Array 1 3091455-3090496 **** Predicted by CRISPRDetect 2.4 *** >NZ_LK996017.1 Desulfitobacterium hafniense strain PCE-S Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3091454 30 100.0 36 .............................. ATAGTTGGGTCAAATCCCCAGCCATCCTTGAGCTTC 3091388 30 100.0 38 .............................. AAATGGTGGACTTGAGGGGAATGTCAAAAAAACGTCAT 3091320 30 100.0 36 .............................. ATTAAACAGAAAAAAGAAGAAGCTCAGTCCCTCGAA 3091254 30 100.0 38 .............................. AGATAACTTTTAACCCATTCCTCATCTTCCCATTTATG 3091186 30 100.0 37 .............................. TTCATACTCTCGCCGCCAGGGCCATCGAGCCACGCCG 3091119 30 100.0 37 .............................. AGTGCAAGGGCCGGCGGCTCACAATGCACATCTACTC 3091052 30 100.0 36 .............................. GTTGGTTTCTTCTCCTTGGCTTTACGCACGAGCTCA 3090986 30 100.0 38 .............................. ATGTGTTGTCTCTGGCTTTAAGGGCTTTCGCTAGCTCA 3090918 30 100.0 34 .............................. AGCTAACACTAAAGGCTACACTTAGCCCCCTCTT 3090854 30 100.0 34 .............................. CTGCTGAAAAAGACGGGCAAGGATTGGGGCGCAG 3090790 30 96.7 36 .................G............ ATCTCTGATAATGCGGTTAAGTTATTCGTCTCCCTC 3090724 30 96.7 35 .................G............ AGCGTTAGCTCACTAAGACCCTCAAGGCGTTTTCC 3090659 30 96.7 36 .................G............ ATGCGACTCCAGTCTCCGTCTCAGCCCTAGAAGATA 3090593 30 93.3 38 ........T........G............ AATACATTAAGCTTTTCCGACAAATCGGAACGGTCTAG 3090525 30 90.0 0 .......A.........G...A........ | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 98.2 36 GTTGTTAGCTTACCTATAAGGGATTGAAAC # Left flank : GAGCACACTATCGAATAGACGGTATGCAGCGACTTTTGAAAGGGATAGGCATAAATTTAGGGGAGAGAAAATTCGGAAGATGAGGTATACTTATGTTTGTGATCTTAGTCTATGATATGGGGGAAAAGCGGGTAGCCAAAGCACTGAAGCGGTGCAGAAAGTACCTGAACTGGGTGCAGAATTCTGTCTTTGAGGGAGAGATTTCGGAAAGCAATCTGGCAAAGCTGAAGATGGAGCTGGACAGGATTATAGTGCCGGAAGAAGATTCGGTTATTATTTATACACTGAGGACGACCCGATATTCTGAGCGGGAGATCATGGGCTTGCGAAAAGGAGGCCAGAATTTAATCATATGAAATTGTCGTCGATGTACAGTAAGGTAAAAATCCCTGGAGATCGACGACAAGGGATGTCGCTTAGTAAGCGGTCTGCTGAGAAAGGTGGAATTTTTGAGATGGCTTTGGGGAGCTGTAGATGTTGATTTTATGCGGGAAAAATGG # Right flank : TGCCGATTGAGGATTCCCGGGAGTCTTTCACCGCGGGTGTTTGACCTACCTTAATTCGGTTTACTAGCGGGCCGTGAAACGGGCTGCTGACAACGCAACAGGCTGTATGCTCCCATAAGAGGGAGTATACAGCCTGTTTGTTGTGGGGGATGGGTGTGAGAGCCATGCCCGCCAGAATCCCTGTAAGGAGAACGAGCAGAAAGCGAGCGGAGAGCTGGACGATGATGTCGCGGCTTGTAAATCCATAGGGTCATGAGCAGTGCCCCAAGGAATCCTCTGGCAGAGACGCTTCCGGGCGATCGTCTGGGCGACATAACCGTCGATATCGGCAATCTTGGCAAAGGGAAACTGTCCGGTGTAGTCTCTTACCTTGTCACGAATAGAACTATTGGGAGTTATTGGAGGAGGAAAAAAGACAGTTGTTCGCACAATGCTGACTCGGGAATCGGAACATTGATCTTGACCTTGCCCCTGCTCCCTGCTTTCATTCTTACTCTTTT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATAAGGGATTGAAAC # Alternate repeat : GTTGTTAGCTTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 3098767-3097090 **** Predicted by CRISPRDetect 2.4 *** >NZ_LK996017.1 Desulfitobacterium hafniense strain PCE-S Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3098766 30 100.0 36 .............................. CCCCTCATCTCCCATGCATACCGCCCCAGGGTGAAA 3098700 30 100.0 36 .............................. AACAAGCTCATCGACCTGTGCGTGGATATTTGCCAG 3098634 30 100.0 38 .............................. CCCGGATGACCCTGGCTGCGCTTCTTGCCTTGGCCGCG 3098566 30 100.0 36 .............................. AAAGGTTTCAGAGCGAAAGGCCAAGTAAGGTTAGTC 3098500 30 100.0 36 .............................. TCCTGCTAGAACATCTCTAACTGTTGTACTGGCTTA 3098434 30 100.0 39 .............................. CTCTAAATGAATGCCAAAGCCGCACATACTGCAGCCAGT 3098365 30 100.0 34 .............................. CATTTTAAAACTGCCACCTCACCCTCAACTTCGA 3098301 30 100.0 36 .............................. GCCTCAACGCTTCATATTGGGCAAGCGCGGCATAAG 3098235 30 100.0 38 .............................. TGGTGTCGTCTTGCTCTCTGAGTGCGTCGATGACTAAC 3098167 30 100.0 35 .............................. TTTTGATTAATGTTTTGGACCCGGCAACCATGAAA 3098102 30 100.0 36 .............................. TTAAGCAAGCTCCGGACTTCCGGCCAATACTTCAAA 3098036 30 100.0 35 .............................. GGTGATGGATCGATACCAATGACCGGGATTCCATC 3097971 30 100.0 36 .............................. ACGGCAAACCCAGCGAACAAACCCGCAGCCTGCTAA 3097905 30 100.0 35 .............................. CGTGGACGATGGATGACATTAACACTTGGTTTAAC 3097840 30 100.0 36 .............................. CTGTATCCCGCTGCCATAGCTGCCCTGGTCGCGTTG 3097774 30 100.0 36 .............................. CTTTTGAGCACGCGGATTATTTCTCCCGTATTTTCT 3097708 30 100.0 34 .............................. CCAGTCAGAAAAGACGGCTTGACTATCCATCCAT 3097644 30 100.0 35 .............................. ACCACAGAGGATATCTCTCGCAGTAGAGCAACTCT 3097579 30 100.0 34 .............................. AGATATCCAGCCGCTTAAACGACGTATTATCCAG 3097515 30 100.0 36 .............................. TTCCAAGGTGAGGAGCTCTCCGTCCTTATCAACCGC 3097449 30 100.0 36 .............................. CTCATGTGCCAGCAGAATGGTTTGTTCAGGGAAAAC 3097383 30 100.0 35 .............................. TGATGTATCTCATGAGACGGAGCTGCCGGCGCGTA 3097318 30 96.7 36 .................G............ TAGTCATACCAATCAACATGAAGATCGTAGGCCAGC 3097252 30 96.7 35 .................G............ AGAATTTCCGAAGAAAGCTGAGTCATGATTTCGCC 3097187 30 96.7 38 ........T..................... AACAGATACATCCAGGCGACGACACGGAGGACACCCAG 3097119 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================= ================== 26 30 99.5 36 GTTGTTAGCTTACCTATAAGGAATTGAAAC # Left flank : CTGCATGGGATAAATTCAGCCTTGATGAAAAGGCTGTGAAATTTTCAAAGTATATGGCGGAGCTCTGGAAGATACATTGCTTTCGAGAAGGGAATACAAGAACTGTAGTGACCTTTTGCTGTCAATTTGCAGAGAGCAGGGGATTCAGCGTAGATAGAACATTATTTCAAAAACATAGCGCTTATGTAAGAACGTCATTAGTGGCAGCATCAGCCTACTTTTCGGATCTAGGAGATAGAGCACAGCCTGAATACCTGATTAGAATTGTTAGGGACAGTATCGAAAGAGGACAGAGGAAAGCCTCGCAGAGAAACGTTTAATTATAAGACAAGAAAGAGCATAAGCGTTACATTGAAGTTGTCGTCGATGTGCAGTAAGGTAAAAATCCCCGGGGATCGACGACAAAGAATGGGGCTTGGTAAGCGGACTAAAGAGAAAATGGCTGATTTGGTTAATCTTGGTCAATGGCTGTAATGGCCTATTTAATGCGGGCGAAATGG # Right flank : ATGAACTTGGTAGGGCTTTGTTTGATGTTCGTTATCTTGACAAGACCCTTGATAATTCCCTTAAGGCCTGTGAACAGAGTTTAAAGAATATATGTAATACATTTCGCTGGCTGCAGCTCCTGGCATTGTATTACATATATCCTTATGGTAACATAAAAATTAGGAGGGATAAGGCGTGGATGATAAATTAGATTTGATTTTAGACAGATTAACGGCAATGGATAGAGGCTTAAAAGCTGAGATAAGTTCTTTAAAATCTGAGATAGGCTCTTTAAAACCCGAAATAGGTTCTTTAAAATCTGAAACTCAGGCGATTAGTAAAAAGGTGGATATGACATGGAGAGCCATTCAGGAATTAAGGGATGATAAAACTGAGTTGAACGAACTTCGTAAGAGAATAGAAATTTTAGAATCAAAATTAGCAATGTAATACATACCCAGATGGCAGCTCCGCGGTCGGCTTTGCCCGGGGATGGAGGCGAAACATCGGTATAAATCTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 3101492-3100393 **** Predicted by CRISPRDetect 2.4 *** >NZ_LK996017.1 Desulfitobacterium hafniense strain PCE-S Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 3101491 30 100.0 36 .............................. TGCCTCAAAGGGTCCAGGAGCAATCCGTATGTCTTT 3101425 30 100.0 36 .............................. TAAGTGTCCTTCGGGACGGCATGCTTGGGGAATTCC 3101359 30 100.0 35 .............................. AAGTTTGAGTTGGCCACATGCAAGTGGTTTTTGTA 3101294 30 100.0 39 .............................. ACCGTCTGGCTGATTATCAGGATACTGGTCTATCACCAA 3101225 30 100.0 39 .............................. AAGCCTGGGAAGCCGGATTCATGAAAAAAGCCAAGCGAG 3101156 30 100.0 38 .............................. AGGCTCTGGAAAAAGCCTTTACCAATAAGAACCGCCGT 3101088 30 100.0 35 .............................. GTCCATGAGCCGGTGACATGGCAGGAGGCTATCCA 3101023 30 100.0 35 .............................. CCCGAGGTCAGAGCAAGTAGCCAGGTGCGGTCATA 3100958 30 100.0 35 .............................. CGAAGGATATCTCAGTCATGGCCGGCACCTTCGAG 3100893 30 100.0 36 .............................. TCAAAATCGTTGCCGGACTCAGTAATGTGAAATTCG 3100827 30 100.0 41 .............................. CATTTTTTGCATACCTTGTGTGGTGCTATTTTTTTACGCCG 3100756 30 96.7 34 ........G..................... TATTTATTTCCTGGTTTTCTATTCTGCACCCCGG 3100692 30 100.0 35 .............................. GGGGTATCCACCGCCGCACTGAATCAATACCTTAA 3100627 30 96.7 36 .....................A........ AACAGATACATCCAGGCGACGACACGGAGGACACCC 3100561 30 93.3 41 ............A........A........ TTCCCTGGATGTCTCCAGGTCCATTTCCCGGAAGGCTGCAT 3100490 30 93.3 37 ........A............A........ TATATGGCAGTATTTTTCAACTAATTTTTCATTCCCA 3100423 30 83.3 0 ........T........A...A.A..G... | C [3100399] ========== ====== ====== ====== ============================== ========================================= ================== 17 30 97.8 37 GTTGTTAGCTTACCTATGAGGGATTGAAAC # Left flank : TGACTAAGCCGATACTCTATAGGGTCTACCCGGAAGTATCCTATCCTGTGGCGGAGGGAAAGGAAATTGAGATGAGGACAGTTGTACCTACGGCTCTTATCCGGGAGATCGTTCTCAAGGCGGATCGCTACTATTGCCGGGCAGGTGGGTATTTGTATGAGTATAAAGGGCAGCGGACCTTTGAGAAATCAGTGGATTTCCTTTATGAGAAAGACGGGAAGCCTATTGCGTTTATCCCTAAAAGCGATGGCCCGGATTCGCCTTTGGATCTCAGAGTGGCGCAGTTCGGAGAGGATTTGGTATGTCTTGTTTAATGGCCTTGGCTTAATGGGCGGAGATTATTTTGCTATATGAAATTGTCGTCGGTGTGCAGTAAGGTAAAAATGCCGGAAGACCGACGACAAGGACTATGGCTTAACAAGCAGCTTGTGGGGGAAAACGCGGATTCTCTGGGCTGAACTTGTTAAGCCATAAATGCTGATTTTATGCGGGTAAAATGG # Right flank : GCAAAAATTACAAAAATAATGTCACCGTAGCTTAGTGTAATGTAAAAAAATATATGTAATACATTTCGCCGGCTGCAGCTCCTGGGATTGTATCACAAATGTCGTTATGGTAACATAAAATTCAGGAGGGATAAGGCATGGACAAGTTAGATATTATTTTACAAAGGTTGGATAGTCTCGATCGTATTGAATCTGAGATTAAGGCGTTAAAAGCTGATCATCGAGAAACATATAAAAAACTTAGTAAGATTGATGGAATTTCCGTTATGCAAGGATTAACATGGAGAGCCGTTCAGGAATTAAGGGATGATAAAACTGAGTTGAACGAACTCCGCAAGAGAATAGAAATTTTAGAATCAAAATTAGCAATGTAATACATACCCGGTCCGCATCTCCGCGGCCGGCTTTTCTTTTTGTATTATAAAATTTCTGGAGTGGGGTTGTTAGTTTACCAATGAGTTGAAATTTTGCGACCTATTCAGCAAGCCCTAATTACAACG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 4 3109191-3106701 **** Predicted by CRISPRDetect 2.4 *** >NZ_LK996017.1 Desulfitobacterium hafniense strain PCE-S Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3109190 30 100.0 35 .............................. TGAAGATATGCGGGTCCGTCGAAAAATGGGAGTGA 3109125 30 100.0 36 .............................. ATCTGCATCTGCAGAGCCTCCAACCGGCTCACCCGG 3109059 30 100.0 36 .............................. TTCTTTAAGGTTCCTCTTACAACAACCTGTAATTCT 3108993 30 100.0 35 .............................. ATGTACCTCTCCGGCGCTTTGTTGGAGCCGCGGCA 3108928 30 100.0 36 .............................. TGCCAATCGCTGAGGTAATTGACATACAGGGGATTA 3108862 30 100.0 36 .............................. CTTCAATCTTCGATCCTTTTAAGAACTCATCTTTAG 3108796 30 100.0 37 .............................. TCCATCGAGGAGCTGGCGCAGCGGACAAATCTGCCGG 3108729 30 100.0 36 .............................. AAGCTCAATCCGGCCAGCTTACTCCCGCGGAACTTC 3108663 30 100.0 37 .............................. GTTCATGACCCTTATATCCTGCTCAAGCTGCTCTTTA 3108596 30 100.0 35 .............................. GTTCATGGCGCAACATGCTACGATTGGGACGACCA 3108531 30 100.0 35 .............................. TTCAAAATGAGTATTAGCCACGATCCATTTCTTAA 3108466 30 100.0 36 .............................. GGCTAGAGCTATGGTTGATAAAAAGCCCTTAAGGGT 3108400 30 100.0 39 .............................. AACGGATGATCCTCGGGCTGTGGGTAATGGCCGAAGGAA 3108331 30 100.0 37 .............................. TTATTGCGGCCACTGCGGGCGGATTTATCGGAAAACT 3108264 30 100.0 40 .............................. CATTCTCGGCACACCGCCTCATCGTATTCTTCGGATGCAA 3108194 30 100.0 35 .............................. AAATATTTAATGGCCTTGGGCTCTGCGCAATCTGC 3108129 30 100.0 37 .............................. ATATCCAACGTGGCTAAAAACTGATACTTCTGTACCT 3108062 30 100.0 37 .............................. TTTAGCTCGGGACAGCTTAGGCTGCTCATTTGGATCA 3107995 30 100.0 36 .............................. AAGAAGAAGGTGCAACTGTCGTACCGGCCCGGCTCT 3107929 30 100.0 38 .............................. AAAGCAATCAAAACGGAGCCGCTATTTGGGCACCGCAG 3107861 30 100.0 36 .............................. CAGCCACCTGTGTGGACTCTGGAGGGCACTTAACCA 3107795 30 100.0 38 .............................. ACGCTTTCTTGGTGGCTCTTATCGCCGGCGCCGCGCAT 3107727 30 100.0 38 .............................. CGATCATGGCTGTTAAGAGTTGCTCATCAACTTTAAGC 3107659 30 100.0 37 .............................. ATGGGACAAGAACTCGAAGATGTATCGGCATACGCAA 3107592 30 100.0 36 .............................. ATTCTCTCAAGCAGTTGCTCATACCTCCATAAGGTT 3107526 30 100.0 36 .............................. TTGGCTATCCTCTCCTCAATGACCTGCTTCCCCGTC 3107460 30 100.0 35 .............................. ATTTTGAAGCTGCGGCTGTCGGAGCACCGCACAGA 3107395 30 100.0 37 .............................. AGTGGATATTACGGACGAGATTGTTTATTCGATGCTG 3107328 30 100.0 37 .............................. TTCTAAAAATATTAATAATCAGAGTATTGATAATTTA 3107261 30 100.0 35 .............................. AAAGATAAATATGGTCTTGATCTGCAAAATTATAA 3107196 30 100.0 36 .............................. CTGGTGAAGGTGAGGTTACTATCCCACATGGATTAA 3107130 30 100.0 36 .............................. CCAACTTCAGCGAGTTTTCTTGTCACCGAAGATTGC 3107064 30 100.0 35 .............................. AGCTGCTCACCAAAGAGATCGTCTTTGAGGAAGCA 3106999 30 100.0 38 .............................. AGGAGAAGGATATCGCCTTCTTCTTCTCTCTCGAAGAG 3106931 30 100.0 36 .............................. GCTCGTCCTGTCGAGGCTGTGCCAAAGGTGCCTTCG 3106865 30 100.0 37 .............................. ATGATCTTGCGACACATGTAGAACAAGTGGGGGAACA 3106798 30 96.7 38 .....................G........ AGGCAAAGACCCTACTGGCAGTATGATGCCGTCAATGA 3106730 30 96.7 0 .....................G........ | ========== ====== ====== ====== ============================== ======================================== ================== 38 30 99.8 37 GTTGTTAGCTTACCTATGAGGAATTGAAAC # Left flank : GGGCCGAAAGAGCTGCTTCAGTTGGCCGTCGATGGAGGAATAGGAAGTAAGAACAGCCAGGGGTTCGGGTGTGTGGAGATTATCAATGGATAGTAAACATCGCCGTTGGGTCTGTCCGAAATAGGTACGCGCGTACCTATTTCGGACAGACCTTTTCCTGGCAAAGTGATACTGGAGTTTGGTATTAAAGAGTTTACTTTTTCAACAATCCCAGAATTTCGATTTTGATCTAATCCCTTCCTGTGCTAATATTAGCATGAGAGATAGGGCTGATTTCGTTTTAGATAAACTAGCCGGTTTATTCCTCCTACCACTAGATTAGGGGGAGGATAAAAGGCTAAGTTTTAATCGTAGCTCTTGTCGTCGATGTGCAGTAAGGTAAAAATGCCCGGGGATCGACGACAAAGAATATGGCTAAATAAGCGGGCTAAGAAGAGAAGTGCTGATTTGGTTAATTTTGGTCAATGGCTGTAATGGCTTATTTAATGCTGGTGAAATGG # Right flank : GCTCAACAGTGATCTTGCGCTCAGAAAACCCAAATTATCGTTATTAGCTTACCTATAAGTGACCTTTTCTCGATAAAACGGACACTCCAGAGTTAGGGATTCTCTCAGAATCGCAAGATTGCTTCTTTTTTCATCTCAGGTAAATACTCCAAGCTGCTCTCTCAGGGGCCAGCCCCTGAAACCCCGCCCCCGCCGGGTGGCAGAAGAACGGTCTTTAAACTGTTCTGAGGTATAAGGGTCTTGGCCATGTTAGCCAATCAAGGGCAAGGACTTCGTCTCGGCTGACGCCGCCCCTTGACAAGCATCTACCGAGTTGATAATCAGCATCACAGATAAATTTTTCCCGGCAATGGTGTCAGGTGTGACACCATTGCCGGGAAATTCTATATTAAGGGATTAAATATGGAGAATAAAAGCAGGCTATGATATACTGTTTCCATACAATGGATATTAAGGTCGATAGTGATAGTTTCATAACGGAGGATGATCACGATGTCAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 5 3137322-3133906 **** Predicted by CRISPRDetect 2.4 *** >NZ_LK996017.1 Desulfitobacterium hafniense strain PCE-S Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3137321 30 100.0 35 .............................. TCGAATTATGGACGGCCAGTAAAGAGGGCTTTTTT 3137256 30 100.0 36 .............................. ACTTAAGCTCTCCTATCTCATGGGCATGGGTGCCTT 3137190 30 100.0 36 .............................. TTGGGGACTTGGGGCGGGGAGGCCTCCAAACGCTGC 3137124 30 100.0 34 .............................. TCTCTTTTTTTCAATTCATCAAAGGTGTGCTCAA 3137060 30 100.0 35 .............................. AATAGCTGCGTCAATACGCTGCTTAGTGGATGTAT 3136995 30 100.0 38 .............................. AAGTTCTTACAGTTCCTACTGGTGAACCGTTTTTGTAA 3136927 30 100.0 35 .............................. ATCCCATAGGCAATCGGTATCCCAAAAATCAGAAA 3136862 30 100.0 36 .............................. TCTGCCCAACCTGTAAAAGAGCGTTTCCCGAGGAAG 3136796 30 100.0 37 .............................. ATGGAGGAAAGGCTTTTTTGGTTGAGGTCACGGACGG 3136729 30 100.0 37 .............................. GGTAGCTATCTCTCTTCGCCTGTTGGGCGGACATAGT 3136662 30 100.0 38 .............................. TGAGGAATTTAATCACGCTAATTGCATTGGCTGCCTGA 3136594 30 100.0 35 .............................. CATCAAATCGCGGATGAGATGGCCAAGTATTGTAT 3136529 30 100.0 34 .............................. ATCGGCTCCTGACATGCCGCCCCATTTCTTGCCC 3136465 30 100.0 35 .............................. TCCAGTATGACAAGGCCATCAGAGACCCAGGCTTC 3136400 30 100.0 38 .............................. CTCCAAAGTAGCTAGCTACCTTCTGCACTTTATCGATA 3136332 30 100.0 38 .............................. CCCAAATCGCTTTAGAGATTGGAGCTCGACCAGAGGAG 3136264 30 100.0 40 .............................. ATTCCGATTCAACCGAACGCCGTATCCTTCCCTCCTCCGA 3136194 30 100.0 35 .............................. TAACAATTGTATTTTGACCAACTCCACAATTGGCT 3136129 30 100.0 35 .............................. CTCTATGTATCCTGCATGGAGTAATTGTCTTTTAT 3136064 30 100.0 37 .............................. ATCCCTTCTAGTGAGGTTAAATTCCCGCCGTCTACTA 3135997 30 100.0 39 .............................. ATGTTTTCTGGAAGTCCTGCATCTCTAAAGCTATAGATA 3135928 30 100.0 36 .............................. GATGCACCGGAATAAGTATATTCTTTTAATTCCTCA 3135862 30 100.0 38 .............................. ATCATTTTGTTTACTCCTTCCTTCTCCGGCTTTATATG 3135794 30 100.0 36 .............................. TGTTCTAAGTTGACTAAATCACTCGGATATAAGCAG 3135728 30 100.0 36 .............................. AATTAAAAGATATTACGCGGAAACAGTATCAGGATG 3135662 30 100.0 38 .............................. ATGACCGGATGCAGGGTGAAGAATCTATGTCTGACAGA 3135594 30 100.0 35 .............................. CTTTTTTCTACATCATCTATTTTTCCTTCTATGCT 3135529 30 100.0 35 .............................. ATCTAATTTGTGGAATTTGTAATGGTTCAGGAGAT 3135464 30 100.0 36 .............................. GTAACGTATGACGTTCCTTTTTCTCGGCATTGTCCA 3135398 30 100.0 35 .............................. CAAAAAGCAATGCAGTAAAAAGGGAATGGAATTTG 3135333 30 100.0 34 .............................. GACGGTTGGTTGTAAATTAGATTGAATTCCTCTG 3135269 30 100.0 35 .............................. AACATGTGAACTAATATTTTTCATATATTATTTTG 3135204 30 100.0 36 .............................. AGACTAGAAAAGCAATCCGTCAATTAGAAGAAGCGA 3135138 30 100.0 37 .............................. TAAATCAGAGGATAATGGTCTGACGTGGTCAATGTTG 3135071 30 100.0 36 .............................. ATGTTCAGGATAACCAGGTACTTCGGTGAGCCTATT 3135005 30 100.0 37 .............................. TATTCGTTGTACTGCTGCCGGTATCGGTAGCTATCGC 3134938 30 100.0 35 .............................. AGGAGATTTTAATTCTGCCCCTTCTTTCATGGGTT 3134873 30 100.0 36 .............................. ATCTTTCGGCATGTTTTGAATAGGGCAAAGTATACA 3134807 30 100.0 39 .............................. GTGATCGCGCCCTCACGGTGGTGCATTGGTTCTGGTACC 3134738 30 100.0 39 .............................. CTCATTTTCCAAGCTTGCTTAATCTCGTCCAGCGTCATA 3134669 30 100.0 35 .............................. CCGCAGAGGTCAATGGGGCTGGAAAGTCTCTATAC 3134604 30 100.0 37 .............................. TGTTTCGATACTCGATAACGCCGGCTTCCTGATCATC 3134537 30 100.0 38 .............................. ATGTCCACGATTGACAACTTATCGCCAACCATCCCTAC 3134469 30 100.0 35 .............................. GAGCTTTTGGGCCCTACCTTACAAGTCAGAACATT 3134404 30 100.0 35 .............................. CGGAAAATCGCGTCCATAAACGCCAGATTAGCCGA 3134339 30 100.0 37 .............................. TCAAGACCCAGCGCGGTTCGTCTCAATGTGTTCGGAA 3134272 30 100.0 38 .............................. GGGAATGGCCAAAAACGACCTTCAGATGAATGAAGATG 3134204 30 100.0 35 .............................. AACAGCTCAAGCAGATGAGTCGCTATACTGAAGCA 3134139 30 100.0 38 .............................. TCTTTGTGCCCGGCACTCCAAGCGTAACTAGTGTAACC 3134071 30 100.0 37 .............................. ATGCGGATATTAAATTCTTTCATGGCATCGGCAACTT 3134004 30 100.0 39 .............................. TCCAGAATTTGAATTGTTTTTTCTAATTCAAATTTTAGT 3133935 30 93.3 0 ...C......................T... | ========== ====== ====== ====== ============================== ======================================== ================== 52 30 99.9 36 GTTGTTAGCTTACCTATAAGGAATTGAAAC # Left flank : TAAGAATTTAAAGCTTGGTACGGGGAGGCTATACGTGGCTGGCAGGAGGTCCAATCCCTAATCCAGCCATCTTCTGTCATTTAACCCAGAGCGGATGCGATAGCATGGAGAGGCTTTGAGGAGAACTAGTTAGTGAAGGTATAAAAATGGAGAGGGAGCCAACCAAGGTGATGGTGAGTGCTTGAAGGATTTTATCTTTGCTTTCAGCGTTCTATATGCTAACATGATCAGGAAGGGTAGAAATTGATAGCCTGATGTCGAAGTGGGTTAGATAGGACTAGTAAGTCTATACAATAGTAAAAAAGGCGATAAATATAAAAATTACGAGTTATTCAGAGTCAGGATTTCAGCATGTATTTTGTCGTCGATGTGCAGTAAGGTAAAAACCCCTGGAGACCGACGACAAAGAATAGGGCCAAGTAAGCGGATTGAGGAGCAAAGATCAGTTTGGATAAATTCGGGTGCTTGCCGAAGATGCTGATTTAATGCGGGTAAAATGG # Right flank : TGAGGTTGAAGGTCACAAATTTATTGAGTGCTGCTAAAGACAATTTAAAATAGAAAACTTTCTTAGCTTAGTATAGAATTAAAACAACTTAAGTAATAAGAATACTGCTTTGGGGGTGAAAAATTTGAAAAAGATGTTTTTAGCAGCTTCGGCTCTGGCATTGAGTTTGGCTTTGGTCGGCTGTAGTAATGTGAAAGTAAGTGTGGAAGAAAAGGATCAAAGTACGTTATCCGTAGAAAGCATACAGTTGGAACGAAAAATTATTATCAGAAACTCCATAGCCGATCCTTTGCCCGAAGAAGCTCAAAAAGCCCTGTCTCTGCCGGATAAAGGTGGTCCACAACGACTGCCCAATGTTGATTTAAGCACTCCAATCATAATTACTAAAATGCCTTATCCTGAAAGACCCCAGCCATAGCAATAACAGCGGCAGCGGCGGAATGGAGATTAGTATGAAAGAATTGTACATGAATCACTTTGCAGATCACTACGGCTTAGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //