Array 1 94562-94308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRM010000022.1 Leptolyngbya sp. FACHB-239 contig22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 94561 38 97.4 35 A..................................... TCGAGAATGAGTTGGGGAAACCCCACCAATGCTCG 94488 38 100.0 33 ...................................... TTGGGATGATCAGCAGCTCAATCAGTACGCCGA 94417 38 100.0 34 ...................................... AAAAGATGATGCTTGTTGTGCCAGCTGATCGGAT 94345 38 92.1 0 .A....A.................G............. | ========== ====== ====== ====== ====================================== =================================== ================== 4 38 97.4 34 TGTTGCGATCAGCCTCCCACGAATAGGTGGGCTGAAAG # Left flank : CTGAACTGTGAAAAATGAGGGTCAGTTTGGTCGTTGTGAGACGACTGTGCTTTCCGACCCTGGTAGCTGCCCGCTCGCTGACTGCCATCCTGGTACAGGTTTCGATTTGAGATTTGTGTGGGGATGGGAAGCTGTAGTTGTGGAGCCCGTTCTTCAACTATAGCGCAGGTGCGCGCCCAGCAGAAGTGAGTCAAGCCTCCACCTCGTGAAGGCACAGGGGCATTATCTCATCAATTACTTGGTGCTGATAGTGTGACTGAAGTTGCAGCTACTGAATCGCCTCCGAGCAAGGAGGAGTCCTCCAATTCTTTTTGGCAAACCGCAGCGAGGGCAAAATCCCCGGGAGGTTCGCCAAACCGCTAGGAGCCACTACTAGTGAACCTTTCATCCAGTTGAGGTATGTCGAAGTAAGTTTTCCAGAAAGTTGAAAGAGTACTTTTTAGCGAGGTTTGCCAAAAGGCAGCTTGGAAAGCTTACAGGAGAAGAATTCTAGCGCTGGG # Right flank : CTCAGAGCAGAAAGTATAAATACTATGAGCTCAATGTGATTGTTGAAACATCAAATTCAATTAGCCTCAGCAAGAGGTAGCAAGTTGAATTTATAAACTACTTAACTACTAGCAACTTAATAAATCCAAACCAAAAGAGCTAACACACTAATATTTTCTATTGGAGGACTGAAAGGTGCATTCGATTCGTAATTGGTCAGCATTCTTTCTTGATTTCAAGTGACATAAATCTGCAAGTCGCATTATTGAAACAAATAGCGACATTAATCTGCGAAGAGCAGGGATTTACTAATTTGCGACACTAATTTGCGAAATGATATCCATATTGCCAAAAATCATCAAAAACGACATTAATTTGCGAATTGCGACATTTAATGTGCGAACGTACATAAAAAGCCGATGATGGGATTTGAACCCATGACCTTTCGATTACGAATCGAATGCACTACCACTGTGCTACATCGGCAAAAGGCCTCATGCAGTATAACAGATAATCGTTC # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGCGATCAGCCTCCCACGAATAGGTGGGCTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 163128-163685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRM010000006.1 Leptolyngbya sp. FACHB-239 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 163128 37 100.0 36 ..................................... ATTCGGAAACTCCCTGCACAACTCGGCAAATGCCCG 163201 37 100.0 37 ..................................... TCCCCTTAACTAGGCATGATATGCGATCGCTGCTTAG 163275 37 100.0 36 ..................................... GCTAGGAATTTATCTGAAAGATATCCCTCGACTGCG 163348 37 100.0 43 ..................................... GAGAAGCCAAACAGACTTAAGCCTGCACAAGCAATTCACTCAA 163428 37 100.0 37 ..................................... AAAGTATGAGAAAGTTTCTGACGCAATATCAGAGAAC 163502 37 100.0 36 ..................................... CTCAGTCGAAAGTATTGCTGAGGCGTTGGGGATAAA 163575 37 100.0 36 ..................................... GGCAAGGTTATTGCCGTCAACGAGCAGTATCAACAT 163648 37 100.0 0 ..................................... | G [163683] ========== ====== ====== ====== ===================================== =========================================== ================== 8 37 100.0 37 GTTTCATCCAGGTTTGCGGCAAGGGGGCGATTGAAAG # Left flank : CCTCTTTCAGGCACTCCTCAAGAGAAAGCAAGAAATTTAGCGATCGCAGCATACCAATCTCGAAAATAGAAATTACTTGCAATTAGTTCAAATGTATTTTATAAATAGAGTGCGCCGTGGTTCATGCTAGCAATAGCCCCTGTGCCATCGACAATTACGAGCTAGTTTGACTGTCGGAAGATAGTCTTGCTTTCTGGCTCAGGTTGACTGTCTACCTCGAAGTTGGGTGCGCTCCCAGCAAAAGGGTGCGGGTCTACCGCAATGCTGGTTAGCCAATCTCACCTCCGAGCAAGGAGGAATCCACCCCTAACTTTTAACTTGTTGGCAAACCGAAGCGAGGTCAAAATCCCTAGGAGGTTTGCCAATCCGTACAAACTAATCCCTTCAGCAGCTTTCCACAGCATAAAGCTGCTTCTTGTCCAACAAAAAGTATCGGATTTAGAGGGGTTTGCCAAAACCATGTTTGAAAAGCACACTATGGCTGCACCTTGAATGGCAGG # Right flank : GTAACTTAGTCTTTTGACAACTTTAATAGGCACAATCTTTCGGTTAACAGTGGGTGGATTGAAAGGACTGCCTGACTCGGGGTTTTAATTTAGAAATATTTGCCCCTCGCTATAACGAGCAGAGTTAGCATTCGTTTTAACTGGGTAGAGTCTGTACTGTAAAATGTTGAAGTGGATAAGAATTTGAATGAGCATTCAACTGCTTGAAGCTCTGATGACAAGAATTTGTTAACGAATGATTTCTTACCCCTCGACGACAAGAAGCTGTTAAAACGACACTAAATTGTTAACGACGACATCAATCCGTTAACGACGACAAATAAAGTGTTATTCGACAACAATCACACGAATTTAAACAAAAAATTGCCTGACTCTTAAAAGCCCCCAGAGTCAGGCAGTCTACCTGTAAGGCACGCCTTTAACCGGATACACCAAACAAACTTAGTTGCCCCCTAGTTGCTTAGCTTTTCCGAGTGCGTTCCTCAGATTTGAATCTATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCCAGGTTTGCGGCAAGGGGGCGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 1 31215-34655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRM010000040.1 Leptolyngbya sp. FACHB-239 contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================================================================================================================================== ================== 31215 36 100.0 37 .................................... TCGAGAACGTAACGAGAAGCAACGGACATAGAGCCAG 31288 36 100.0 38 .................................... CTACGATCCGGCTGACTACTAACCCCAACGCGCAGCAA 31362 36 100.0 41 .................................... TTCTCAGTTTACGATTGTGGCGTGATTGTGGCGTGATCGGG 31439 36 100.0 48 .................................... CTGAACCATTTGTAACTTACTCAGCTACTTTTTAATTCTTATTTTAAG 31523 36 100.0 37 .................................... CTCTTCCCTGTCTTCCGTTCCGCTGCAACGTCTCGAT 31596 36 100.0 44 .................................... TCACCAGAGAATGCCATCTGCATTAGTGCACCCCCCATATTCTA 31676 36 100.0 43 .................................... TGTAAAGCTCTTTCATAGCTTCAAATCCTTTACTGAAGGTCGG 31755 36 100.0 40 .................................... ATGAAGCGCTTAGTGCCTTTGCTTTGAAACTTCAAGAATG 31831 36 100.0 43 .................................... ATTTTACGCCCTTCAGAAAGAATCATTTTTGACTCAATAACTT 31910 36 100.0 43 .................................... CGCGGATGTTCCCCGTCTTTGAGGGCATTCCGGTGGTCATGGA 31989 36 100.0 42 .................................... GTTGGTTTGTAGCGATTTGGCAATTGATACATCGCTCTCGAT 32067 36 100.0 38 .................................... CTTGCCATAACTGACAGACAAGGTGTCAGGGGATTTGC 32141 36 100.0 40 .................................... GCTGTTTTTCTCGACCTGGAATTAGAAGCCTAGCTGGAAA 32217 36 100.0 40 .................................... CATCAACTGCGGTGTCAGATTCTAAACCATAACCATTGTT 32293 36 100.0 44 .................................... AGTTCTGTCTATGTTCGTGACCGTTGTTTCTAATCCGCTAGCAA 32373 36 100.0 52 .................................... TTGATGCATTCGTAGGTCGCAGTTCAGTAAGTGGTGATCACTTCGAGCGTGA 32461 36 100.0 40 .................................... TTGGGTAAAGGGAGCTGATCGGGCGTTTGAATCGACTGTA 32537 36 100.0 38 .................................... CCACCCACACGGGGGGACGGGCGCTCCACCTATATGTA 32611 36 100.0 45 .................................... GGAATGGATCAAAGTTGCCATTTGCATCCAAATAGATAGGATCAA 32692 36 100.0 42 .................................... ACGGTTAGCGTTCTGCTTACCAAAGATTTTCCAAATAGGCAT 32770 36 100.0 48 .................................... TTCAAACTGCTCGTCAAATACCTCATCCCCTGCATGTCCCATCTCTAG 32854 36 100.0 36 .................................... TCATTAATCAGCGAAAGACTTCTTACTTGCGGCGGT 32926 36 100.0 36 .................................... TCACTTGCAGCCGCTTTGATTTCGGCTAATTCCTGG 32998 36 100.0 37 .................................... TGAAGTTCAAAGCGAGTCCAACTTGTTCGAGTGTTTT 33071 36 100.0 36 .................................... ACAGTTCAGGCAACGAAGCTTGCGGCGAATTGCGAC 33143 36 100.0 34 .................................... ATCACAAGCTTGTATCCAATAGAAGGTGTACCCG 33213 36 100.0 45 .................................... TTTATGGGTTTTTATCGAATAGATTGGGTGATAAAGGCTTATCTG 33294 36 100.0 37 .................................... CAAATTTGTATCAGCAGCAATACTAATTAGTCTTTCA 33367 36 100.0 40 .................................... GCCAGCACAGCACACATGTCTTAGCCTCAAACGTGGGGAG 33443 36 100.0 35 .................................... TCCAAGAACAGAACGCAAAATCTAATTGTTTTAGT 33514 36 100.0 42 .................................... ATGAAAGATGTGCAGATTATGAGTGCCAAGATTGCATCACAA 33592 36 100.0 39 .................................... CCGCGCAAATTGCTCACTGGACACAAACGCAGAGCGAAT 33667 36 100.0 39 .................................... TACTTGTATTGCTCGAAGTTGATCTTCGGTGCCGTGAGT 33742 36 100.0 42 .................................... TAGATCTGAATCTAAGATCAAGAATCTGAATTAAGATCTGAG 33820 36 100.0 36 .................................... CTAAGAAGGTAGTAGTCAAACGCTCCACCATACGAG 33892 36 100.0 48 .................................... TCTAGAAGTACATTATTGTTAATTACTGGCATTTAATATCTACCTCCA 33976 36 100.0 40 .................................... TGAAATATTAAATAATGGATGCTCTGAAAGTAAAGCTACA 34052 36 100.0 39 .................................... CACGATCATTGCTATTACCAGAGCCAATAAAATTGATGC 34127 36 100.0 35 .................................... CTGTATCTTTTCTAGCTTGATCTAATTTCTTTGAT 34198 36 100.0 39 .................................... TAGATAAACAGGATTGTGTCTGCATCCTGTTCAATGTTG 34273 36 100.0 41 .................................... GAATCGAATTGATGTAATTCTGCCTTTCGATGGTCATAAGA 34350 36 100.0 234 .................................... TGAGCATTGAGAATTACTCTATAGATCAAATGAATGGTAGCGATACTGATTCTCAAAAACGTCTGAGCCAGCATTTTCATCTACCAGCCCATTCTCTAATCAAGCCCTTACAAGGCGTCCTTTCAGTCACAATCAGCCAAACCAGATCTAAGTAACATTGATGTAACAAATTTATCCAGTTTCCCGCATTGCCACTACAATACCTTTGGCGAAAGCGCAGTTAGAACGATCAGG 34620 36 69.4 0 ......C.C....C.AA..CC.C.....C.A...C. | ========== ====== ====== ====== ==================================== ========================================================================================================================================================================================================================================== ================== 43 36 99.3 45 GTCTCTTTTAATAGAGGCAATTAATTGAATGGAAAC # Left flank : CTTGTTTCATCAGTTGAAAGGTTTAGAAGGACAAGAAAAAGTATTTGAGAACTGGCAGTCACCGAATGAGCCAAAATGGAAACAAGATCCTGAAGGTCATTGGAAGCTGAGGGTGTTGAAGTGTTTAAACTTCATCTGTGGAGAAAACTTTAGCTCTCTTGAAGAAGCCAGTTTACTTGTGAAGGTGCATCAGAAAATAGAAAGGGCGATCTCTCAACTATAATGTTGTTCCGTTCTGATGAGTTCGATCGCTTAAATCGACAGATTTTTCAACTGCTCGATCGTTTAGTTTGATGGGGATAAGTTTTGAGATGGAGGGGGTGCGAGGCTGGGGCGATTTGGCTGAAAGGGTGATTGTTTCGTTGGGAGCCTCGATGCCTTATGGGATAAGGGTTTTGCCGCATTGTTTGGGGTTAAAGTTGATGAAATTATTTGTTTTTGGACTGAGCCTCGCAAACCGCTGCTGGACGTTAAGCGGGGATTGAGTTTCAATGGAAGGG # Right flank : CTGCGCCAGTTAGTTCGATCGCTGTACAACAATTTTTCCCACCCGCGATCGCATCACTCTATCTTTCGCAATTTGATCAGGGAGCACAGACAATGATCATCTACAGAAAAACCTCATGTATCTTTCAAATCGCGCCCTACAAGTTCGCAATGCCTCGATTGCCGGAATCAGCGGAGCCTTAACCTTAGTTATTCTGCTGATTGCTCCATTAGGATTAGCAGCCGTCATCATCAACACCCTGCTTGTCACGATCGCAACTTTTGCCACCGGAACTGTCGTCGATCGTGTCGTCATTTCAATGCAGCGCGATCGTAATTTACCTCCAACTGCTGACCTTCGCAGACGAGAAAGCAGCAATGTGGATCGATATCGGTAGTAGGACGCAGTCGTGAAAACGCTCTATGTTTCTCACCAGGGTTGCTATCTATCACTGCGACAAGAATCAGTCTTGATCAAACGAGGTGAAACGATTCTGGATCAAGTTCAGTTGCCACTGCTAG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTTTTAATAGAGGCAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 36507-38030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRM010000040.1 Leptolyngbya sp. FACHB-239 contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 36507 36 100.0 42 .................................... AAGAGTCGCTTCTTTAGTAAAGAAAGCATTAAGCTCAGCTTC 36585 36 100.0 38 .................................... GAGCATACTTTACCAGCCCATTGAATTCCTTCTACAGT 36659 36 100.0 41 .................................... AAGGTTTGGATTTGCATTATCGTGATAATGCTTATTAGCTT 36736 36 100.0 38 .................................... CATTTCTTCTAAAGTAGAAGGAACAGGTTCGAAGGGTT 36810 36 100.0 41 .................................... ATAAGATCACCCACAAAAGAAAGCTGATATTTATTACCTAA 36887 36 100.0 41 .................................... CCGGGATTAATCCCAGCCAAACAACTCCAATTTCACTGGCT 36964 36 100.0 40 .................................... GTCAGGGTTGATACCATACGCACCAAGATATTCTCTCCAC 37040 36 100.0 41 .................................... ATAATTTGGGGGGTAAGCTGCGCCAGCAGCAACATACGGTG 37117 36 100.0 49 .................................... TCACTTGTATTCCTGTTGAGAAATATAAGGAAGCTGCTCAAAATGTGAG 37202 36 100.0 41 .................................... ACACGATCGCCCCTCTTCTCTGTCAATCCCTCATAATACGC 37279 36 100.0 46 .................................... TTTCCACCTCTTTACGAGAGGAGCCAATCAAAGCTTCGATTTCTGA 37361 36 100.0 40 .................................... TTGCTGTATACATGGATCTCTAGCGTTTTTCTTGTGGTAC 37437 36 100.0 46 .................................... GCACAGACACTTACCTCCGGGGACAATCCCGTAGTGATCGCAGTGG 37519 36 100.0 43 .................................... TTTAACTGGTTACGCATGAGCGTAAGATGTTGGATGTCTTCCG 37598 36 100.0 39 .................................... CTTCAATCAACATCCGGGTGGCTTCTAATCGTTGCTCAA 37673 36 100.0 52 .................................... TTGAATAATTTGCTGAATAAACTGAGATTTTTGATGAGCTGTCCAATTGCAA 37761 36 100.0 41 .................................... CCCTACCCAAACAAGTCATCAAGTCCGCCAAGATTTCTGTT 37838 36 100.0 39 .................................... CATCGATCGTGCGTCGAATCGTCGGATGATTACGAAATT 37913 36 100.0 46 .................................... ACTCGACCATAATTCTTGAAGCAACTTTCCTAGCCTCTTGACTCAG 37995 36 94.4 0 ...............................A..G. | ========== ====== ====== ====== ==================================== ==================================================== ================== 20 36 99.7 42 GTCTCCATTGATGGGGGCAAACAATTGAATGGAAAC # Left flank : ATCTGATTCGGTGAAGTGGAAGCGGGATAGATGCTAATTTATGTAGTGACCTATGATATTCCGTCTGATAAGCGGCGGAAGAAGATAGCGGATTTGTTGGAAGGATATGGGCAGCGGGTGCAATATAGTGTGTTTGAATGTGCACTTTCGGCTGTGAAGTTCAAAGAGCTTCGGAAGCGATTGCAGCAGCGCATTAAGATCGAGGAGGATAGTGTGCGGATGTATCCGATTTCGCAGCAAATGTTGCAGCAGGTTGAGGTTTGGGGTGGAGTGGAAATCGTGGAACCGCCGGGATCAACGATCGTCTAGTGTCGTATTTGCTGCGAGGCTCAGGAGATTTGCTTGGAAGATTCATTATTTCGTTGGGAGCCTCGCAGCCTTTTGTAATAAGAGTTTCAGCGTTTTTTTAGGAAGTCAGAGAGCGCATTTTTTTTGTTTTTTGCTTGACCCTCGCAAACCGAGCCTAGACATCAAGCAGGGTATAGGTTTCAATAGGAGGG # Right flank : CTCTGCCTAATATCAACATTGATGCCGCGCTATAAATTCTATGAACCGTTTTGATTAGGAGTGACTTACTGGCAGCTAACAGGCACTTTTGTCATGTAATGTTTGAAGCTGTATTGTGTTCTAGCGCCTTTTCTAAGTAAGTGTCTTAACTATGTATCCTAACGATCGCTTAGTAAGAATGCTCTCGAGCATAAGACCATAGATTATTTCAAAAGTTGGGAGGGTCAGACAATCGCTGAAAGCTTGATTCTTTCGTTGACCCTCCCAAATAGCTTGCTAGGAGGAAGTTTCAGCCGTTTTTTGTTTGAATTATTGATATTGAATATCAATAATTGACAGATGAATCAGACCCCTGCGAAAATATAGGTCTGAGATGCTTTCACATAGAGCGTTTCAGACTCCGACCGTTCTCACTCGTTGGGAACCACAATTGAATGGAAACCTTCCAGTTGCGCCACGGTCGCGATTGCATCAAGTTCTCACTCGTTGGGAACCACAAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCATTGATGGGGGCAAACAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 38436-38834 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRM010000040.1 Leptolyngbya sp. FACHB-239 contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 38436 36 100.0 33 .................................... CTTCCAGTTGCGCCACGGTCGCGATTGCATCAA 38505 36 100.0 35 .................................... TCATTGCACCTTTAATAGGCAAGCCAAATGCACTT 38576 36 100.0 36 .................................... ATACGCCATTTTCCATTAGCAGGGTTATAGGTTCGA 38648 36 100.0 37 .................................... GATGTTGATTCCTTCTCCCGAATTAGGGTCGGTAATG 38721 36 100.0 42 .................................... CGCAGTGCCCTCAATGATATCCATCAGTGGATCCGCGATATC 38799 36 94.4 0 ............................G......A | ========== ====== ====== ====== ==================================== ========================================== ================== 6 36 99.1 37 GTTCTCACTCGTTGGGAACCACAATTGAATGGAAAC # Left flank : ATTGAATGGAAACACTCGACCATAATTCTTGAAGCAACTTTCCTAGCCTCTTGACTCAGGTCTCCATTGATGGGGGCAAACAATTGAATGAAAGCTCTGCCTAATATCAACATTGATGCCGCGCTATAAATTCTATGAACCGTTTTGATTAGGAGTGACTTACTGGCAGCTAACAGGCACTTTTGTCATGTAATGTTTGAAGCTGTATTGTGTTCTAGCGCCTTTTCTAAGTAAGTGTCTTAACTATGTATCCTAACGATCGCTTAGTAAGAATGCTCTCGAGCATAAGACCATAGATTATTTCAAAAGTTGGGAGGGTCAGACAATCGCTGAAAGCTTGATTCTTTCGTTGACCCTCCCAAATAGCTTGCTAGGAGGAAGTTTCAGCCGTTTTTTGTTTGAATTATTGATATTGAATATCAATAATTGACAGATGAATCAGACCCCTGCGAAAATATAGGTCTGAGATGCTTTCACATAGAGCGTTTCAGACTCCGACC # Right flank : AAACCGGACAGCTTAGTTCGATCTCATTCCTGAATACTGTTGCATCATCAAGTCAGCCAGGAGCCAACCTCCCTCAACCTGCAATGTTTGATGCACCCCTTCCATCACTGTTGCAGCAACAACTAAACCGCTTGCTTTCGTCCAATCAAACCGACGGCTGAAGCCATCAGGGATCACAGAAGACGATCGTGGTGCAACTGATAAATTCCAACCCTCTACGATTGCTCGATAAAGGTAGCCAACTAGATTCTGAATCGTGCGCGGCTTTTGCTAATCTTTTAAATAAACGATCGCAGGTTCAACCCGCTCTGAGAATTCAGCGATCGCTCTAGCTATTTAACTTCCGAATATTTCCCAGAACCAGCTGAGGCAGTACAGTCTGCCTTAGACCTTGGCACTTTCTCCTCAAAAGCTTGATCGAACTTGAGTCATGAGTTGATCAATCGCTTTAAGATCTGTGCAACAACATGCAGCTCATTGCCTTCGACGGTACTCAGAGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCACTCGTTGGGAACCACAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //