Array 1 68270-66105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTP01000033.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 50265 50265_c33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68269 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 68208 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 68147 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 68086 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 68025 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 67964 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 67903 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 67842 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 67781 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 67720 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 67659 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 67598 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 67537 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 67476 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 67415 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 67354 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 67293 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 67232 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 67171 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 67110 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 67049 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 66988 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 66927 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 66866 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 66805 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 66744 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 66683 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 66622 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 66561 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 66500 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 66439 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 66378 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 66317 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 66256 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 66195 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 66134 29 100.0 0 ............................. | A [66107] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 87874-84815 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTP01000033.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 50265 50265_c33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 87873 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 87812 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 87751 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 87690 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 87629 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 87568 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 87507 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 87446 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 87385 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 87324 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 87263 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 87202 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 87141 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 87080 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 87019 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 86958 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 86897 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 86836 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 86775 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 86714 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 86653 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 86592 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 86489 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 86428 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 86367 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 86306 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 86245 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 86184 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 86123 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 86062 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 86001 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 85940 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 85879 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 85818 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 85757 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 85696 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 85635 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 85574 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 85513 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 85452 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 85391 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 85330 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 85269 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 85208 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 85147 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 85086 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 85025 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 84964 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 84903 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 84842 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //