Array 1 107863-106081 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHLO01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N50430 N50430_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107862 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107801 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107740 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107679 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107618 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107556 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107495 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107434 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107373 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107312 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107251 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107190 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107129 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107068 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107007 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106946 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106885 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106824 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106762 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106659 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106598 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106537 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106476 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106415 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106354 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106293 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106232 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106171 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106110 29 96.6 0 A............................ | A [106083] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125488-123995 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHLO01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N50430 N50430_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125487 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125426 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125365 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125304 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125243 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125182 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125121 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125060 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124999 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124938 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124877 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124816 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124755 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124694 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124633 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124572 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124510 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124449 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124388 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124327 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124266 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124205 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124144 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124083 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124022 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //