Array 1 139926-141486 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035946.1 Campylobacter canadensis strain LMG 24001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 139926 37 100.0 35 ..................................... ATTGGCATCGTTGGCACCGATTCAGCACTCGAAAC 139998 37 100.0 35 ..................................... TCTTCTAAAATTGAAGTTTCAAGTAGCTTCATCTC 140070 37 100.0 35 ..................................... CAAAATTTGCGATATAATGACGATAATGAACTGAA 140142 37 100.0 35 ..................................... CGATAAACCGAATTGTCTGCATCTTTAAATGCTAG 140214 37 100.0 35 ..................................... TATGAAGTTGGAAAAAGATGTTTAATTCGTACTAC 140286 37 100.0 36 ..................................... ATCAACGTTAATTAAATATTCGTTATTAACATATGA 140359 37 100.0 36 ..................................... CATCCTTTCTTCAAGTGGTTTATCTATTACCACAAC 140432 37 100.0 35 ..................................... AATTCTTCATTAGAGAAATCAGCATTTAAAGTATT 140504 37 100.0 35 ..................................... CGAGCATTCTGACTGTCTTCAAAACCCCAATCTTT 140576 37 100.0 35 ..................................... CAGCAAATCGTGGCTGGTGGTGTGCTAGAGCTTGA 140648 37 100.0 36 ..................................... GTTTTCTTTTAAAAATTTTGGTAAGCTTTTTTTGTA 140721 37 100.0 37 ..................................... TAAGTGCTTACATAACTTTTTGGAAAAATATTTTTAA 140795 37 100.0 36 ..................................... CATCCTTTCTTCAAGTGGTTTATCTATTACCACAAC 140868 37 100.0 36 ..................................... CAAGATTTAATCTTGTTAATTTTTGCAGCGACTTTA 140941 37 100.0 35 ..................................... AACAAGGAACATAAGTCTCTTGTAGTTAGCAAATC 141013 37 100.0 35 ..................................... AAAGCTATTGGTGGTGGCATTCCTAATCCTATAAA 141085 37 100.0 36 ..................................... AGCTATTAATAAACAAATTAATATTAAAAAAGATAT 141158 37 100.0 36 ..................................... TTCTTTACTTCTAGTTTCGCCAACAATAATTCTGTC 141231 37 100.0 36 ..................................... CAATATCAAAGAAGACAAGGCAATGTTTGTTTGTGT 141304 37 100.0 35 ..................................... TAGCCAATTATAGAGACTACTTCTTTAGCTGTTTG 141376 37 100.0 37 ..................................... ATTAAAACTCCGCATTCAAGACCAGCGTGAATGCTTG 141450 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 22 37 100.0 36 GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG # Left flank : CAGCTCCTTTTAGTGGAGTTAGTATAGATAAAAGCTTATTTACCCCAAGAGCTAATTTAAGTAAAAGTGCAAATATTATTAAAGCTGCTTTTTATTATTATGATAATAAAGCAAAAATTAAAAAAACTAGTACGATTTATTTTAATGAATTTGGTAATTTATCAAGTAATATATATGATTTTAATAGTATTCAGCACTATTATATAAAACTTTCAAGCAAGGATGATTATATTTGCATAAAGCTTAATTACATAGGTTTTTCTAAAATAGTAGATAAAAGCGAATGTATTAATTTTAATTAAGCTAATTTAGATTGTTTTTAATTTATTTAACACACTGCTTAATCCGTTCTTTAATGTAAAAATACTACTTGCTAAAGAATATAGCTTTTTGCCAAACTAACAATTAAGACTTACAATAATCAATATATTTTAGATAAATAATTTGGTTAGAGAAATTAAAGAAGTGCAGTAAGCAAAAGATAAATAAGAAGAAATTGT # Right flank : GAGCTAGATAAACTTGTCTAGCTTGTAAGGATTTGAGCTAACTTAAAGTTTGCTTATTTTTCCACTTTGAAAATTTCGGCAAAAAACAGCCGTTTTGTGGAAAAATAAGAAAAATTTAAGCTTATGGTTAAGAATTTTAGCCTAATATATCAACTCAAACCTAATTCTAGCAAAATATTTAAGAGTTTGAAATCACCACAAGGTTGGTAAAATATCGGGCAACTGGCTTAGCCACCCCGATAAATCTTATTAGTTAATCTTTGCTAAATAAAATTCCATTAAAACATAAATTTAGGAGAAATCATGAAAACTCACATTAGTATAGATATGGGAGCGAAAAATAATGGGGTGTTTTTAGCTCATACAAAAGATGGCAAGATTATAGATAAAACTGCTACGAATTATATCTTTGAACCATCTTCTATAAATTTTTTAAAAAAAGATAGAACCAAGAAAAGACATCAAAGAAGAGGTTTTAAAAGAACAAGACTAGCTAGAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 534452-535327 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035946.1 Campylobacter canadensis strain LMG 24001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 534452 36 100.0 35 .................................... TAAATAACTTTCTAATAATTGCAATTCACTAATTA 534523 36 100.0 37 .................................... TATGGTGTATCGTTTACAACGATACATACTCCATAAG 534596 36 100.0 35 .................................... CTCTTGTTTAAGACAACAAAAGCAAATGAACAAAT 534667 36 100.0 33 .................................... TCATAACCTAAACTATTAAAATAAAAATCAGAG 534736 36 100.0 33 .................................... AAAAAATATTTGGAATTCATTTTTTACATTTAC 534805 36 100.0 35 .................................... ACATTGTTCGCTTCGTCGTTCTCCAGCCTTGAAAA 534876 36 100.0 34 .................................... TGAAATCTTTTTTAAGACCGATATAGTGACTTGT 534946 36 100.0 32 .................................... TTATCTAACACTTTGCTGAAAAGTTCTTGTAA 535014 36 100.0 33 .................................... AACATTATTTCTTTTTTTATGAAATCTTTTTTT 535083 36 100.0 31 .................................... ATTTATATTTAAATCAGCTTTGAAAATATAA 535150 36 100.0 33 .................................... GGCATTCGCCACCACAGAAATATATTTGTTTCC 535219 36 100.0 37 .................................... TTTGATAAACCTATACCTTTTATCACTTTGTCTACTT 535292 36 91.7 0 ..C......T...A...................... | ========== ====== ====== ====== ==================================== ===================================== ================== 13 36 99.4 34 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : TAAAAGCTATCTTTAAGAAAATGATTTATTTTTGATAATTCACCCTTATTTGTCTGTGCTTTGCCAATTACTACTTTAAAATATTTATCTTTATAACTTTGTTTAAAATGATAGCTTTTGCTATTAATAAAAGAACTTTTTAATTTGCATTTACCACATTTTAAGCTTAATTTATGCTGAATTTAAGCTAAAACAAAGTGAATTTTGCTAATTATTATAATTTAATATTTACATTTGCTACTTTTTTGCTTTTTGTATTTATAAAAGTATTAATAAATAATGCCTTTTAATATTAAAATAATCTTAAAACAAGCAAATGATTAAAAAATTAAAATTCTTAATAGCAAAATAGATATTTAAAGCTTATATTTTTTAATTTCCTTAGCATTTGCTAATATTTGTTTTTATTAAATCTTAAAATATTATTTTACAGATTAATTAAAAATAATTATAATATCTTTTTTATGAGTTATTTTACTTAACATTGTTAAAAATAATGG # Right flank : CATTCGCCAAATTATTTTCAAAACTTTCATCAGCTTTTGTGCAAGAAAATTACTATTTATTAGATTAGTAAAAAGAAGTAGCAAAAATGATTAAGCTATCTAAATACGAAAACGCAAGTAAAAATGAGATTGCAAAAGTAATTGATAAATATTTTGCTAAACTTAAAGAATAAAAAAATCAAAAAAACACAAAAAGCTATAAAGCAATTACAAAAGTTTTTAATCAAAGCTTGAAAGCTAACAAAACTAAAAATTATAAGTGGCTAAAAGAATATTAAAAGTAATGAATTTATAGAAGCACTAAAAGAAGCTGAAGAATTAAAATAGCTTATTTGCGTGAAGAAGTGCAGTATTTAGAAGTTAAAGAATTTGTTAAGGAAAGTATGAAATGATAAAGCTAATTATTAAAGAACAATAGCATATAAAATAGCTTTAAAAAAATTAGGTAAATATAATAAAAAACCAGCATACAAAATCATTCATTGTTTAGCTAATGCTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 3 1320272-1319954 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035946.1 Campylobacter canadensis strain LMG 24001 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1320271 36 100.0 37 .................................... TTTTACCTGCCTCAACGGCGTATTGTGTGGCGATGAA 1320198 36 100.0 33 .................................... CCATAAGGCTTTCATATTAAAACTAACCTCATT 1320129 36 100.0 34 .................................... TTGTAATCAGGCTTAAATTCTTCATGGTATTGCT 1320059 36 100.0 35 .................................... CGCACGGCGTGTGTCCTTTATTATCCACTCCCCTT 1319988 35 91.7 0 ...............................-..GG | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 98.3 35 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : CTAATATGTAAAACTTCTTTTAAGCTTTTTTGCTTTTGTAATTTTTGTAATGATTGTTGATAATTTTCTTGCATTTTATCCCTTTTACAACTTTTTAAAACAATAAAAAATACTTTTATATTAACATATTTAAGATTTACATATTTGCATTTACCACCTTTTAAGCTTAATTTATGCTGAATTTAAGCTAAAACAAAGTGAATTTTGCTAATTATTATAATTTAATATTTACATTTGCTACTTTTTTGCTTTTTGTATTTATAAAAGTATTAATAAATAACACTTTTTAATATTAAAATAATCTTAAAACAAGCAAATGATTAAAAAATTAAAATTCTTAATAGCAAAATAGATATTTAAAGCTTATATTTTTTAATTTCCTTAGCATTTGCTAATATTTGTTTTTATTAAATCTTAAAATATTATTTTACAGATTAATTAAAAATAATTATAATATCTTTTTTATGAGTTATTTTACTTAACATTGTTAAAAATAATGG # Right flank : TTCCTGTTACATTTGGGATATAATATTTTCTTAAAGCTATTTAAATGATGTTATTAAAAGAATTATTTATTTAAAGTTTTTAAAAGCTTAATATGCCTTCTATTAAAATATAAAAAGTAATAAATATGATAAAAAGTTATAAGCAAAATCACCACACTTATTTTTTAGTTTCTAATATTATTAGCACATTTATTAATTTTTATATTTATAAATAATTAAAAAATTAGGCAACTTACCTTAGATAAGAGTTTTTAACATTTTATTACTTTTATATATAGCTTTGAAAGTTAGTAACAAAAAACAAATACGAATAAGGATTAATATTGTAAAAAAATTTAATTTTTTTTATTAATACTGTGTCTTTATTAACCGTGGGGGGGGGTATAATGATATGAAATATAAAGAAAGGAGTAAAAGATGGATAAAGCAAATGCAAACCATAAAGCTAATCAAGCAAATGCAAACAAAGGTAGTGCTGGACAAAATAAAGCACATTCTCA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-86.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 4 1322523-1322913 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035946.1 Campylobacter canadensis strain LMG 24001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1322523 36 100.0 33 .................................... GACAACTTAATATTTTTTAGCAGCTGATCTACC 1322592 36 97.2 36 ............A....................... ATCAGAAGGCTTCATTTCATATCTATTATAACTTTT 1322664 36 97.2 36 ............A....................... TTTTTGTAGATGGTATCTACTCATAAATGCTTTTTT 1322736 36 100.0 35 .................................... ATAAGCCTTGTTTTGCTTTAGCTATTTTTTTATTC 1322807 36 100.0 35 .................................... TGCAGTCTGCCATTGGCATTCCGCACTCGTCTAAT 1322878 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 98.6 35 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : TAAAAAGTTTATATAAACAAATAGCTTTTTTGCTTTTGCAATTTTTGTAATGATTGTTGATAATTTTCTTGCATTTTATCCCTTTTACAACTTTTTAAAACAATAAAAAATACTTTTATATTAACATATTTAAGATTTACATATTTGCATTTACCACCTTTTAAGCTTAATTTATGCTGAATTTAAGCTAAAACAAAGTGAATTTTGCTAATTATTATAATTTAATATTTACATTTGCTATTTTTTTGCTTTTTGTATTTATAAAAGTATTAATAAATAACGCTTTTTAATATTAAAATAATCTTAAAACAAGCAAATGATTAAAAATTTAAAATTCTTAATAGCAAAATAGATATTTAAAGCTTATATTTTTTAATTTCCTTAGCATTTGCTAATATTTGTTTTTATTAAATCTTAAAATATTATTTTACAGATTAATTAAAAATAATTATAATATCTTTTTTATGAGTTATTTTACTTAACATTGTTAAAAATAATGG # Right flank : ACTTAGAATACTTTGGGATAAGATAAAAGATATTAAAAATCCTATGTCGCACTGTACTACTGAAAATATCAAATTTGATGTAAATAAAGAACTTCAAAGTTGCTTAGATGTGTATCAAAATTATATTATAAAAAATGATGTTTTAGCTAAGTAGTTTTAAGGCTTTTGCCCTAGCCTACTTAACTTTTTGTATTAAATAGTTATTATAAACTATATTATCTTTAAAACTCCCTAAATTTTATATGCTTAAAAATGCTTTGTTTTACACCGTTTTCATCTTTTAAAACCTCTCTTTTTGTGGTGGCATAAACGGGTTTTAATGATTTTGCTTTAGCATAATTTATAAGCTTAAAGCATAATCCAAAATCACCGCTAATAAGCAAAAAATCACCTTTTTTAGTATTTTTATCAATGTATTCATAAAAATCCTTTGCGTATTCATCTAAGCTATCAAGGCTGGGCGGAACATTTGAAAACCTAGTTTGTAAATCCTTTGGCAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : GTTTAAGAAGATAGCCCCGCTTTAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //