Array 1 624-14 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKYI02000055.1 Myxococcus xanthus DZ2 contig_000055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 623 36 97.2 37 ...T................................ TGCTGACGCACCACGGCAAGCGGATGGGGCGCTGTCA 550 36 100.0 39 .................................... GTTTCCGACGCGCACGCGCTTGCGGTGTCCGTCCGGGTC 475 36 100.0 35 .................................... AAGGCGTTGCGCGCCACCATCTGGCAGTGCATGCC 404 36 100.0 35 .................................... CCGTGGCGGCACACCTGTACGGTGCCAAGTCATGA 333 36 100.0 35 .................................... AATCCTCACTGTACGAACAGCCCGCGCTGCGTCCT 262 36 100.0 36 .................................... GCCTGATGCAGCGTGGATACACGCTGAAGCCGCCTG 190 36 100.0 33 .................................... GAGAAGGGTGTCAAGGCTAGCATTGAAGGCTTT 121 36 100.0 36 .................................... GAGGTCGCTGCCGCCCTGCGCGCCGTGGGCTTCCAG 49 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 99.7 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CGCGACCCCAAGCGGTGGCGGAAGGTGCATGCCCTGCTGAAGGGATACGGAGAGTGGCTGCAGCTCTCCGTGTTCCGCTGCTCGCTGACGGACCGGGACCGGGAGAAGCTGCGCTGGGAGCTGTCGCGGCGGATGGACGCCGTGGATACGTTGCTGGTGATTGGGCTGTGTGGCGGGTGCGTGGAGCGCGTGCGCGCCATCAACGCGAAGGAGGACTGGCCGGAGGAGCCCGCACCGTTCAAGGTGCTGTGAGACGGACGACAATCAAGCACCTCGCCGTGGCGGAGGCTCGCGATGGCGAAAGTGGCGGATTCCCTGTCGTTTCATGGGGGTGAGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGCCGAGTGGTTTCATGGGGTTGGCGATTCTGGGTAGGGCCTGGGATGGCCAACCTGGGGGAAGGAGGGGGAGGTGCTTGAAAGGGGTTTGTAAGGTGCCGGAATTGCTGGGGGATTCAGGCGGGCT # Right flank : CGCGTCTATCGCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 22800-22477 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKYI02000055.1 Myxococcus xanthus DZ2 contig_000055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 22799 35 100.0 35 ................................... CGCTTCTCCGTCCTTCTTCTTGTCGTCTGCCATTT 22729 35 100.0 40 ................................... TGTGGTCCAGTGGTCGCCCTTCACGCGGACGACGTCGGGC 22654 35 97.1 38 .....................C............. CAAGGCTGGTATCCGTGACGCGGAGCGCTTGGTACGCG 22581 35 94.3 33 ..C............................C... CTAGTCGGTTCCGCCATTCTGGTGTTGCCAGAC 22513 35 94.3 0 ...............................CT.. | CG [22509] ========== ====== ====== ====== =================================== ======================================== ================== 5 35 97.1 37 GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCA # Left flank : GGCGTTGAGCACCTCGCACTCGACGCGAGACGGCGCCAACCCACC # Right flank : CATCTGGAAGCTGCGAGGCCATCCTGCTTTCCAGCAAGGTCGCGCTCGCCGTACAGGGCCTCCATGAGCGAACATCAGGTCTACGAGTTCGTGGCGCTGGACCGGCCCTTGACGGCAAAGCAGCTGGTCGAACTCCGGGCCATATCGACGCGGGCCGAAATCACACCGACCCGGTTCTGGAACGAATACCACCGGGGTGGCTTGATGGCGGACCCAGCCCAGCTCCTCCTGCGCTACTTCGATGCGCACCTGTACCATTCGAACTGGGGCGACCGTTGGCTGATGCTGCGCCTGCCGCGTGAGGGGCTCGACATGAAGGCGCTCAAGGCCTGCTTTCCGGCACGAGGTCCATCAACGCTCACGGTGTCTGGGACCTCCGTGTTGCTCGACTTCCAGGTGAGGGATGAGGAGCCCCCGGACGAGGAATCTCCGCCCGCCTCGCTCGCGGCGCTGGTTCCGCTCCGGACCGAACTCCAGCGCGGAGACCTGCGCGGGGCCTA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 31058-31520 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKYI02000051.1 Myxococcus xanthus DZ2 contig_000051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 31058 36 100.0 34 .................................... GTCCGGCGCTTCAAAATCTCTTTCGACTCATGCA 31128 36 100.0 37 .................................... CCGTGGTGGGTGATGGCCCACGTCCACGGGCGCGCGA 31201 36 100.0 35 .................................... AGGTACTTCTCCAGGCTGCCGCGCATGCCCGTCAG 31272 36 100.0 35 .................................... GGCCTGATGCGCTCAGGCGGGTGGCTAGATGGATG 31343 36 100.0 35 .................................... ACGTGGCACGCGGACAACCTGCGCGTGCATGCCAA 31414 36 100.0 35 .................................... GCCGCGCTCCAGCATCGTGACGACGAGCACGTGGT 31485 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 100.0 35 GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : GCTGGTGCGTATCGCCGGGAAGCGGGTGGTGGGTTACGCGCTCGAGCTGCATGGCGTTTCTGGAGAGGACTCGTTGCGAGTGCAGGCACAAGGCCTGGGCGGGCGCCGCCACATGGGGTGTGGCTTGTTTCTTCCGCCGCGTCCCGTGGTGCGGGGCGTTGTGCCGCAGCTCGGGGAACTCGCGCGGGCCGCGTGAAGGCTTGCCGGTGGAGCAGGGGCCTTGCAGGAACGTAGGACCGGGGGCTGTGCGGTGCGTGACATTCATGCACCTCGCCGTGGTGGAGGCCTGTGCCGGTGAAATCGTTGAAATCCTCAGCGAGTTCATGGGGTTGGGGCTCTTTGACAGGTGAATAGGTGCATGATTTATGAAAAACCGAGTGATTCCATGGGGTTTGGAATCTTGGGTAGGGCCTGGGAGGCGCAACCTGGGGCCGGGAGGGGGGAGGTGCTTGAAAAGACGGGAGTAAGTTGCCGGAACTGCTGGGAGATTCAGATGGGCT # Right flank : TC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 36-572 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKYI02000008.1 Myxococcus xanthus DZ2 contig_000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 36 36 97.2 37 ...........A........................ TACCCACCCATGCCGACCGTTATCAGCTCCCACATCT 109 36 100.0 38 .................................... CTCGATGCGATGGGTTCGAATCCGGGCGGTCCTGTGAC 183 36 100.0 33 .................................... TCCCGGGCCTGAGCTACACATCCGCGCTGGCAT 252 36 100.0 34 .................................... GTCAGCATCGCGTCCGGAAACTTGCCGAGCGCCT 322 36 100.0 35 .................................... CTTTACCTGCCGCGCCGACAACGACCTGCGGCGGC 393 36 100.0 35 .................................... CCTTGGTACGTGGAGTGCGGCATTGCAGCTCTCAT 464 36 100.0 37 .................................... CTGCCGCGTCCGCCCATGTTCTTGCTCTCCATGTTTC 537 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 99.0 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : AGGGCTGGGACCTGTATCTGGAGAAGACGCGCGTTG # Right flank : TCGCTGGTTGTTACGCCAGTCGTTGTTGGTGTGGCCGCACACACTATTTGAGTTGTGAATGACTGTTCTCGCGGACACTGATTGAGGGGCTCGCGAGGAGAGGTTCCGAAAATGCCATTACGGAGCCGCGCCACCGGAAATCACGCTCGTGATGGGAGTCAACTCATTGTCGCGACAGCAGTTTCCGCGAGAAGCGGAAATGATTGCTCCCATCCTGCGGTTCTCCGGTCGCGTCAGGGCTGCCCGAAGGGCACCGCCGGAGGCGGCCAAGCCCTTGACGCGACTGGGGAACCGTAGTCCCGAGGCTACCAACCAAGTGGCTCACCGGACCATCAACAAAGGTGCGCGGCAACACCTCGGGCGACAGCTGCAAGGTGGTATTGACGGAGATGCTCTGCGACATCAACAAGAAGTCATGCTGAACTCTCTCTTGCTCCCGTTTGATGCCCTACGCCATGAAAGAACTGCTCAAGTACATCAATGGATTCGAACCCGCATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1848-2463 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKYI02000008.1 Myxococcus xanthus DZ2 contig_000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1848 36 100.0 36 .................................... AACGCGACCTGCGGCGTCTCTTTGTATCCGTGCACC 1920 36 100.0 37 .................................... TCCCTGCGCGATAGGGCCGCGCGCGTGGTACCCTTCG 1993 36 100.0 40 .................................... AAAGGTGGGGCGTCCTCTCGCACCAGGTGCCCCGCGTGGG 2069 36 100.0 35 .................................... TCGACGGGGACGAAATGGGCTCACGCCTCTGGACG 2140 36 100.0 36 .................................... TGGAAGAAGACGGCCATCCGCCGGCTGATCAAGCTG 2212 36 100.0 38 .................................... ACATGGATGCCGCGCAGTGCCTGCATCGGCCCGAGCCC 2286 36 100.0 33 .................................... CCAGCGCATATCCCTCGTACCGCCCGAGGTTCG 2355 36 100.0 35 .................................... CTGAGCTGCGGGTGAAGGGGGCGTTGCAGGCCAAG 2426 36 94.4 0 .....A............................C. | CT [2458] ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 99.4 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : GCTGACTGTCCTGTTGTCCAGGCGGACCCAGAAGAGCCGTTCAAGAACGAGGACCATATCGTTCCCCTGTATGGTCCCTTGAAGGACATGCTCTTCCTGATGGCCTTCAGCAGGAAGCGGATGGCCCTTCTGGAGCATCGGCGACGGTTCCTCCCTTCACTCGTGCGCAGCGGAACGGGGAATGTCCGAATCGTGGCTCCCTCCTTGGTGGGAGCCATCGACGAGACGCTTCTCCAGCTCGGCTTCCAGACGCTGCCCTATACCAGCCCACTGACTCCGCTCTACGAGCGCGGTGACGCAGCCTTCTACGTCGACCGTTCTTCACAGGGAGGAGGACTGTCCGCCGAGTTGGCGGCACGAGATGAGCGAGAATTCGGGAGGCTGGTCGAAGTCATCCAGGATTCTACGACTCTTGTATAGTATTATCCGGTCAGGTGCACCAAGCGCGGTCGCCCCGTGCTGACGGATACGGGCGCCATTGCCATCCCAGAGGACGGCAA # Right flank : CTATCAGAAGATCTTCATTGTAGCCTGGGCCAGCCATGAACGCAGCGCCTCGCCTTCAACCCGGACGGGCGCGTTCTCGTGACCCAGATCAATCCAGGAGGCCTGGGTCGCCTGTAATCCGGAGGCGCCGCGGAGATCTGCCCCAGAAAGCCTCGCTCCATGAAGGACCGCGCCTTCCAGATGCGCATCTCGGAGATTCGCGGACGCGAGGTTGGCACTGACCAGGTAGGCGCCTTGAAGGTCCGCGCCTTGAAGGTCCGCGCCTTGAAGGTCTGCTTCGCCGAAGCTGGCTCGGAGCGCGTTCACCTGCGTCAGAATGGCCCCTCGAAGGAGCGCATAGTCCAGGTTGGCCTTTGAAAGCTGCGCTCTGGAGAGGCTGGCGCCGATGAAAGATGCGGACGCAAGGTTGGCGTGGGCGAGCTTCGTCCTGTCCAGGATGCATCCATCCAAGCGCGCCCCAGGAAGCGCTGCCTCCGATAGATCTCTCGACGACAGGTCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 278131-278449 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKYI02000008.1 Myxococcus xanthus DZ2 contig_000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 278131 37 100.0 33 ..................................... GGGCCCGAACACGCGGCGAGAGCCAGCGCCATC 278201 37 100.0 33 ..................................... GCTGGCACACGGGCGAGCCGGAACAGCTCCAGC 278271 37 100.0 34 ..................................... CGGATGGTCCACAGGACCACCTGGCGATCATCGT 278342 37 100.0 34 ..................................... CGAAGGGTTGAAGGCCACGAGTGCGAGTGGCAGG 278413 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 5 37 100.0 34 GTCGCTCCTCGTGAACGAGGGGAGCGTGGGTTGAAAC # Left flank : TCCCTTCGCGATGCGCTGATGCGTAGATTGACCGTGCTGATTTGTTACGACGTGCGGGTGTCGGACCCACAGGGGCCTCGGCGCCTGCGCAAGATTGCGCGGGCTTGCAGAGACCATGGCGTGCGAGTGCAATACTCCGTCTTCGAGTGTGTCCTGGAGCCCAAGGACTGGGTCGTCCTGCGCGCCCGCCTGCTCGGCGCATTCGATTCGGAATGCGACAGCCTGCGCTTCTACTTCCTGTCGGAGGACGATGCCCGGAAGACGGAGCATCATGGCGCCAGAGCACCCTTGGACGTCGAGGGGCCGCTGGTCCTGTAGGCCTCCGCGAACCCGTCCCGGTGTACGCTCCGCCGAGGGTTCGCGCTCATTGAAATCCCGAATAGAATCATGGAGTTGGGTGAGTGGGCGTCAGGAACGGCGAGGCGCTTTCGTGGCCCCGCGGGCCGGTTCGCGAAGTTCGGCCGGATTCCGTAGTCAGAACGGTATGTTGGAAGGGCAGA # Right flank : CACGCAGGCCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGAGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCTCGTGACCGTGAGGAGCGTGGGTTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 294652-293978 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKYI02000006.1 Myxococcus xanthus DZ2 contig_000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 294651 37 97.3 34 .......................A............. GTCGCAGATCACCAAGTCTGCTTCGGGCGGCTTC 294580 37 97.3 32 ...........................A......... TCATTCGCCTCGCCGGCCTTCTGGGCCTTGTC 294511 37 97.3 35 ........C............................ ATGATGCTCGTGGACAAGGACCCGGCCGCCAGCGG 294439 37 100.0 34 ..................................... GTCAGTGCGCACCGCAACGGCCTGGCGCCACAGC 294368 37 97.3 36 ......T.............................. CGTGCAGTCTCAAACCAGTCTTTGCCCGACCGGATA 294295 37 94.6 34 ...A...............A................. CTGAACGCCGCCGCCGGCGTGCTGTTTTCGAGGT 294224 37 94.6 31 .......................AT............ TCACCCAGCAACGTGGGGGAGTACCGGAGGG 294156 37 97.3 35 ..........A.......................... ACCGCTGACTCCGTGGACCTCGCGTACCTGGGCCA 294084 37 100.0 33 ..................................... CGCGAGGCGCACCGGGTGGTGGACGGGTGGGCG 294014 37 94.6 0 ......T............A................. | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 97.0 34 GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : CGGCGAGCGC # Right flank : CACCCAGAGCACTGGAGTCCCGGTGCCGCGTCCTGCTCGTTCCTCATGAACGCGAGTACTCTCTCTCTTCAACGGGTCCGAAAATTGGGGAGCAGATCACGAGGACTCGCTCATGCTCAGGCTCCAGAAGTCGCCGGGCATACCCAATCCACGGCACTTCTGGCTCGAGGTTTTCGGGGATGGCCGTTCCAAGCGCAACGGCTCGTCTCTATCCAAAGCGAACGCGGCCGACGCCCATCGGCTCACGATGCTGCTCATCGCCGCGCGCCGGTTGGACGAATACAAGGAAGATCACAGCGCCCTCCTCCCGTCGCACATGACCGGCAGGTGACGATGTTCGAATCCACCGTGGACGGTCGGCGCACGCGTCTGACGTTGGACAGCGACACGCCGCCCGACATCCTCCGCTTCATGCCGCAGGTGGCTGCCGCTTACGGCATCGAGCTTTGAGCACGAGGACCCCGGGCGCCCCAGGGTTGGAGGAACACCTCCGTCTCCTC # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], //