Array 1 1249277-1250630 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT669940.1 Parabacteroides timonensis strain Marseille-P3236T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1249277 47 100.0 30 ............................................... CAAGAGAGATCGTGTTAACGCCTGCATCCG 1249354 47 100.0 30 ............................................... GAAATGCGGCTCATATAATCTTTCCCGGAG 1249431 47 100.0 30 ............................................... AAAAGAAACAAGCGAAATTTAATACAAAAT 1249508 47 100.0 30 ............................................... CGATTGAAGGCATTCCCAGAAGCGAAAGCA 1249585 47 100.0 30 ............................................... ATTGCGACCTGTAATAACTACCCACTTTGA 1249662 47 100.0 30 ............................................... CGCCGGCGAGTTGAAATGTCCGCCATTTGT 1249739 47 100.0 30 ............................................... TAACGCGAGCCATTGTTTGTTTTACTTCCT 1249816 47 100.0 29 ............................................... TTGGAATAACCATATCTATTATATAAGGC 1249892 47 100.0 30 ............................................... TAAGTTCAGTTGTTGCGTTAATTTCAGCCT 1249969 47 100.0 30 ............................................... AAAGATAAACACGCTCCCCTCAGATATATC 1250046 47 100.0 30 ............................................... AAAGCATGTTCAGAACGTCTTCTGAAGCGA 1250123 47 100.0 30 ............................................... GTACTGATTTATCCGTATAGTCGACACCGG 1250200 47 100.0 30 ............................................... GCTTTATAATTCGTTAACAGTTTAGTCTTT 1250277 47 100.0 29 ............................................... TTATTGATGCAGCAAGTGTACTTTTAGCG 1250353 47 100.0 30 ............................................... GCGAACTGTTACTTCCTGTACCCTTGATTA 1250430 47 100.0 30 ............................................... GGTGCACCCGAACCACACCACAGACCCGGC 1250507 47 100.0 30 ............................................... TATCACGGAATAACATAGCCATTGGCATAA 1250584 47 95.7 0 ...................................A..........G | ========== ====== ====== ====== =============================================== ============================== ================== 18 47 99.8 30 GCTGTATTCAATATGACAAAGATATAAGTTTGAAAGCAAATCACAAC # Left flank : GTCTTTATATAAATGTTTTAGTGGTGGATTGCGCCGTATCTCATATCCGGAAAGATAGTATGAATCGATTTAGTGAATATCGCATTATGTGGGTACTTGTATTTTTTGACCTGCCAACTGATACGAAGAAAAATAAGAAGGCTTATACGGATTTCAGAAAGAATCTGCAGAAGGATGGCTTTACTATGTTTCAGTTTTCAATTTATGTACGTCATTGTGCAAGTAGTGAAAATGCAGAGGTTCATATAAAACGTGTAAAGTCTTTTCTTCCGGAGTATGGTCAGGTTGGTCTTCTTTGTATAACGGATAAACAGTTTGCTAATATTGAACTTTTTTATGGGAAAAAGATTCATGGAGTAAGTGCTCCAGGTCAACAATTGGAACTTTTCTAAAATAAAAAATCTCGTCTTTATGGCGAGATTTTTTATTTGAATACAGTAGTTTTTTATTTCCTGCATTTGCTTATAAGTTATTGAATAATAGTTGCTTGTCGATGTTGT # Right flank : GTATCGATCTTATAATTGTTGTTTATAAAAACTCAGACTATTTGAATCCTTTTAGCGGCCTCGGTTGTGAAATCCTTAAACAACTGACTATTGCAGCGACAATAGCAAATCCGGTAGCTAAATATAGACAAGCCTGTGTACTGTTGTTGGGAACTAAATTGAATATCATGGCAACCAGTGTCGCTCCCAGTGTTTGTCCCAGTAGACGGGCGGTGCCCAGCATCCCGCTTGCTCCGCCACTTCGGTTGGATGGGGCGGAGGAGATGATAGTGCTGTTGTTGGGTGTCTGGAATAAGCCGAAGCCGGCTCCACAAATAAACAGGCGCCATACTATATCCATATTTGTCGGATTTTCAGGCAGTATGGCGAGAAGGAAAAGACCGGCTGCAAATACGGTCATGCCGATACCTCCTAATATACCTGCATGGATACGTTCTACCAACCGACCCGCAAGGGGAGCCATGATCATGGTGGCCAACGGCCAGGGTGTCAGAAGTAAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTATTCAATATGACAAAGATATAAGTTTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 2371976-2368785 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT669941.1 Parabacteroides timonensis strain Marseille-P3236T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2371975 29 100.0 34 ............................. CGAGTTGAAGGGAAAACGTATCTAACCCATTGAA 2371912 29 100.0 37 ............................. TATCTGAGCGACATTTATAAAAAAAACGAACGTCCGG 2371846 29 100.0 35 ............................. TCGGGAACAGCCTCTTTCAGTGCATCCAAAGTATC 2371782 29 100.0 35 ............................. AATCTCGTTTAATTCGCCTTTAAAACTGAACTGAA 2371718 29 100.0 36 ............................. TATTCAAGATGTGCCCCATTCCGGAATTGCTCCATG 2371653 29 100.0 36 ............................. CGATATATGGATTAGTCCTGTCACAGGCAAGACCTT 2371588 29 100.0 34 ............................. AATGGATGACCTAAATTTGTAATGCATCAAATAA 2371525 29 100.0 36 ............................. GTGCCCAATGGCTACTACAACACTTAGGGCATCCCG 2371460 29 100.0 36 ............................. TGACGATTACAGTTGAATCTTTGATTACTGTCGAAT 2371395 29 100.0 35 ............................. GTGAAAAGCAGAGCGAAGATGAAAATTGGTATTTA 2371331 29 100.0 36 ............................. ATGTCTATACAATATTATGGAGATGAAAATATATAT 2371266 29 100.0 35 ............................. CATATACACGCTGTTTGTCTGTTGTCTTTCGAGAT 2371202 29 100.0 36 ............................. ACGGAAACTATTTGAATCTCTTTCCCGGGCCGCGTC 2371137 29 100.0 36 ............................. GGAATTTCGTCGTATTCTGACGCGTATTCCAAATCA 2371072 29 100.0 35 ............................. CCAGTATTTGCAGGAACCGATGTTCTTCCCGCTTC 2371008 29 100.0 34 ............................. GTCAATAGACTGGGGCCTTTCGGCATTTATATAT 2370945 29 100.0 35 ............................. ACACGTATCAGTGTCCCCCCTGCTTCTTTTGATAA 2370881 29 100.0 36 ............................. TCACTAAATAGATCCGAATACCGACTGTTGAATTGG 2370816 29 100.0 38 ............................. ATTGGTTTGCCGGGATGGTCATTGAGTTCTTTCGTGAC 2370749 29 100.0 35 ............................. ATGGTTGGAAATAGGGGGGAAGATTGTACCTGGTG 2370685 29 100.0 34 ............................. AGGCAGAAATGTCCCTGGCTCCACAGATGTACAA 2370622 29 100.0 37 ............................. GTTGTCTGGGGAGATCAGAAAACCGTAAAAAGCGATG 2370556 29 100.0 36 ............................. GTTCCTTCAGTCTGGCATGTATGTTTTCAAAATAAG 2370491 29 100.0 34 ............................. AGCTGAAAAGACCGGCATTGAAATATTCACAAAT 2370428 29 100.0 35 ............................. CCGCCTAGCCTTCCTCCACCTACTTCCTGCCAGTT 2370364 29 100.0 34 ............................. CTTGGTATATATAACTCATCCCGGTATCAGAGAA 2370301 29 100.0 35 ............................. TACGTTTTAGCAGCTGCTGCAGTTGCTGCATTAGG 2370237 29 100.0 36 ............................. GGTTTACAACCTTAGCTATTCCGTTATAGAACTCCT 2370172 29 100.0 36 ............................. ATGGAGCCTCTAACCTAAAGGAATTAAACTTTATGC 2370107 29 100.0 36 ............................. TGTGCCAACTGCTACCGACACATCTTATATTGATAA 2370042 29 100.0 36 ............................. GAATTTACGCTTTAACTCCGGGAGCTCCTCGTATAA 2369977 29 100.0 35 ............................. GCTGTATGCCCTCCTGATAATGGGAATGTTGAATT 2369913 29 100.0 34 ............................. AGAAGAAAAAGAACGTATTCCAATTCCAGAAGAG 2369850 29 100.0 36 ............................. GATGCATTCGCTTTAGAGTATCTTGAAGTGAAAAAG 2369785 29 100.0 35 ............................. AAATTATGAATGGTTATTTCTTTCATCTTCTTTTA 2369721 29 100.0 34 ............................. GACCTTGACAAAATTCGTCTTATTGTCGAAAATG 2369658 29 100.0 35 ............................. GGCCTTCGCGCTCGAGAGCAACACGGCGCGGCCGT 2369594 29 100.0 37 ............................. GCACGAATAAAACCTTTGGATAATCCTTGAATAGATT 2369528 29 100.0 35 ............................. AATGAATTTTTCAAGCATACTCCAAAGCGTCGACT 2369464 29 100.0 36 ............................. CATCAACAAGTAACGAACCTCCTTATTAATCGACTA 2369399 29 100.0 35 ............................. ATTGAAACCATGCGGTAATATTACTAGCTAGAGCT 2369335 29 100.0 37 ............................. GATCAATGCAGGACTCCCCGTTTAATTCCTTCCAGGT 2369269 29 100.0 34 ............................. ACAAATTCATATCGTATCCGCGAATATACAAAAT 2369206 29 100.0 36 ............................. AGAAAATTGGCACTGGTAAAAGGGTTCATTCCGAAA 2369141 29 100.0 37 ............................. CGCTGTTTGATATTTAAAAGAGCCTTCTGGTGATTGA 2369075 29 96.6 36 .....................G....... TCTGATAGTAATGCCGGCAGGGTAATACTGTATAAT 2369010 29 100.0 36 ............................. GGGTTTCAATGGTTCCAATCAACTGCTCGATAGGGA 2368945 29 100.0 36 ............................. ATGCAAGTTGGTTCGTTAGGTAACAGATCTTTATCC 2368880 29 100.0 34 ............................. TTCATAGAAATGCCTTATATGTGTTTGTTCCCTG 2368817 29 96.6 0 ............................A | TT,TT [2368789,2368792] ========== ====== ====== ====== ============================= ====================================== ================== 50 29 99.9 35 GTATTAATTGAACTAACTAGAATAGAAAT # Left flank : CTTTTAAAATGTATTGGTAATGTATGTGATCTTAGTTTATGATTGTGGAGAAAAACGGGTTGCGAAGATGTTAAAACTTTGTCGACGTTATTTGAACTGGATCCAGAATTCTGTCTTTGAAGGTGAGATCTCCGAAGTTCGTCTAAAGGAATTGATAATGCAGGCAGAAGCCTTTATGGATAAGACTTGCGATAGTATCGTTATTTTTAAGAATGCTTCAAAAGTGACAATGGATAAACAGATTATAGGTAAAGAACGTAGTTCTATTGATATATTCCTTTAGTTTTTAATATCTGTCGATCACATGACCTTTGAAGATTTCTATCGCTTAAAACATTAAAGAAGATCTTTGACTTGTTGATTTATAGTCTTTTATCTAATATGTCGACCTCCAAGGTTTTTTATATTATTGGAGGTCGACATATTTTATCTCAAGAAATATGTATTTTTTACTTTAGAACTTGTTGATATATAAATCTTTGTGATTTTTAATAGATAAG # Right flank : TAAAAAGTTAAGTCATAATTTAAAATATTGGCTTTCCAGACTAAATCGTGCCTCTCCACCGAATTTTTGTATCTTTGCCCCTCAAAGTAAAGTACACAAGGCAATATGATCAGTTATTTACAGATAGACGGACTGACCAAGAGCTTCGGCGATTTGGTTCTTTTTGAGGATATTACATTTGGTATTGCACAAGGTCAGAAAGTGGGCCTTATTGCAAAGAACGGTACAGGTAAAACAACTTTACTGAATATCATTGCCGGAAAGGAGGATTATGATAATGGGGCGGTTGTGTTTCGCAACGACCTGCGTGTCGGTTATCTGGAGCAGACACCTGTTTATCCGGAAGGGTTGACTGTTCTGCAAGCCTGTTTCTATTCTCCGAACGAGACGGTTCGTCTGATTGCCGAGTATGAAGAAGTGATGGCGAGCGATGATCATTCCAACCTGCAGGATATCCTGATGCGTATGGATAACCTGAAAGCCTGGGATTATGAACAACG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGAACTAACTAGAATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //