Array 1 113873-114449 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJL01000038.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039518 scaffold_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113873 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 113934 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 113995 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 114056 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 114117 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 114178 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 114239 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 114300 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 114361 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 114422 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 130586-132386 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJL01000038.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039518 scaffold_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 130586 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 130647 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 130708 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 130769 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 130830 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 130891 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 130952 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 131014 29 100.0 32 ............................. CCCGATATACAGAATTATCGGGCATCCATGAG 131075 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 131136 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 131197 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 131258 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 131319 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 131380 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 131441 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 131502 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 131563 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 131624 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 131685 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 131746 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 131807 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 131868 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 131929 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 131990 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 132051 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 132112 29 100.0 32 ............................. CTCCAGCAGTTGGGCATCAACAGGAGAAACGG 132173 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 132234 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 132295 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 132357 29 86.2 0 TAA.........T................ | A [132381] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //