Array 1 9286-8537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIJI010000030.1 Pseudomonas cichorii strain Pcic4 YA0002_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9285 28 100.0 32 ............................ CAGCAGCGTGCCCGATGACAGCACCCACTCAT 9225 28 100.0 32 ............................ GTCATACTCCATTGCTTCGGTATCTGGCTTCC 9165 28 100.0 32 ............................ AGCTCGAAGTTCAGCGACTCACTGGTCTTTGA 9105 28 100.0 32 ............................ TACTGGCATCCGACATCAACCAGCATTGGGAC 9045 28 100.0 32 ............................ GCTCCGTGCGGCCGTTCTCTGGCGTGAAGGTC 8985 28 96.4 32 ........T................... AACAGCCAGGCACTCCACCAGCTCGCAAGTTT 8925 28 100.0 32 ............................ ATAAAAACGGCCTGCCCTACGTAGAGCTCACC 8865 28 100.0 33 ............................ ATGGACATCTTCAACGTAGTGACCGTGAATGAA 8804 28 100.0 32 ............................ AAAGCAATAACAGTGTCCTGAGCGGCCTGATT 8744 28 100.0 32 ............................ AGACGCACATTGTCGCATCAGGCTGGATAGCG 8684 28 100.0 32 ............................ TTATAGACAAATAGCTGAGGCGCGGGCGACAC 8624 28 100.0 32 ............................ TGTCAGTGGCTGCCGGTGGAACTATCGGCTTC 8564 28 96.4 0 ............C............... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.4 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CTGCAAAAAACCTTGTTGACCAATGATATGCGCATCCCTATACTTCGCCGCCATTGAGCCCTGATGGCGGAATTGGTAGACGCGGCGGATTCAAAATCCGTTTTCGAAAGGAGTGGGAGTTCGAGTCTCCCTCGGGGCACCAAATAGCAAGACACCCAAGCAGTTGCAGAACTTGGGTTTAAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCCTGGGTTTTGGTGATTGCAGGGCCTGTAGGAGCGAATTCATTCGCGAGGCGGTGTTCCAGACAATACATATCCTTTGAATGTACCGGCCTATCGCGACTGAAGTCGCTCCCACAGGCCCGGCGCCAAACCACGACTTAACGGACCCTATTTTCGACCCTCTTTTTTCAGACTCCGTCGCCCCTTTGAAAATCAATAACTTACGAGATCCACAAAAAAGAGGGTAAAACAGCTTCAGGCAGGTGGTTTCTCTTTAAAAACGGAGAGTTATTAGGCAAGGTGTCTA # Right flank : ATCCTCGAAGTGCAGGAAGAATGCGTCGTCGGCTTCACTGCCGCACAGGCAGCCCAACCCTCATGCCCGTCAAATCCTACACCACACTTACACACGCCTCACAACCACCTACTCCCCATCCCCTCACCCAAACTGAATCCCCTCATTTTACCAACCCAGCCCCCAAGCTACCCTTCCCGTCATTCGCTGCCCCAGCAGCGACCGGGTTTGGCGACCCGGTTTAAAGATAAATTTCCCCCATCGCGAAGCAGTCGATTTATTCTTCTGCGCACTGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGTCTGCCGGGTTTATCTTTTTACCGGTTCGCCAACCCTCACACAGCTGCCTCCATTTGTTTGGCGACAATCCGTGGCAGCTCTTTTTCAGCGACCATAAAAAGTGTGCCTCTATGCAAAAGCTTCTATCCGATTCCCCGTGTACATCCTCCTTCCAAGCCACCCTCTTCCTGCGCCACAGCCGCATGCTGCGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 88635-89622 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIJI010000054.1 Pseudomonas cichorii strain Pcic4 YA0002_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 88635 28 100.0 32 ............................ ACCTCCGGCTGGGCTGAACTGCCGAGGATTTC 88695 28 100.0 32 ............................ TTGAGATATTCCGCCCCATGGATCCTGACTAC 88755 28 100.0 32 ............................ GCGTCGATCGCTATCGGCAAACTTCTTGATGT 88815 28 100.0 32 ............................ GCGAAATGATGGCTGATACACGTGATGTGGAG 88875 28 100.0 32 ............................ GACTACAGCCATGATGCGCCGCGCCACTTCGC 88935 28 100.0 32 ............................ ATCGATGCCATCCACCTGCTGGGTGAATACCC 88995 28 100.0 32 ............................ TGAAAGATGAACTGCGCCAGCCAGGCATGGAG 89055 28 100.0 32 ............................ ACAAGGCCCGTGCCAGCACCGGCAATCATGCC 89115 28 100.0 32 ............................ AGTTGAAGCCCTCGACCTCCAACTTGACGGCG 89175 28 100.0 32 ............................ TTTTTCATGCGCGGCGGCCAGGTGCATGTTGG 89235 28 100.0 32 ............................ ATACCGACCGGATAATGTACATGAGCCTCGGA 89295 28 100.0 32 ............................ CGACAAACTCCGCTCGTTCCACATCGACAATG 89355 28 100.0 32 ............................ AGGAATCCCGGCCCGCCAAGCGGACACCCGGA 89415 28 100.0 32 ............................ ACATAGAGCAAGCCGCTGATGGCCTCGCTGAT 89475 28 92.9 32 ...C........A............... ATGGCAACCAGTGGTTATGCGCTCGCAGCAAC 89535 28 82.1 31 ...C.T......A......A..C..... CTACGGGCGCTAAGACCCGGATAAATCGCAT 89594 28 71.4 0 C.TC.......CAC.......CC..... | C [89619] ========== ====== ====== ====== ============================ ================================ ================== 17 28 96.8 32 GTGAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GCAAAACAGGCGCTGTAGAACCCGAAGGCATAAGGGTCTTTCATTATTGTTCTTGTCCCCATCAGTCAAGGTGGCCAGAGCATCAACCGCTTAAATGATGGGTTTCAGGGTAGTAGAGAGTGAGGGTGTTTGCTGCTGATAGATCCGGCTGATTGGGTGGGATTATCCGCGAGACGTCATTTCAGACGATGCATTTTTGAGGGCTGAGTGATTCATCCCAGGCGCACACACACACACACACAATCTTGTGGGAGGGGCCTTGGCCGCGACAGCCTTCAGACAAAATATGTCAGGGAATGGAGCTTTTCCAGGCTGTCGTGGCTACTGGTGCGCATCTGTATAAGGCAGCCAGGAATGAACCCTTTCGTGACCCTATTTTTTTCGCCTCAGGTTCGCTCTTTAAAAATCAATGACTTATAAAACTCGATAAAAAAAGGGGTAAAACGGCTGCTGGTGCATATTTTTCTTTGAGAACGGAGGGTTATCGAGGAGAGTGTCTA # Right flank : AGATCACCTAAGCGGTGAGCAAAACACTGAGCCTTCACTGTCGTATAAGCGGCCTTAAAAACCAAAGCCCTTGTAGTTAACTGATCTACAAGGGCTTCAATCCATTGCCAAAAGAACATCAAAACCAGGGAACTGTAGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCGTCCTGGGCGCTGCTCTGTATCGGCCCATGCTGAATGAACAGCAGGAATGTCTGGCCGTTGGTGCGACTGCGCAGTTGGGTGAAGGGCAAGTTGCAGCGTTTTGCGGCGCTGTCGGGGATGCGTTCGCGGGCTTGTTCCTCCGTGATTCTGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACCTGCACTCGGCTGACGCGCCGATGCTGTGCGTCAGTGGGTATCGGGCTCAGTTCGCCTACTCGCACATGGTCGCGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGTGCTTGCGCACTGCCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 100359-98648 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIJI010000054.1 Pseudomonas cichorii strain Pcic4 YA0002_54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 100358 28 100.0 32 ............................ AGCACGCAGCGCTCAGCCCATTACGCATTCTT 100298 28 100.0 32 ............................ AGGACCCCGGTCTGCGCATCGCTAAGCCCCAG 100238 28 100.0 32 ............................ AGAAACACGAAACCGCTCAAGCGAACACCAGG 100178 28 100.0 33 ............................ GCTGAAACTCACGCCATCGACGAACAAGTTCAT 100117 28 100.0 32 ............................ AACGCAAAGAACGATTGGTTGCAACGCGTGAT 100057 28 100.0 32 ............................ ACGATGAGTCGAGCGTGCGTTGTTCATAGCGC 99997 28 100.0 33 ............................ AGACAGGACAGCATTCATCAGCGTGGACTGAAT 99936 28 100.0 32 ............................ ATGATCCGCGGTGCCGCCGACAGCCTGCCACC 99876 28 100.0 32 ............................ AAGACCTTTGCGCGAAAAGTGGTTAACGGACC 99816 28 100.0 32 ............................ ATTCAGCGTCAGGTCTTCATCGCTATCGCTGA 99756 28 100.0 32 ............................ ACCCAGCTGAAAGGCCTGCCACCGCTGCCACG 99696 28 100.0 32 ............................ AACAATTCCTGGCGGTATTGGCGAGGTTTGCC 99636 28 100.0 32 ............................ GAGTACACCGCTGATGGTCACAACGACTTCTC 99576 28 100.0 33 ............................ GGGGCCACCGACGAAGTTCACCAGCTCCTGCAT 99515 28 100.0 32 ............................ ACCGGCAATGCGTGAAGTGCAACCGCAATCTT 99455 28 100.0 31 ............................ GATGCAGCAGCGCATACAGACAGCAGTCGTA 99396 28 100.0 32 ............................ ACCACATCGTTGATTTCACGTTTCAGTACAAC 99336 28 100.0 32 ............................ TCAAGTTGCTCAAGGCGCTTGTGAATACCGGA 99276 28 100.0 32 ............................ TTCGGTACCACGCCGAGCATTGGCGGCAAAGG 99216 28 100.0 32 ............................ TACCAGCTCAATACGCCTCGGCCTTTTCAGGA 99156 28 100.0 32 ............................ TCGTTGCCATGCTGTCGCTCGGCCTTTGGTTG 99096 28 100.0 32 ............................ AAACAGGCTTGATCGTTACTCAGGTCGGACTG 99036 28 100.0 32 ............................ TGATGGATGGGGTAGAGATACCCAAGGGTAAG 98976 28 100.0 32 ............................ GATGAACCCAGCAATTGCGCCGCAGGGCATCG 98916 28 100.0 32 ............................ TGTTATCAATGCGCTGGCGCAGATTGTGGGTG 98856 28 100.0 32 ............................ GCCGATCACCAAGCCAAGCGATAGATTGTTCG 98796 28 92.9 32 ............A...A........... ATTTTGTAGGCGTTGTTGGCTGAGTACTGCGA 98736 28 96.4 32 .............C.............. CCGTCCGCAGACAATTCATCCAATCATTCATT 98676 28 85.7 0 ...........AAC..........T... | C [98650] ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.1 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TCCCCTCGAAATGCGCATGCAGCGTCTCGATACCGGTATCGCGGTCCTGAGCAAGATTGATCCAGTTGCTCTGAGTCATGGCAGGCTTATGGGCAAACAAGGGGATAGAGAAGCGTGTTATCGCGCATGGGGGATGGGAAGTCTAGAAGGTTTGTGCAGGGTGCCTTTAAAGCCTTTCGCGAATGAAGTGGCTTGTGTGGGAGCGACTTCAGTCGCTAAAGCAGTGCTTCAAGCGATATATCTCTATCGGATGTACTCCAGTGGGAGGGGGCTTGCCCGCGACAATGCAGGGACGATATCTACCGATGCGTGCCCGTATCTACAGCGAGCAATAGACGCACAAAAACATTTTCCGGAATGCTGACTCTGACCCTCTTTTTTTCATCCAACATACGTCCCTTTAAAATCAACAAGTTACATATCTGATGAAAAAAAGGGGTAAATAGGCTACTGGCGCATATTTTTCTTTGAAAACGGAAGGTTATCGAGGAAAGTGTCTA # Right flank : CAATCAAATCCCCCAAATAACCCCATAACCAACTGATCTACATAAATTTAAATCCAAACCTCACAGAAGCACGCCTGCCACAACAACCATTCTGTAATCCCCTCCTTACAAGAACCGCAGACTCATCTTTCTGACTCACGACCACCCCCAACCTCAAAAAACCTAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCTCTCACCGGCCAAGCGCCATCACGGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCAAAACGCGCGAATATTTATTATCTGCAGCATTGCCGGGTATTGGTGAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACTGTGCTGCTGGGCACGGGCACTTCGGTGACTCAGGCGGCGATGCGTGAGTTGGCCAAGGCGGGTGTGCTGGTGGGCTTTTGCGGCGGTGGCGGTACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //