Array 1 7334-5314 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCS01000002.1 Listeria monocytogenes strain ICDC_LM0138 NODE_2_length_354916_cov_41.4235_ID_594, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7333 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 7267 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 7201 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 7135 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 7069 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 7003 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 6937 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 6871 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 6804 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 6738 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 6672 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 6606 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 6540 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 6474 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 6408 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 6342 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 6276 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 6210 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 6144 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 6078 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 6012 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 5946 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 5880 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 5814 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 5748 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 5682 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 5616 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 5550 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 5484 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 5418 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5352 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5317,5320,5325] ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //