Array 1 577-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCOT010000128.1 Escherichia coli strain PE01_373 .PE01_373.128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 576 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 515 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 454 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 393 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 332 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 271 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 210 29 100.0 32 ............................. TACAGTTTCCATAAATTCGCCTAGGTTATATA 149 29 100.0 32 ............................. ATCGGACGATGGCGAGCGAAATCGCGCGGGAA 88 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAGGAAGAGCGGTGGTAAAACGTACTGGAAAGAGCCGGCGACGGTGGGCGCAG # Right flank : C # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 110-1297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCOT010000110.1 Escherichia coli strain PE01_373 .PE01_373.110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 171 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 232 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 293 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 354 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 415 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 476 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 537 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 598 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 659 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 720 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 781 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 842 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 903 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 964 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1025 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 1086 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1147 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1208 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1269 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCTGAGAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15746-16446 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCOT010000015.1 Escherichia coli strain PE01_373 .PE01_373.15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15746 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 15807 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 15868 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 15929 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 15990 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 16051 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 16112 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 16173 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 16234 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 16296 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 16357 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 16418 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //