Array 1 163320-160789 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMP01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712457, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163319 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163258 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163197 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163136 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163075 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163014 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162953 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162892 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162831 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162770 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162709 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162648 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162587 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162526 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162465 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162404 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162343 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162282 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162221 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162160 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162099 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162038 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161977 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161916 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161855 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161794 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161733 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161672 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161611 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161550 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161489 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161428 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161367 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161306 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161245 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161184 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161123 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161062 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161001 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160940 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160879 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160818 29 93.1 0 A...........T................ | A [160791] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181442-179827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMP01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712457, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181441 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181380 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181319 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181258 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181197 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181136 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181075 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181014 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180953 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180892 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180831 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180770 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180709 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180648 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180587 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180526 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180465 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180404 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180343 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180281 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180220 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180159 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180098 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180037 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179976 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179915 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179854 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //