Array 1 26083-23994 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVU01000052.1 Streptomyces minutiscleroticus strain JCM 4790 sequence052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26082 28 100.0 33 ............................ GCATCTCCGCGCTCATCGGTCCACCTCCGGCAT 26021 28 100.0 33 ............................ CGAGAACGGGGAGCGCTGCCCCTGGCCGTGGGA 25960 28 100.0 33 ............................ CCTGTCGACGGTCATGCGACTTCCCCCGCCCGG 25899 28 100.0 33 ............................ GAGGGCCTCGACGGCGGGACGGGCCCGCCGTCA 25838 28 100.0 33 ............................ TAGAAAAGGCGGCCCTCGGTGTCGTCGTCCGAC 25777 28 100.0 33 ............................ CTCGGTGAGCACGTCCGCCCGGAGCTGCTGGAG 25716 28 100.0 33 ............................ GGTCTGGTCGGAGTGCCCGGACGCCGTGGTGCT 25655 28 100.0 33 ............................ GAGGCCGAGCGCGTGCGCCGGGACGAGCCCGTG 25594 28 100.0 33 ............................ CCCCGTCAGCGGAGTTGTTCGGCGCGGCCTGGA 25533 28 100.0 33 ............................ GGCGCGGAAGAAGAACCCGCAACTCCAGGCCGC 25472 28 100.0 33 ............................ CGCCATGGCCGACCCCGGACCCGCTGCCCGTTC 25411 28 100.0 33 ............................ CTGTTCAGCACGCGTTCGGCGTCGATCAGGACG 25350 28 100.0 33 ............................ TTCCGTACTGATCACGCGTCACCGGTGCCGCGG 25289 28 100.0 33 ............................ CTCCCCCCGGCTGTCCGGAGAGGCCACGGTGTG 25228 28 100.0 33 ............................ CCAGCTGGAGAAGCTGTTCAGCCGCCGAGGCGA 25167 28 100.0 33 ............................ GGTCTCCAGGATTCGGGTGTCGGCGGCCATCAG 25106 28 100.0 33 ............................ GTGCTACACCGAGGCGGCGGCCTGGGCCTGGGC 25045 28 96.4 20 ..........................G. TGAGCGCGCGGTCGGCCGCA Deletion [24998] 24997 28 100.0 33 ............................ GCGCGGGACCCACGGATGCCGGGGCCGGGCCGG 24936 28 100.0 33 ............................ GTTGCTCGTGAGTCACCGCTTCTGGTTCCTCTT 24875 28 100.0 33 ............................ CCGCGCCCGCGACAGCGCCAGATGCGCGACGAT 24814 28 100.0 33 ............................ GCGTGTGCGGGATCAGTCGGGGACGCCGGGGGA 24753 28 100.0 33 ............................ TGCAGACCCGTTACCGCACACCCCACAAAAGCG 24692 28 100.0 33 ............................ CTGGACCAGCCGTCACGACGGCAGTCACGGCGC 24631 28 100.0 33 ............................ CGCCGGGATGAACGTGTCCGCGAGCTGCACCAG 24570 28 100.0 33 ............................ CCCGTTCTTGTCCGGGATGTACGAGGTGCCGCG 24509 28 100.0 33 ............................ CCGGCGGCGCCTGGCGTCGAGAGCAGCCTGCGC 24448 28 100.0 33 ............................ GCCGACGGTGATCACTTCCACGTCCGTCGCCCA 24387 28 100.0 33 ............................ CACCGCCCCGGTGTCCTGCCGGTCCAGCAGGTG 24326 28 100.0 33 ............................ CGAGGTGGCCAACCGCGTGACCGCCGACGAGAC 24265 28 100.0 33 ............................ CGAGGACTTCGCCAGTCTGATGGCCCGTACGGG 24204 28 96.4 33 .............T.............. CATGATCAACGCTGGCAGGAGGACGGCGGCCTC 24143 28 89.3 33 ....C.................C..C.. GGTGTCCCCAACCCCGGACAGGCCGAGCTTGAG 24082 28 100.0 33 ............................ CTACGTCAAGGCCGTGTGCTCCTGCACCCCTCC 24021 28 82.1 0 .....................T.GC.TA | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.0 33 GTCGTCCCCGCGCCTGCGGGGGTAGTCC # Left flank : ATCCGTCGGCAGCCGCCCCCACGTCAGCCCCGCCGCCAGCACCGGTTCGGCCTCGGTCGCATCCATGGCCTGGAACGCCGGGCACGCCTTCCCGCAGTCGTGGATGCCGCATAACCACATGAACCACAACCGCCCCCGGCCACCGCTGATCTCGTCCAGCCGCCGCCGGAACGCGGCCGACACGTACCTGTCCCACATCAGCCCAGCCACAGCGGCCGTATCCAGCAGATGCCCCAGCAGAAGGTGGGTCCGCCCATCGTTACGCGCAGCCGACTTCCCCCAGAGCTGCGACACCCGCGTGATGGCCTCGTCGGGCAGGCCCATCGACCGCATCAACTCGACGATCGACCGCTCATCCCCCACACTTACCCCCGATAGACTCCGCTACCTGCAGTCAGTTGTGCGGCACTGTAAGCGGTACCACTGACAATGCCCTGCGAGGATCAAGCGAGGCGAAGGAAAATAGGCATTCCTGCCTCCATCACCGCAGCTCAGGAAGT # Right flank : TGGCCCGTGGAATCCGCAGGTACCTGTGTCCTGCGGTTGCTGTTGAGGAGCGTGTTGATGAGGCGCTCGGTTTCGGTCTCCAAATCACAGTCGAGTGCTTGGTTGACCTGCTGTACGTGGGAGATCACCACATGCAGCCCGGCCCGGTTTCCGGCCACCCACTCGATGCGCATCCATGCCCGATACAGCACCTCGGCTGTCTCGTCCACCTCGAGCCCGGTGGCGACGGCCCGCCGGGCACGGCTGAGGTCGTGGTGGGGCCCGAGCGGCAGGCGGTAGGTGGCGACGGTGTGGGTGACATCGACGATGCGGGTGATCATCTCCTGCTGGTAGGGCTCGGCCCACGGCAGCGGCTGGGTGCCGAACGGCCGCCCCCGCACGAGTCCCAGGGCCTTCTCCAAATCGGGCAGGCCGTCCGGCCCCTGTGCCAGACCACGCTCGACCAACTGCAGGAAGCGGTCCCAGTCGCAGCGCACGGCGGGGGAGAGGAGATAGGGGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 41369-39915 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVU01000052.1 Streptomyces minutiscleroticus strain JCM 4790 sequence052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41368 29 100.0 32 ............................. GCCGTACAGGCCGTCTGAGAGGGGAATGTGTG 41307 29 100.0 28 ............................. AGGGAAGCTCCGCTGCCTGCTAGCGTTT 41246 29 100.0 0 ............................. - Deletion [41218] 41222 26 86.2 32 ---G......................... CGCCCGGCGCCGCACCGGGCGGTTCGGCGTTT 41164 29 100.0 32 ............................. GGTCATGAGGAAACTCCTTGTGTGTGTAGGGG 41103 29 100.0 32 ............................. GGCATCACCAGCGCGCTCGGCAAGAACAAGAA 41042 29 100.0 32 ............................. CGGGCGTACTGATCGCGCCGCCCAGCATGGTG 40981 29 100.0 32 ............................. GCCGTCGTGGACGCGCCCGCGGCCGCGAGGGC 40920 29 100.0 32 ............................. CCACCACCGTCCAGACCGGCGCCGAAGTCGCC 40859 29 100.0 32 ............................. TGCCCATGCGCCAACAGCCCGGCGATGAACTG 40798 29 100.0 32 ............................. GCCCGCTCCACGGCCAAGCACCGCGGGCTGAT 40737 29 100.0 32 ............................. CACGAGCTGCTGCCGATGTACGGGGCGACCGC 40676 29 100.0 32 ............................. CTGACCACCGGCCCCAGCCCGGCCAAGGACGA 40615 29 100.0 32 ............................. GGCCAACCGGTCCGATGGTATGAGCCGAGCCG 40554 29 100.0 32 ............................. GGCATCAGCACCTCGTCGCCGGTCTCGACGTC 40493 29 100.0 32 ............................. ATCTCGGGGAACGTCCAGACGACGCGGCCTGC 40432 29 100.0 32 ............................. CTCGACCCGCAGACCCGCCCGGCGACCATGCT 40371 29 100.0 32 ............................. GGGCGGGTGCAGTTCTACCGGCGCCGCATGAC 40310 29 100.0 32 ............................. CGGGCCAGTGCCTACCCCGAGGCCGTACACAC 40249 29 96.6 32 ............................T GGAATCTGTCTGTACGCCTGGCCGGGCAGGGC 40188 29 100.0 32 ............................. GCCAGCGCGGTCTGCCGCGTGGCCGGCGTCAT 40127 29 100.0 32 ............................. GCTGCAAGGGAATTGATCCAGCCGTGACCAAA 40066 29 100.0 33 ............................. CTGCTCAACCCCGGCCCGGGGGAGCTGGCCGTG 40004 29 100.0 32 ............................. CCTCCTCCTCGGGCCAGCGCTCAATGGCGTCC 39943 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.3 31 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TCAACCGCACGGGCGGCCTCGTCTTCCACATCTCGCCCCACGAGCGCCCGCAGCCGAGATCCGGCAGGTGCGCGAAAACCGTCCCCCACTGCGCATGCACGGCCCTGAACGCCATTGGATCCTCCCGCTTTCTCGAGAGGATCCCAGTGTCGCGTGTGCCACTGGCAACGCGTCGGGTCGCGATTCGACCATGCGAGATCCTGTGTGGGGGCGAGCGCAATGGTCACCACCTCCTGCAGAGACCGGACCCGCAGCCGTGCGCCGTCGACGGCATCGCGACGGCCCTGCCCAGGACGTGGGACAGGGCCGTCCGGTGAGAGACGTTCCTGCATGTCGTACAGCCCACGAAGGCGAGCGAAGGAGCGAGGCTGGCCCGCCGAGGGCTGTAGCGTGGTCCGGCGTACTCAAAACGGAGCTGGGGGTATATGTGTCGTTTGCCGGAATTTGTAAACGTTGCCGAAACCGCGCTCAGTCTGAGATAAACCCGCAGGTCAGCAAGT # Right flank : ACGCGGACGAGAGGTTCGTCCGCGGGTGCGGGGAGCAGGCCGCCGGCGCGCGCGGTGGTGCCGGTCCTGGGACCATCCCCGCGGGTGCGGGGAGCAGGACGCGGTTGAACGGCGGACCGTAGGCGACGGGCGACCACCCCCGCGGGTGCGGGGAGCAGGACCAGTACGTCCTGTACCGCGACCCGAAGAAGGGACCATCCCCGCGGGTGCGGGGAGCAGCCGTACAACCTCGTCGTCAAGGCGGGCTGGACGGGGCCATCCCCGCGGGTGCGGGGAGCAGCTCGCGGTGGGGTCGGTGTGGGCGCTGTTCCTGGGGCCATCCCCGCGGGTGCGGGGAGCAACTGCGCGTCCTGCAGGAAGCGGTGGCCGTGCAGGGGCCGTCCCCGTGGGTGCGGGGAGCAGAAAGCCTCAATCAGTTGCTTGTCGGAGTTGATGGGGCCATCCCCGCGGGTGCGGGGAGCAGATCATCGGCGCCGCCTGCGTCGGCCCTGGCGGGGGAC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 45670-46614 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVU01000052.1 Streptomyces minutiscleroticus strain JCM 4790 sequence052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45670 29 100.0 32 ............................. AGCGGCGGTCCGGGAGTTGGCCGAGGAAACGG 45731 29 100.0 32 ............................. ATCCTCACCATTGTGGCCCTGCACGGCAGCAG 45792 29 100.0 32 ............................. TGATGAGGAGTCCCTGTGATCGACAGCATGAC 45853 29 100.0 32 ............................. CTTCGGCGGCGCGTACGTGAGCGTAGGTGTGG 45914 29 100.0 32 ............................. AGGGTCGCCGCCGAGGCTCGAATCGTCCTCGT 45975 29 100.0 32 ............................. GCCCGGCTGCGCGCGGAGAACGACCGGCTGCG 46036 29 100.0 32 ............................. GGCCGCCGACCCGGCCGCCCCGGCACGCACCT 46097 29 100.0 32 ............................. ACCCCCGGCTTCGGCCCGTGGTGGCTGGACGG 46158 29 100.0 32 ............................. CGGCTCGGCCTCTTCGGCGCCGCAGCCATCAC 46219 29 100.0 32 ............................. ACCCCCACCAGCGCCACCGTGAATTTCCCGGC 46280 29 100.0 32 ............................. GCCGCCGGGCAGGTCATGAAGACCGGACTGGC 46341 29 96.6 32 ..........................A.. CATCCCAATCTTCTCGGAGCCGTTCAAGTTGG 46402 29 96.6 32 .............T............... GTACGACTCGGGCTTGGCTAAGGCGGCGAGTC 46463 29 100.0 32 ............................. TGGTGCCCGATACCGCGCGAGCATCCCAGCAT 46524 29 96.6 32 ............T................ TGCCCGCGCGATAGAGCGCGTTGATCATTTCT 46585 29 89.7 0 .......................CC...G | A [46608] ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.7 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GACCGGGGCACTCGGCCGGAGCAGGGTGTGCCGGTCGACAAGCGGCCGGGGTGTCGGTGTTTCTGGGGGAGCGGGCAGCGCACGGTCCTCGTTCTCGCTCTCGTCGACCAGCTCGGCGTCGACCACTTCCACGGCGCTGGAGTCGGCCACTCACCCCTCCGTCAGATTAGCCTCGTATAAGGGTAGACACACCAGCAGGACCTCCGTCGGTTCGCGTACAGCGTCTGGAAGCAGGCAGCAAGGGCAAGACTTTGGCTTGCTCCCCGTACCCGTGAGGATGACCCGGCCCGTGGACAGCCGACCTCGCACCGGGCCCCGCCCACTACCTATGATCAACACCCTCAGCGGCCATACCTCTTGGAAAACCCATAGAGTTGAACGCTCAGACAAACCGGCTTCCGACACGAACAAAAGGAAATAGCAAAATATACCAATTGCCGGAATCTGCGAAAGTCAGCAAAACCTCGTGCCCGCTGCAGTAAACCCGCAGGTCACGCAGT # Right flank : GCTCAGGGCACCTAATCCGGAGCGGCCAGCCGTGTTCCGAGTAGTGCCTGGTCAGGACGATGTTCTCAGGTGGGTGGCCGCGGTGTGGTGTCGCGCGGCATACTCGTTGCATGGCTGGCATCGAGATCGACGACATCACCGCGGACGCGCTGCAGGCTCTGGCCGACGCGGCGGGGCTGCCACTGGACGCCTACCTCGCGCAGGTGGCCGAGGAGAAGCGGCGCGAGCGTGCGCTGGCCGACGGCGCGGAGATCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //