Array 1 24941-23333 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNIX01000023.1 Lentzea jiangxiensis strain CGMCC 4.6609, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24940 29 96.6 32 ............................G CCATCGAGCTCACCGAGGACGACTGGGAGAAG 24879 29 96.6 32 ............................G TCGATCTCAGGCTCGGGCGGCGGCCCTACCGG 24818 29 100.0 32 ............................. GCGATCTTGTACGTCGGCGCGGCCACGTCGCT 24757 29 100.0 32 ............................. CGGTCCAGCGCCCGCAGGATCTGCCAGTGCTG 24696 29 100.0 32 ............................. AAGGCCGGCCGGTACCTCGGCCCGCTGCACCC 24635 29 93.1 32 ..A.........................T TCTGGCTGCCATGCCGCCCGGCGTGTTGCGGT 24574 29 100.0 32 ............................. GCGGTTCAGATGCCGGACAGGCCGAGCATGCC 24513 29 96.6 32 ............................G GGGTGGATAGGGCCCGACGTGGCGCGCCGGAG 24452 29 100.0 33 ............................. GCGGATGACGATGCCGCCGCCACACACCGGCCG 24390 29 96.6 32 ........................C.... GCCGTCCGGGTCGGGTACACCGTGTCCGCGCA 24329 29 96.6 32 ............................T GAACCCCCGTCATCCGCAACCTGAGGGAGACC 24268 29 96.6 32 ............................G AGGGCAAGAGCGTCGGGTCCAAACTGGACAGT 24207 29 96.6 32 ............................G CACCCCACCCTGTTGCGGCGCCGGAGACTGCG 24146 29 100.0 32 ............................. TCGGGGCCGCCCTCGACGATGGCGGCGGGGTC 24085 27 89.7 32 ..........--................G TAGACCAGACCGCCGTTCTCGCTGGCGAGCAT 24026 29 96.6 32 ............................G TAGCGGGCGGCCGGGGCCGGGAGCCACCAGCC 23965 29 100.0 32 ............................. TGGTCATCGTCGACGACCAGTTCCCGCACCGG 23904 29 89.7 32 .........A............CA..... TGGTCATCGTCAACGACCAGTTCCCGCACCGG 23843 29 96.6 32 .........A................... GGCTCGGCGAGCAGGTCCTCAAGGATCGTGCG 23782 29 93.1 32 ...C........................T GCCGTCTCGCCCGCTACACCCCCGACGGCGGG 23721 28 86.2 31 ...C...-......T.............G CGGCGCCGCACGTCCAGCTGGTGTTCACCTA 23661 29 82.8 30 .A.C.........A...A..........G CTGGCGTCGAGGAGCAGTCGGCAGATCGCC 23602 29 69.0 29 .C..CT..T...T..........CAG..G TCAGTTGGATCGGCCGCCTGTGAGACTCG T,G [23581,23598] 23542 29 96.6 32 ...C......................... GTCAAGTCGTAGTAGCCGACCGCGCTGCGCTG 23481 28 82.8 32 ...C...T.........-.....A....A AAACTCGGGATCACCATAGTGGCGCTGTCGCA 23421 28 86.2 32 ...C...T.....A.......-....... GGCTCCATCGGCATGTGGTGCGCCGGGTCGAG 23361 29 89.7 0 ...C...T....................G | ========== ====== ====== ====== ============================= ================================= ================== 27 29 93.6 32 GTGTTCCCCGCACGCGCGGGGGTGGTCCC # Left flank : GGAGGAGCACAACTAGTACCTAGTCGCTCGGAACACCTCCGCAACCGCGCAGAGAGTGTGTGAGGTAGACCATCAAGTTCAGGTAGCCTACTAGTACTTAGTCGCTGTTCGCAAAGTAGCCAGAGCAGAGCCGCTGCTTGAACTCGGCGGCACAACATCCCGCCAGGTCATGAACGGCTCGCGTACCGACGTTCCGCTGCTGCACCTGTCCGGCACGGGTGCAGCGAGTTGCTTCAGCGACTCCTCAAACCGATGGCCACCTCGTGCAGTCGGTCGGAACTCAGCTCTGAGAGCAAGGCCGGACTGCAGGCGGGAGCACCAGAACATGGGAACACGGCTGACCAGCAGCTTCATAGTGAGCCTGGTGGTGGAATCATCGTTCAAGCTATCCGTAGCTGAATAGCATCCAGGGAAGGGTGCTTGAGACCAGGCTCGTCGACGTCGAACAAAGTTAAAGCTAAATCAGTACTTGGCTTCACAACTGCGCTGGTCAACAAGTG # Right flank : AACAGGTTCGACCACAGGGGACCGGGCTTGGCCGTGCTCCCCGCATGCGGGGGACTCTCGAGGTGCTCCCCGGATGGCAAGGTCGCCGGCCTAACCACCGCGGCCGCCGCTGAGGTGGTGGCGCATGACGTTCACGTCCAGCATCTACAAAGAACTCGTCGTGCACGACTTCGGCGTCAGCTTCCGCAACGGCGAGGCCGAAGTGACCGGCAAGCCACCGCAGACGCCCTGCGCGCTCTGCTCGCGGAGCTCGGCGTGCGCGCGGTCGGCGGCCGACCGGCCAAGAAACAAGTGCAGGGCTGACTGCACGCTGGTGGTCATCACAGGACACTCGCCCGGCTCAGCACCATAAGGACTGCAACGCCAGCGCAGACCCTCCAGCAGCGCGCGGGCCGTCGCACGCGCACGCTCAAGGTCTTCGTGAACCGGCTGTCTGTCCACGGTTCCAGTGTGCACCTGCGATAACCACCGTCGCCGCCGAATGCATTTAACACAGCTGG # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [29-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34910-36212 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNIX01000023.1 Lentzea jiangxiensis strain CGMCC 4.6609, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 34910 30 100.0 31 .............................. TGTTCCGCCCCAACCGGTGCAGTGCCGCCTT 34971 30 93.3 31 ............................GC AGTCGGAGCAGAGTCCGGAGCGGGTGTAGTG 35032 30 93.3 31 ............................GT GGGCGACCAGCCGGCAGAGGGCGTTGAGCGT 35093 30 100.0 25 .............................. AGGTGGACGGCGCGCCCTGCCCGGC 35148 30 100.0 31 .............................. GCAAGGGCTACCCCACGCTGCGCGAGGCATT 35209 30 96.7 31 ............................G. GTCTGCTCGCCGAGATCCGCCAGGCCGGCCG 35270 30 96.7 31 .............................A GGCGGTGCTCGACGGGCGGGACATTGCCGGG 35331 30 96.7 31 .............................A GCAGGAAGGCGGCGGTGCCGCCGGGGATGTC 35392 30 100.0 31 .............................. TAACGCGGCACCGCTGGGTGCCACGTGCTAT 35453 30 100.0 31 .............................. GCGACGCCGTGCGCTCGGCGAACTCGCGGCA 35514 30 93.3 31 ............................AT CGGGCCAGAAGGTTCGCGTGCTGACCGGGGA 35575 30 96.7 31 .............................T TGGGCAACATGCTCAACATAGAACGCATCTT 35636 30 93.3 31 ..............G..............T CGCTCCCGGCCTACACGCCCGGAAGCGCCGC 35697 30 96.7 31 ................A............. CCTCTGCCTGGTCGTTACGCCGGCGTGTCTG 35758 30 93.3 31 ............................GT TCGTGGGCCCGGTCGCGAAGACTGTCGGCGC 35819 30 93.3 31 ........................C....A GGCCGGTGAGGAACCCCGACACCGACATGCC 35880 30 96.7 31 .............................T GGGGGTCCTCCTGGTCGAGCTTGTCCAGCTC 35941 30 93.3 31 ............................GA CACGGCACGCCGTCACACGCGTAGGTGCAGG 36002 29 90.0 31 .....T...........-.....A...... ACGCGGAGAAGCTGGTCTCCTCGATCCGCAA 36062 29 86.7 31 ..........T.-.....A..........A GGCCTCCGAGTTCGCGGGCTTCGAGGATGCC 36122 30 83.3 31 .........A.......C...G......TC GCTGGCGCAGCTACCGGCGGGCGGTGGCCTC 36183 30 80.0 0 ...T.............A.A.G......GA | Deletion [36232] ========== ====== ====== ====== ============================== =============================== ================== 22 30 94.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GAAGCCTTCGACGACGTCGACGTGGTGCGGCTCTGGGACTCAGACGGACGCACCGTAGCCGGAGGCACCGCCTACGGAGACGACGAATGACCGTGATCGTGGTCGCCGCCTGCCCCGTCGGATTGAGGGGACACCTCACCCGCTGGCTGCTGGAAATCTCACCCGGTGTCTTCGTCGGGAAAGTAACCGCACGAGTCCGCACCCTCATGTGGATCCGCGTACTCGACATGGTCAGCACAGGACGAGCGATCATGGTCCACTCAGCGGACAACGAGCAAGGACTGTCCTTTCAAGTCCATGACCACAACTGGAAACCGGTCGACTTCGAAGGGATCACGCTGATGTTGCGCCCCGCGGCCGATACCGAGAACGTCGGCGAACCATCCGAGCCGCGGCGGCAAGGATGGAGCAACGCCAGTAAACGACGACGCTACAGACGCTGATCTTCAAAGCTGAATCAAAAACACACTTCGCTCCAACAAACAGCGTGGTCAGGAAGT # Right flank : ACCTCGCGCGCAAGGCCGACGTTGTCCACGCGTGCTCGCGGGGGTGGCCGAGCTTCAACCGGTCGAGTCTGTGACGAACCCGCTGGGCGCGTCCCAGAGTGTGATCAGGTCAAAAATTAGGTCAGGCTGGTCGAGACTGAGCGATCACTGCTGCCCGCCTCAAGGTGCAGACGTCCGCTGGCCGGTCGACCACCACGTGCTGACGCTTAAGTTCCCTCTCGCCCGTCATCGCCCGCCTCGGCGTTGACCACGGCGTTGACCACGGCTCCGGCCTGGGCACAGTCCGCTGGCCGGTCGAACGCAACTTCGCCTGCCTCAAAAGTCTCCGACGACTCCGCGTCCGCACCGAACGGCGAGCCGAGGTCTATCAGGCCATGCTCAGCCGCGCCTGCCCAATCATCTGCCTGCGCAAACTCATTCTGAGCTGATCACTGAGGCCGGTGGCGAGTGTGAACCCGACCAGTTGCACACTTCGGGCCCGAGAATGTCGGCCCGCCTCA # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //