Array 1 11440-12249 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACCA01000006.1 Yersinia kristensenii ATCC 33638 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11440 28 100.0 32 ............................ AATTATCGACAATTGGGATGAGCTAACCACGC 11500 28 100.0 32 ............................ TCGGCGAGCTACAATCTGTAGCTGACTTCTTC 11560 28 100.0 32 ............................ TTTTATTCTACCCATTCAACCGTGATAAACGG 11620 28 100.0 32 ............................ TGATTTATAAGGCAAAAAATATCATTCATGGC 11680 28 100.0 32 ............................ TCACCGCGCAAATCAACATCCACCTGACGAGC 11740 28 100.0 32 ............................ TCCTCAGCATCACCACCAGCCGCCTATATGGC 11800 28 100.0 32 ............................ GCACCGTTTACAGCTGCCTTTCTTCAACTCAT 11860 28 100.0 32 ............................ TAACGGTGTGCATCGTGCCAGAGAGAAACAAA 11920 28 100.0 32 ............................ ACCTTGTCGGTAACTTGCATCAGAGGCTGCTA 11980 28 100.0 32 ............................ TGTCGTCCTGACTGGCGCGGCGAGTAATCCTG 12040 28 100.0 32 ............................ GAATATTAAAACGAGCAAACTTTAGGATAAAG 12100 28 100.0 32 ............................ AGAAATGATGCTCAGTGATTTACAACGCTGGT 12160 28 96.4 32 ...T........................ AGTTAAGACGAACTGCAATAGCGACGAGGAAG 12220 28 85.7 0 ...........T.........A....TT | CA [12243] ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGCTTTTTGGGCGATTAAACACAAACAAGCTTTACAAGCGGCGGAGCTCTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTCTGTTTCTCCTGCTTGTTATCCTTGCTTAACCCCTTGAAATACCTCAATTTTTAATCGGTCATATTTATTCTTTCTGATACAACAAAACGAGCAAAACCCGCCCCAAAATAGTGAACTATAACTTTTTCAAACCTCCTTTTTGTCCGTCACATCATCCGCAGTAGAAAAGGTTTAATGACATTTTGCCTTAATCCCAACTTGAACCCTTTTTTTAGCGTGTTTTTTAACGCATTGATTTTATATAGAAATCCCCAAGGCTTTTAATAAATCATTTTTTATCACCGCGCTTCAATGCACTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : TGAGAGCCCAAACACATTTTGTTACTTACAGTAGGCTTATTACTGTTTTCTATTACCGACTTTGCCGGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGGCGCGCTCACTGACTGGCAAGATACAATTAACCCGTTAGAACGATTTGGGTGTTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATCTAAAAACAATTCTGCACTCAAAGCGTTCAAATATTTATTATTTAGAATATTGTCGTGTATTAGTTAACGGCGGGCGGGTTGAATATGTCACTGATGAGGGGAAACAATCTCTTTATTGGAATATCCCCATCGCGAATACCACTGTCATCATGTTGGGGACGGGGACATCTGTGACTCAAGCCGCTATGCGTGAGTTTGCCCGCGCGGGTGTTTTAGTCGGGTTTTGTGGCGGTGGTGGCGCACCACTTTTTGCGGCGAATGAAGTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 20741-21309 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACCA01000006.1 Yersinia kristensenii ATCC 33638 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 20741 28 100.0 32 ............................ ATGACGAATGTGACCGGCGCACTCGTTTAATT 20801 28 100.0 32 ............................ ATCTTCGCCAAGCCATTCAAGCTCTACAGATA 20861 28 100.0 32 ............................ AGACGGCAAAGCAAAATAATCAGCCAGCACTT 20921 28 100.0 32 ............................ AGTCAGCGGCAACCAACACTGGCGACCGGTCA 20981 28 100.0 32 ............................ AGTCAGCGGCAGAGGTGTCTGGATCGCAATCT 21041 28 100.0 32 ............................ GCCTACAACAGCCAGCCGGATAACATTGTTGT 21101 28 100.0 32 ............................ TGGATGGTGTCGGTCTGCCGTACCAGCAGAAG 21161 28 100.0 32 ............................ AAGTAAACGCGAACCAATGGCGGCTAAATTAT 21221 28 100.0 32 ............................ GTGAAAATAGCGATTACAACGTGCAAAAGACC 21281 28 92.9 0 ...........T........T....... | T [21301] ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGCGATTTAGTCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGAAATTATTCCGATACCGACACGGGTTCAATATCGGGTCGTGCGCCGCGTGCAGGTAAAAAGTAATGCGCAGCGGCTACGCCGTCGTTCTGTCAGTAAAGGCTGGCTGACTGAGGAAGAGGCTCTATTACGGATCCCTGATAATCGCGAGCAGCACTGTCATTTACCTTTTTTACGCTTAAAAAGCCTATCCAGCGAGCAAAGCTTCTTGTTATTTATTGATCAAGGCGAGTTACAGCAAGCACCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTGCCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTCGGCCAACTCTAACTCATTGATTTTATATAGAGTTGGCCGAGAAGATTAAAAAAGCCTTTTTTATGATTTTGGTGGGTTATTTTATTATAATCATTGTGTTATTCGTGTTTCGTTACT # Right flank : ATCTATCCGGCGTCTTATTTCTCCTTTTTCGTTGAATACCTCTAAAGAGGTATATGTTTGATTTTATGTAAAAATTGTTTGGTGCTGATTTTTTTTTGAGCTGGTTCATAAAATTAAATACCCACACAAAGAATGTTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCCACTGGGCGAAATTTGTCATGGGTATCTCTGGGTGAGTGTTTGACATCCTGGTGCGGGTTTAAAAATAAAAAAATGACTGCCTGGTGCCAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTTTTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAATGATAAGTTCGCGCAGCAGCATGTGGATCAATTCACCTCTTGGTTGAAAAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //