Array 1 99326-100013 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASIQ010000010.1 Enterococcus raffinosus strain K36 scaf_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 99326 30 100.0 35 .............................. TCGGAAAGATCGACCAATCATGCAGACAACGATCG 99391 30 100.0 34 .............................. GTCTTCGTGCTGCTGAACCTGTGCTTCTAACTCC 99455 30 100.0 36 .............................. CAAGCCAATTCCGACATTGTTTCTGTTGCAAAAAGC 99521 30 100.0 38 .............................. GCATTTGATTATGCAAAGGTAAATCGCTTATTGCAAAT 99589 30 100.0 34 .............................. TTTGATAGTTTAGGTTATTTATTAGAAACAAATA 99653 30 100.0 36 .............................. ATTGCTCGCCCAGATGTTAAAAAGGCATTTGGACTT 99719 30 100.0 37 .............................. GCGATTACAGAAGTTGTCGATACTGACAATGAAGAAA 99786 30 100.0 36 .............................. CCTTGCAAGTAACAACTGAAAAACTAAAAGGAGCTG 99852 30 100.0 37 .............................. CCCACATGGTCGCTAAAAATACAAACAATATCCCCCG 99919 30 96.7 36 .......C...................... GAGCGCCGAAGACGAGTACCAACTTGATCCGCCATT 99985 29 90.0 0 .....................-..A...T. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 98.8 36 GTTCAAATCTAAAAATAGTGGAATGTAAAT # Left flank : TATGAACCTTTCAAAATTTGGTGGTGAAAATAATGTATGTCATTTTAGTTTATGATATTTCTTTAGAAGAAAAAGGCGCTCGTGTTTTGAACCGAGTATTTAAAATTTGTAAAAAATACCTAAGTCATGTGCAAAAATCCGTGTTTGAAGGGGAGATCACTCCTGCAAAGCTGAAAAAATTAGAACAAGAACTAAAAGAGTACGTTCGCGAAGACTTGGATTCAGTTTTAATCTTCAAAAATTCAAATAAGAAGTGGTTAAAAAAGGAATACATCGGAATTGACGGATCAGAACTAGTTTCGAATTTCTTTTAAGTTTTAAATCTGTCGATAGAGAATACCTTAAAAAACCGGTAGTTACGACAGACGATAGAGAATGTTGTGAATATAAGGTTCTTTTTGTTATCCAGTGTTATTTAATTTTAAAAAGGAAGTCATTTCTATGAGGTCGACAGAAATGAGTGAAAGAAGCCCTCTATTTCAATGTATAATAGTTGTGGG # Right flank : TTTGGGTAACTAGAAAAATTCCAACTGCGAGTTAGATATCTAAAATAAGAAATTAATTTAAGAGGTAATTGAATATAAAAAAGCATAGTACATTATTGAATTTAAGAGGGTGAGAAGAGATGAAAATCTATACGATTCAACGGAGAGATTTTCTGACATATACTGATTCACAAGGATTTATAATTCCTAAAAGAGATCCAGAATACTCTATCTTTACGGATGACGAAGAAGGGGAAAATTGTCTGTGAGCATTAGAATGGATGAAAAGGCAATTTATAAAACGGATGGACATACCTTTAGATCGTGATTTAATCTGGGTTTGGCCGGATATCTATGCGTATCTTTCAGAAAAAAATGACATTGATTTTTCGAGACATGCTCTTTTCACCTTTGAAGTCCCTGCAGCTTACTACAAAAAAATGATTTTATGGTCCAATTTTATTAGTTGGCATGAGGTCTTGAACCGGTTATGGGAAGGAGTCGCAGATGAGGACGAACGA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATCTAAAAATAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 101694-102365 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASIQ010000010.1 Enterococcus raffinosus strain K36 scaf_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 101694 29 96.6 36 ....G........................ CACAGGATTGGTCTTGATGCTTGTTTTGAAACAAAA 101759 29 96.6 35 ....G........................ AATTCTCCATCGATTCGAATATAGCGGGGTTCTCT 101823 29 100.0 36 ............................. GTTGATGTTCCAAATGAGGCATATCATGGAAGCGAT 101888 29 100.0 36 ............................. GCTGCTAGGTCCAACCCTACTTACTCAGCTGTAATT 101953 29 100.0 36 ............................. ACAAAGAGCGGTCTTGATTATTTCCCTCTTGATGTT 102018 29 100.0 35 ............................. ATTTCAAAAACTATAAAAGTGAATGATAGAAACTA 102082 29 96.6 36 ...A......................... ACAGCAGTAGAAGAGAAACTCATTGATATCAAGTTC 102147 29 96.6 35 ...A......................... CAAGTAATTGTTCCAAGGATCGGAATTTTAACAAG 102211 29 96.6 34 ....G........................ GTCATTGCCGTAGAGAAAGTATTTCCTGGGGCTT 102274 28 93.1 36 ....-...T.................... TTCCCTGACGCTTCAACACCTACGCCTAGCCCAGGC 102338 28 79.3 0 ..............C.A.-.....G..CG | ========== ====== ====== ====== ============================= ==================================== ================== 11 29 95.9 36 ATCTAAATCTAAAATAGTGGAATGTAAAT # Left flank : AAAGGCAAATCTTGCTGCTTTTCACTTAACAAACTATATTCTTCTCGAAGTTGAGCAAGTAGATATAGATGATTTAGAAGGAGAGTTGTATGAAGTGTCTGCAGAATGTCGCTACGTTTGGGAAGCGATCCTTGAGAAAGCGACCATACAAGAAAAAGAGACAATGTTTACTTGGTTTAAAAATCAGCTTAAACATTCTAACTATGGGTTAAGTTATAGTGAAATTGAACAAATTTGTGAGGAATATTTTTAAGGGATAGAGTTTATGAGAGGGTAGGAGTGGATTCTGCTGATAAATCAAATATTCATCAAGAATTTCTAGTAAAAAGCTTAGTACAAGTGAACCAATCACAATTAAATTGACGCTATTTTTTTTGGGGGATCTGTCGACCTCAAAAAATCAGAAATTTCTGTAGTTGCGACTGCAGCATGAAAATGTTGAATTCTAAGGATTTTCTGTTAAGAATACTGTTATTTTTGTTGAGTGATGATGTAATAAA # Right flank : GCAAATTATGTTATCACACAACCAATTCACCCAGAAAATTTCTCCAATTCCAAAGCACTAACCTCATAAAAAATCTACAGCCACCATCGCAAAAACACTTTTACCAGCTGGAGAGTGTTTTTTTGTCTCTTTATTTATTCCTAAACTCTGAAACTTTCATCCGAAACGTGGGTGATCTTTGCTAAAATTAAGAATAAAACCATTATTTTTATAAGGAGAAGACCGATGCAGGAGAAAATAAAGGTATTGATCATTGATGATGATCAAGAGCTGTGCTCGATTATTGAACGGTATTTGACGCGTGCTGAGTATGAGGCGGCGTTTGCTCATACGGGTGCGGGCGGATTGAAAATGGCCTTAACAGGGGAGTATCACTTGATCGTATTGGATATTATGCTGCCGCAAATTGACGGGTTGAGCATTCTAACAGAGATTCGCAAGGAGAGTGTGGTGCCGGTCTTGATGTTGACAGCAAAGAACGAGGAGGCGGATAAGATTCG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTAAATCTAAAATAGTGGAATGTAAAT # Alternate repeat : ATCTGAATCTAAAATAGTGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //