Array 1 246684-247191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFE010000001.1 Pectobacterium brasiliense strain IPO:4067 NAK:257 tig00000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 246684 28 100.0 32 ............................ ACTCTGTCCACTGATTTACATCTCCGTTTCTC 246744 28 100.0 32 ............................ GCTTACCGTGATATCGCGGGAGTCTGGACGAT 246804 28 100.0 32 ............................ AGCAAAAATCACTCTGGCGTACGGTAGTGAAA 246864 28 100.0 32 ............................ ATCCGGCCTTATGAGCAGTGCGGAGGGCAGAA 246924 28 100.0 32 ............................ AGGTGAAGAGGTTTTCTGTCGCTGTTATGTGA 246984 28 100.0 32 ............................ GTCTGCGCGTTGTTGGCAGCCAGAAGTGAAAG 247044 28 100.0 32 ............................ GGGAAAATCGCGCCTTGAGTTTTACGACGCAC 247104 28 100.0 32 ............................ AGTCGCTCAACGTAAGCCCCGCGATTTTCTCA 247164 28 82.1 0 ..C........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATCCTGACGCTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAGTTTATATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGACACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTGGCTGTGGCAGATCTGCCTGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAAAGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 254686-253098 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFE010000001.1 Pectobacterium brasiliense strain IPO:4067 NAK:257 tig00000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 254685 28 100.0 32 ............................ AATAAAACGCAAGGAATAATCGCGTTTTATCG 254625 28 100.0 32 ............................ ATGCGTCCTTCTGCTGCTCAAGGGCTTCGACG 254565 28 100.0 32 ............................ AATAGTGTGGAACAGACCGCGCTTTGCGCCGC 254505 28 100.0 32 ............................ TGTTTGGCGGCGCGTACTACCAACTCCGACGC 254445 28 100.0 32 ............................ GGAGAAATTATACAAGAACTGGTGAAGTGTCA 254385 28 100.0 32 ............................ AGGCTTGTATCCGCGCTCGGCTTCTATGCGGA 254325 28 100.0 32 ............................ AGTCTGCCGGATAACCTGTCTGTCGGTGGCTC 254265 28 100.0 32 ............................ GCCAGATTGCATCGCCAACACATCCAGGTGGG 254205 28 100.0 32 ............................ ATGACATTGGGCAATACCGCAGGGTTAATTGC 254145 28 100.0 32 ............................ TAACACGCGGGTTTTGTCCGTCGCCTGTATCG 254085 28 100.0 32 ............................ TGCTAAGCCGATCCGGGCTTTCAGGCCACACC 254025 28 100.0 32 ............................ ATTGCGACACCGGCGATCAATTTCGAGCTGGC 253965 28 100.0 32 ............................ GATTGCATCAGCAGCTTTCGCTTGACCGTTCT 253905 28 100.0 32 ............................ GAATGATGACCTCGGCGGTAGTGTAACGTTCG 253845 28 100.0 32 ............................ TGCGCGGTGCGGGTGTAGTTCTCAAACAGGAA 253785 28 100.0 32 ............................ GCGTTTCTTCGGTGATGGCGGGATGAATGTTT 253725 28 92.9 32 ...........G.T.............. TAAAAGAAAAGCGCGAAATAATCGCGTTATGG 253665 28 92.9 32 ...........T.T.............. AGTTTTCTGAACGCTCATCAGCAGACACATCA 253605 28 89.3 32 ........T..T.T.............. GGGGAATTCATCTTCCAGCTTCATTGTTGCTG 253545 28 92.9 32 ...........T.T.............. TTACGCGATATCCGCGCCAGCTCGGTTTCTCC 253485 28 92.9 32 ...........T.T.............. AAAGAGCTATTTATGGGTGCGCAAACCGCTGA 253425 28 96.4 32 .............T.............. TGAACGGACAATGCAGGGAGATCGGCACCTGC 253365 28 96.4 32 .............T.............. GGACAACTGGAGCATTGCGGCGCGGCAGTGGT 253305 28 89.3 32 ...........GTT.............. TTAGGGTTGTAGAATCCCCTGAGCCAGTGATT 253245 28 100.0 32 ............................ TCTGACGTGCATGCGTTCACAAATTCGGCCAT 253185 28 92.9 32 ...........A.T.............. AAGAGATACAAGGATGTTGCGGCGGTATTACC 253125 28 78.6 0 ...........T........T...TCCC | ========== ====== ====== ====== ============================ ================================ ================== 27 28 96.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGTGACAGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCTGGCTACA # Right flank : CTGTCTTAAGCGCCATTATCTGGCTATTATCGAGGTAGCACTATCGTCAGTATTTGATGCGTTATCATCGTTAAATAACGTATTTCTGATTCCCCTTTCTCGTAACATTTTTAAGTAATGGGTTTCTTTGTGTGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATATGACCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCTGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 263609-264593 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFE010000001.1 Pectobacterium brasiliense strain IPO:4067 NAK:257 tig00000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 263609 28 100.0 32 ............................ TGCGCGATGTCCTGCGCACTCTGTCCGGGCTG 263669 28 100.0 32 ............................ GCCCCTGTCAACCAAATATGAGGCCGCCATTT 263729 28 100.0 33 ............................ GTTAAAATTTCCCCAAGCGATGTTGCAGGACAT 263790 28 100.0 32 ............................ AACATTGTTCACTGCCGTATAGGCAGCTTAGA 263850 28 100.0 32 ............................ TGGCCAATGCTCAACCCCATTTGCTGATACGT 263910 28 100.0 32 ............................ ATATCAGCAATGAACGATGCTGCAAACGATTT 263970 28 92.9 32 ...........C.....C.......... CGCGCTAATAGCATTGCCGCTAATATCACTGT 264030 28 92.9 32 ...T.............C.......... CTTGTTTCTTTTACAGTATGTGAAAGGTAATT 264090 28 96.4 32 .................C.......... AAAGTAGTCGGTGGTCGCCAAGTCATCATCGC 264150 28 92.9 29 ...........C.....C.......... ACGGTTCGCTACGCCGCCGCCGGTGCATT 264207 28 92.9 32 .................C.T........ CGAGCAACACAGTATTCATCGCTGTGGAAAAT 264267 28 92.9 32 ...........C.....C.......... CGCTCGCGCACCTGGCGTCAAGACCCCGATCT 264327 28 92.9 32 .........T.......C.......... GTCCTGCCAAGCCATAACGGGCTTTCCGGCCA 264387 28 92.9 32 ...........C.....C.......... ATCAGATAATTTCCTCATCAAACAGCAGTTCA 264447 28 89.3 32 ...........C.C...C.......... ATCGAGGACGAGCTTTGCGCGTCCATTGGATA 264507 28 96.4 32 .......A.................... ATGACTGATTTATTGAGCAAAGAAAGGATGGA 264567 27 71.4 0 ............GC...C..-..C.GCG | ========== ====== ====== ====== ============================ ================================= ================== 17 28 94.3 32 GTTCACTGCCGTATAGGTAGCTTAGAAA # Left flank : AGGCGCTCTCGACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATCAAGAGCTTGTCTAACGGGCAGATGTTTTTCGTGTTTGTAGAACATGGCCCGCTACAGGATGCACCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTCCCTTGGTTCTGACCCTTTTTTGGCGACCAGCTGCAAGTCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGACAAGAAAACCATATTCTCTTTAACAATCTGGTGGTTATCGAAAAAATTCAACT # Right flank : GATTATCGGGATGCGTCGCTGGTGCGACGCATTTTTGAGGACTACTCCCCGTTGAGGGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATAGGGATCGTTAGACTGTTTCCGAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCACTACCTTCATATGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAACGCCGCCGAGGTATGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGGGCGATAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGCCCCCTGCTATCAGGCTTCACGTGCCAAAATCGG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //