Array 1 218710-220323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDQ01000014.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000207 CFSAN000207_contig0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 218710 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 218771 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 218832 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 218893 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 218954 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 219015 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 219076 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 219137 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 219198 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 219259 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 219320 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 219381 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 219442 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 219503 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 219564 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 219625 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 219686 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 219747 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 219808 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 219869 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 219930 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 219991 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 220052 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 220113 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 220174 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 220235 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 220296 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236638-237094 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDQ01000014.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000207 CFSAN000207_contig0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 236638 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 236699 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 236760 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 236821 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 236882 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 236943 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 237004 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 237065 29 93.1 0 ............TC............... | A [237092] ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //