATGGACTCACGACGTCCGATCCTCA 267777 36 100.0 30 .................................... ACCGACTTCATCTCCGACGCGAAGGCCGGA 267843 36 100.0 30 .................................... ATCTATCGCATGAGGAAATTTGATGATGCG 267909 36 100.0 30 .................................... GCGTATCCGCTTCCATGACTTCGGCGGTCA 267975 36 100.0 30 .................................... CAATTCACGCTCACGCCGATTCCACGCCTC 268041 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 100.0 30 GTGGTCTAAGTCTTTGATCTGACAGGCATCTGAAAC # Left flank : TTCCCCGCGCCTAGAGGGGACGCCGGTGCGCTCCTCCTCGAGCCGGTCCGCGTACCACGACAGCAACGCGCCCTTGCTGGGATAGCCAAGCTCGCGGATCACGTCGGCGGGCGCAGCGCTCGTATTTGACGTACAGGTCCACGGCCCTGTCACGCTGCTCCCTGCTGTACTTCGCCATAAGGGGTTTTCCTCCCGGTCGGGGAGTCCAAGAAAACGTCATCACCTCGTTCGGACTGGATTGACACGCCATTTTGGACTACTTCAATTTAACAAAACACATTGCGCATGGATAACGTCCTCTTCGCCCCTAAGACGGTCGAGAAAATTCTGATAATCGTTGATACCCATGAGCACGTAGGACAGCGTTCCGTTTGACGACAAGGACCGGCGCACGGTCGGCCTTAGACAGCACCGTAGCGGTGCGTCCATTACTGAGTTCGCCGACTGGCACAAGATCCTCAAGCACAAACTCTGTCAAGGTCACATCCACTTTCCCTCCG # Right flank : CCGATAGCCTTGGAGAATCCTGAACGTTCTATGAGAACTGAACATAATCTCCATCGATATACCGACTTCTTCCCTCTGTCAAAAGGACTTTTTTGTCGCAGCATTCCAGGTCCAGAAGCTGCATATGGTGTCTTAATAATTCTCGATGCAAATAAAGTAATTGGCCATTATCACAATATTGAGTTATATGAAGCATCACAAGCATCCTGCCCTCGGCAAGAGCGCCGGCAGTATCAACTACCAGTTGAATTTTATCATAAAGAGAACCCAGAGAACTGGTATCAACACGCGGTTTAGCCATTGCTATCATTGACTTTATATCAGCTTCATCAAGAATACTCAGAGGCAAATTCTCTCTCCATATTTCTTCTTGAATAATCGACTTTATCTCAGTTTGTAACAACAATAATCTACTCAATTCTTCAGGATTAAATCCGTCATTTAACTTCTTAACTGCAGCCTTTTGAAACAAAGCATCATAATCTAGTACTCCTGCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCTAAGTCTTTGATCTGACAGGCATCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //