Array 1 154624-154390 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJZG01000025.1 Campylobacter coli strain BCW_6913 201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 154623 36 100.0 30 .................................... AAGCTTTAGACTTGCTAAAAGCTTGGAATA 154557 36 100.0 30 .................................... CTTTTTTAATTATTTGAAAACGACATTATT 154491 36 100.0 30 .................................... GGTGTTAGGGTATAAATGAAAGTTTGAGTT 154425 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGCCTATTGTTAATTGTTTGTATGGTAAAAT # Left flank : | # Right flank : AGACTTATCTCAAAAGCCTATTTTATCAATGTTTTTTCTTGTTTTTTAAGCAAAAACTTACGCATACCCTTTTTTCATTTTTTGTTTCTTTAACCTCTCAAAAAAAATTTGTGCCTCATTAAAACTTGAAAATACATTATTTTTTCTTCCTGTGCAACTTTTAAAACGCACATTTCCGTAAACTCTCTCAACCATATATTCCTCAAATAGAGTGGCAATAATTTCTATGCTATAATAGCGAATGTTTCCTTTCTCAGTTATTCTGTGCAACAAAACATTATTCATAAAAAAACCTAATTAAAAATTATTTATTTTATTCAAAAAATCATTTTTAAACATTTTTTCTATAGCAAGCTTAATCATTTGATTAATTTTCTCATTTTCTTTATTTGTATTAGAAATTTCATCTTTGTAAGTAGGAATCATCATTTCTATCATTTTTAATGTTTTTTCATCAAATAATACTCTTTTTGGAATTAATATTTCATTTTTTTGAATAT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCCTATTGTTAATTGTTTGTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 12652-13148 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJZG01000012.1 Campylobacter coli strain BCW_6913 186, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12652 36 100.0 30 .................................... AATTAAAACCACAGAAAGAAAGCTATCAAA 12718 36 100.0 30 .................................... AACAAAATCAATATGAACCCTTGAAGCTCT 12784 36 100.0 30 .................................... TTCACTATAGATCTGAAAGTATTCTTTTAT 12850 36 100.0 29 .................................... GATTGTTGATTCTCTAAATTGCGTTACCA 12915 36 100.0 30 .................................... CCTAACCCTTAAATAGAAAAGTCTTCTTCT 12981 36 100.0 30 .................................... TTTTTCAACAAGTGGAGCATTAATCTAATG 13047 36 100.0 30 .................................... ATCCAAATGAAATGCAAATTTTTCATTAAA 13113 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.7 30 ATTTTACCATGTAAACAATTAATAATAGGCTAAAAC # Left flank : GTAAGAACTGATTTATTTGCAGATAAAGAAAATAAATTCCATGCAGTGTCTATTTATAAAGCAGATTTTTCTACAAAAAAACTTCCAAATAAAACCCCTGCAACTACATCAAATGGAGAAACCAAAGAAGGCATTGAAATGAATGAAAATTATAACTTTTGTATGTCATTGTATAAAAATACTCCAATTAGCGTAAAAATAAAGGGTATGAAAGAGCCTATCATTTGTTATTATCATGGTTTTAATACTTCAGGAAGTAAAATAACTTATAAAAAACACGACAACAATTATCACAACCTTAGTGAAGATGAAATGGTTGTTTTTAGAAAAAATGATAAAGAATCTATAGTGGTAGGAAAAATACTTGAAATTAAAAAATACAGTATAAGTCCTTCAGGTGAATTAAGCTTAATTGAAAACGAAGAGCGTAAATGGTTTTAGATATTTTTGCTCAAAAAATAAGAAAAAACATTGATAAAATAGGCTTTTGAGATAAGTCT # Right flank : ATAGCTTTTAAATATTTAAATTCATAAGAAAATATTTCTTAATCTACTTTCATCGCAACTTTTCAAAAAATCATAGATTTTCTTTCTATAAGTTGATTTATCCTTTTTCCAAGTATTTAGCGTTGGCAATGGAATTGTTGTAATTTTGGCAATTTTAGAATCACTTAAACCTGTATTAGAAGAATTAATAGAATTTGAAAATATTTCTTTTAATTCTTCTTGATTAGTGTTTTTTAAAAAAAGATATATTTTTCCCCTCCAATTGTCTTTTTTTTGTTTCCAGTCTCTAATAGTGAAATAAGGAATATTAGTAATTTGTGAAATTTGGACATCATTGTTCATCAGGCTTGAAACCACTATCTAAAATTATTTTTGTCATTACACCCTTAAGTTTATCAAAATGATTTAAAGCTTGCACATTGCTAACTCTAAGCAATCTTATTTTCCCATCTTTTTTATAAAACACCTGAAAAACTTCATCGCTTTGTTTGCATTTCACC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATGTAAACAATTAATAATAGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //