Array 1 131305-132198 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VAIF01000039.1 Mannheimia haemolytica strain UGA-A6-141-3 NODE_2_length_155362_cov_164.694__reversed_, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
    131305	    32	 100.0	    35	................................	TTACATATTGCCAAAGGCAACCTAAAAGACCACTC	
    131372	    32	 100.0	    33	................................	TTTTTATTGTTGATTTTGACAATAGACTAATGT  	
    131437	    32	  96.9	    34	T...............................	TATTTTTTGTATTTTTTAAGAATTTTATTAAACT 	
    131503	    32	 100.0	    35	................................	TGATTTACTAGACCTTTTAACAAATTATAAAAATT	
    131570	    32	 100.0	    34	................................	ATCATTCCAGTTTTCAGCCGTTCGCCTTGCGGTG 	
    131636	    32	 100.0	    34	................................	ACCACCTCCTCCGAGATGGTAGGCAAGGGGATTA 	
    131702	    32	 100.0	    34	................................	ACCCGCTTGCGGTAAAGCTCTAGGCTCTCACCCT 	
    131768	    32	 100.0	    35	................................	TCTTAAATCGCTATCGCTCTCTTCATCTGCGCCAA	
    131835	    32	 100.0	    33	................................	CAATCAAGGCGGCCATTTCGGGGGTAAATTCGT  	
    131900	    32	 100.0	    35	................................	AGGGATAAGCTCTTCGCCCTCGCTGCATTGCATTA	
    131967	    32	 100.0	    34	................................	GCTTACATCTAGACAGACGAGCAAGTGCTGAAAC 	
    132033	    32	 100.0	    35	................................	ACTGACATCGGCGTAAATGCGTGGAAGATTTTCGA	
    132100	    32	 100.0	    35	................................	TCCGTGTTTGTGGTTATGTTGATGTACAGGCAATT	
    132167	    32	  96.9	     0	.......................T........	|                                  	
==========	======	======	======	================================	===================================	==================
        14	    32	  99.6	    34	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                   	       

# Left flank :   TTGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAGTATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTGTAAGG
# Right flank :  CGGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAA

# Questionable array : NO	 Score: 9.24
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [8,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-1.40,-2.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.78,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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