Array 1 166827-168319 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZUH01000002.1 Bifidobacterium myosotis strain RST17 NODE_2_length_528670_cov_211.098151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 166827 29 100.0 32 ............................. GCGATGGTGGCGGGCAGGTGGACTATCGCATT 166888 29 96.6 32 ............................T GTGTTGAGTGGTGCGACGGTGGAAGCCGCCAA 166949 29 96.6 32 ............................T CGAAACCGCCCACGAAAACGGTGCGTGGATAC 167010 29 96.6 32 ............................T CCCGCAAGTCAAGTCCGACGGTACCGGCTGGG 167071 29 100.0 32 ............................. AAATTCCAGCGCATGACCCAAGACGAATTGCT 167132 29 96.6 32 ............................T CGTTGGAACCACGCCGAGAAACGTTGGAATTC 167193 29 100.0 32 ............................. GTAAGTTTGGTGGCGGCTGCCCCGTCGAGCAG 167254 29 100.0 32 ............................. GCGGTGAGCCGGGTCGTGTCCTTGGACAATGC 167315 29 100.0 32 ............................. CGCAAACACAACCCGATCACGAAGGAGACCAT 167376 29 96.6 32 ............................G TAGCCGCCGCCGAGTTGGATGGCCATGGTGGC 167437 29 100.0 32 ............................. AACACAGGAGGAGAACTCGTGGCAATCAGCAA 167498 29 100.0 32 ............................. GGGCCCTTGTTGGACCATTTGCCTGCCGTGTA 167559 29 100.0 32 ............................. GTCTCGCCGACTGCGATTGGGATTACACGACC 167620 29 100.0 32 ............................. CGGCGACTACCCCAGTCAACTCGACCTGCTGC 167681 29 100.0 32 ............................. TGGTATGTGCAGGTCACGGACAACGACAGGCA 167742 29 96.6 32 ............................T GGCTCTGGGACATCCAGAACGCCGGCGACGAC 167803 29 100.0 32 ............................. CTCAAGACGGACAAGACGTGGACGCTCGCCGC 167864 29 96.6 32 ............................T TCGTCATGAGCAACCTCGAGGGCGCCGACGGC 167925 29 100.0 32 ............................. GAAACCGCCCAACACGTCTACAACACCACCGA 167986 29 96.6 32 ............................G CCTCCACCACCATTGAAGGCTCCGTCAATTCC 168047 29 100.0 32 ............................. AGATCGGGCGTCCCGTCGATCCGTGGATGGGC 168108 29 96.6 32 ............................T CGACTGAGCCGGTACTCCTCGGCGAACACCAT 168169 29 100.0 32 ............................. GGACGCGACGCGATGACACTGCCATCCGAGTC 168230 29 96.6 32 ..........................T.. GTGGTCGCCGGGACGCTGGAACCCTACCGTGT 168291 29 82.8 0 ..........TAT.............T.T | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.0 32 GTGTTCCCCGCGCATGCGGGGATGATCCC # Left flank : GTGCATCATGCTGATTGGACGCCGGTGGATTGCGACGGGTTGGAACTTGTGCAACGTCCCAACAGCATGTCCAAGGGTAAAACGCAAACGGAATCGCAATCTCGACGTTCTGGCTGGAGCAATGCCAGCAAATGGCGGGCTGCACGTAGATATCAATAATAACTGCCATGCTGGTGCCGAAGTCGATGGTAAAGATGGTTTTCCGCCGTACCCAGTTGGGGCCGATGGCGAAGTCTGTTGGAGAGGACTGCCGTAGAGGACTGTCGTAGAGGACTGCCGTAGAGGACCTGCGATGTGTTGTAGCTCAGCAGCGGCTTGCATATTGTCCGGTATCTTGTATCGTCCGGAATCTTTGCACTTTGTGATGGAAATCCGCTGGTGAATTCGCTATAGGGGAGTGGCTGATGTAGGCAACTCCGCAAATAGTGCGGAGAACGAAAGTGAAGGAAACGGATGATGACGTATCCATATATCCCTTGAAATTGCTACACTTTGCAAGT # Right flank : TGATTCACCCCATGTCGTCCCGTCCAGTCATGGAGTGTTCTTCTACAGCGCCGAGGAACGCAACATCGAACTCGGATTATGGCTAGAGGGCCGGAACCTGACTGAGCAGGTGAAGGCCTAGTGATGACGGATGGATACAGTTAGCATAGTTTTTCAAGTCACGAAAAGGAAGCTCATGTATGGACCCCAATATAGTCATTAATACCGGTCCTCGAATATCCAGCCGAAGATCTCCGAAGAATGAGCTATCCAAGCCTGCATGATGTGGCGTAATGCTGAACGTGAAGTTCCGCATGTCGGAGAAGCGGGACGATTATATGGTGGGAATGGGCGGGAACTGTGGCTGGCTGAGCTCACCATCCGGGGCGCAGACCGGACCGACGCTTCTCGTCTTTTTCCTATCGTCGTAATACCGTAATTCGTTATCACCATGTCAGAGCTACTCCGACATCTTGTCTATATCTTGTCGTGGCAGACTCAGTCCTCCGAGCAGTACTGCT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 270056-267247 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZUH01000004.1 Bifidobacterium myosotis strain RST17 NODE_4_length_315309_cov_147.413676, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================================================================================== ================== 270055 28 67.9 121 GCCG.......A......A...C.A.A. TCTCTTCACGGCGTCGTTATGAAGGACGCTGGTTTTTCCCTTGCGCAGACGGGGATGAATCGGTGCGCCAATAGGAGGAAAAGCGGCGGAGTATGCCCCTGAATCCGCATGATTCCAGGCT 269906 28 100.0 33 ............................ GATATGGATGCGGCATCCCCGCTCCTGTCAGTC 269845 28 100.0 33 ............................ TGAAGACAGTCCAAGACCCGCGTTTCGAGTGGT 269784 28 100.0 33 ............................ CGCGCGATTCGACGCCACGAAGACGGCCTTCAC 269723 28 96.4 33 ............T............... GGAGACCATGGGACCCGGCGCTCGCCACGGGTC 269662 28 92.9 33 ........................AG.. TGCCAAGCAGCGAGGAGTATGTCCATATTGCCG 269601 28 89.3 33 ..C.....................AC.. CTCGTCGCGGACGGCTCGGTTCGCGCACTGTCG 269540 28 82.1 97 C.C....T..T.............A... GGCCGCATCCAACGTCATTCCCGTGCGCAAGCAATCCATACCACATAAGCGGGGATGATGAACCGGCTTGATTGGACTCCTCCAGTGTCATAGCCCG 269415 28 89.3 117 ......T.......G.........A... CTTGCTACATGCTCGTGGGAAGTAGAGGGGCGTTTGCCTCGCACGAACAGGGGCGAGCATTGTCCGAATCGAGGAAAAGCAGGGGGAATTGTCCCCAAAACCGCATGATTCCACGCT 269270 28 92.9 93 ..C.....................A... CTTGGATCCGTGATCATCCCGCATTTTAACCGGGATCTGTCCTGCGAAGACAGGTGAACCGCCCCGCCTTCGCAGGAGATCGAAGCCGGCCGC 269149 27 78.6 32 G..T.T........T......-...C.. GATCTCGACGGGAGGCGTCGTAGCGGTCCCTG T [269135] 269089 28 92.9 34 ........T.....G............. CGTCGTCGCCGCCTTTTCCGTCGATGACATGTGA 269028 28 78.6 33 .A...T..................AGTT CTGGATCGGCCACATTCCGACCGGAATCACGAG 268967 27 85.7 33 ....T........T.......-..A... CAACGAATTCTTCGTCAAGGCGTTCAAGGATAC 268907 28 82.1 29 ..C....T....T...........AG.. TTTTCTGAATCCAATCACGGAGGCGCACT 268850 28 78.6 33 ..C.........TC.....A....AG.. ATCCTCGTCCGGATCGTCCTCCTCGAGGACCCA 268789 28 92.9 34 ..C......T.................. CCCTGCCGCTCGAAGGGTCTGTTAAAGAATGCTC 268728 28 82.1 33 C..A..........G....A....A... CGCGAACCTGTGGCCCGACCGCATCGGCGACGT 268667 28 100.0 33 ............................ CTACGCCCACAGCAACAACCCGGAGTTCGAGGC 268606 28 92.9 27 .......T.A.................. TTTTGATTGCTGCATTCACAATGCGGA 268551 28 67.9 131 .ACTAT.........A....AA.....A TCCCGGTTCCCGTCGTCTCCGACGGGCCTTGCGTATGCGTCCCGCGAGAGCGGGCGCCCCTGGCGTCGCCGTGAAGGATTTGGCCTCTTCCTGTGCATGCGGGGGTGAAATTCGGCCGGCGCCCCGACACC 268392 27 67.9 91 .CC.....T....GGA.-......A.T. TGGTCGGCTGATGGACGATTCCCCGGCGACATCCGTCCCGCATGACGGGGGCGAACTCTTGCCGCTGTCCTCCGATGCATCCAATCCGATC 268274 28 67.9 59 ..C.......T..GG......CG.ATT. GTGCGCGAATCGAAGAAAAAGCGGCGGGAGACGTCCCTGAAACCGTATGATTCCAAGTT 268187 28 92.9 33 ........................AC.. CACGGCCGACTCTGACCTCTCGGACGCCGAGCT 268126 28 89.3 33 ........A...............AC.. GTCGTCGCCACCTTTTCCGTCAATGACATGCGA 268065 28 92.9 33 .A...T...................... TCTGATTACGACGAATTCGCTCCTGCCACTCTT 268004 28 82.1 93 .....T..............AA..A..T GAAGCCGGCGAACACGAGAACGGCATGCAGAACATCCGACCCGCATAAGCGGGACGGCCTCGCCAACGTGTATCCTGCGCCAGACCAATTGGG 267883 28 89.3 33 .CC.....................A... GGCGCTTCCGGCGGTGGCGGACCTTTTGGCGCG 267822 28 71.4 33 C....A.......GG......A..A.TT CGCGATGTAAACACGCGACATTGATCGCCGGAA 267761 28 92.9 33 ..............G.........A... CCTTTACGTAGTCATGTGCTCCATTTGCGCTCC 267700 28 75.0 33 ..C.CT...C......GT.......C.. TCTGAAGTTCGGAAGGGCCGACAAAGAACGGCA C [267686] 267638 27 85.7 33 ..............G......-..AT.. GTGACGGATAACCGGGTTCACAAGACGGACGGG 267578 28 75.0 33 .C.T........T.GA.....A..A... TGTGCCGCGTGCGTCGAACCACAACTCGTCGAA 267517 28 71.4 33 T........T..T.G......TCC...T GCGGATGCCGGACGCACCAAAACCGGTGCCGAC 267456 28 92.9 33 ..C.....................A... GTTGGACGTGATAACCGGACAATCGAATGCCGC 267395 28 92.9 33 ..C......................C.. CCCGGCTGATGCGCCCACACGGATCGGCGTGGA 267334 28 92.9 31 ..............G..........C.. CCGGACGCGTTCGTTTCCGACGTCCCGCGAC 267275 28 67.9 0 GA.......C...GG......A..CT.G | A [267265] ========== ====== ====== ====== ============================ =================================================================================================================================== ================== 38 28 85.4 47 ATTCGCCCCGCGCAAGCGGGGGTGGACC # Left flank : CGGGCGGACGCTCATCGTCTCCGAGACGACGGACCGGTTCGTAAAGCCCGACCGGAGCGTCGCCATCCGCCGCGCCGTCCGCTACCGGGGCCGGCTGACCGTGCTCGACCCCGACCGGCTGCGCGCCACGCTCGCGGCGGGCGTCGGCGGCGGCAAGGCGTACGGCAACGGGCTGCTCACCGTCGCCCCGATCCGGGGTTAGACCACGGGGACGCATGCATCCCATATCACGGCATCCCGCCCCACGCATGGGCACGGGGGATGCCCCATCGTTTGAGACCACGACCCACCGGCCCCGGATGCGGGGCGCGGCCGCCATGCGCGCCCGAAGGCGCGCGGGACGGGCGTGCCGTCGCACCCGCCGACGCCGGACCCCGCACCCCAAGCCCGGCCGGACGCGCCACAGGCGCGCCGCGGACCGGAATCCCGCGGGGATATCCGACCGCCCCATACGGGCGGAGAGGATTCCGCCCGCCGAATCCCATATACGAGGGATGCCC # Right flank : CCCACGACACGCCGTCCCCGTGTCACGAACGCATGCGTGTCCGCATGGACGATATGAACGAGAGGAACCTGACCGACGCCGATTTCCCGGCCGACGCGCTGGCCGCGTTGGACGGCGACGGGAGCATCCTGCTGACCGGCCGCGCCGGGTCGGGCAAGACGACGCTGCTGCGCCACTGGATGCGCACCCGACGCCCCAAGGGCGTGTATGTGACCGCGGCGACCGGCATCGCGGCGCGCAACCTGGCCGACGGCGGTTTGGAGGCGACCACGCTGCACGCCTTCCTGGGAGTGGGCGGGGACACGACCGTGGAGGGGATGGCGCTCGCGGGCGAGCGGGCGCGCGGCGACCGGGGCGACCGGCGGCGGCGCGGGCGGATCGCCGACCTGACGACCCTCGTGGTCGACGAGGCGAGCATGCTGCGCTCCGACATGGCGGACAAGACCGACGCCTTCCTTCGCGCCGCCAAGGATCGGCCGGATGTGCCGTTCGGCGGGGTC # Questionable array : NO Score: 3.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.27, 5:0, 6:0.25, 7:-1.16, 8:1, 9:0.14, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCCCCGCGCAAGCGGGGGTGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.30,-6.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [43-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 275139-274871 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZUH01000004.1 Bifidobacterium myosotis strain RST17 NODE_4_length_315309_cov_147.413676, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 275138 24 100.0 37 ........................ CTGTGGAACAACTCTGGCACTTGGAACGACGCCATTC 275077 24 100.0 37 ........................ AAGGTCGTAGCCGGTCGAGTCGATCGCGTCTGCGTGT 275016 24 83.3 37 .......G............ATT. CAGAGATGACAGCGACGCCATCGAACGGGCGCCATTC 274955 24 87.5 37 .......G...........TA... ACAGTTACCGCCCGTCGTTCCGACAGTCCAGGAGCGT 274894 24 83.3 0 T......G...........A.A.. | ========== ====== ====== ====== ======================== ===================================== ================== 5 24 90.8 37 GCCCCGCACATGCGGGGATGCCCC # Left flank : CCCATAGCGCCGAATCATGACCGATGAAGACGACGCGCGCCTCGACGCGCTGCTGGACGCCGCCCGCACGCGGGACGGCTGGACCCGCACCCACCCGAACCGGCTGGAGCGCGACGCCGGCGGCCGGCGCGCGGTCGTCGCGCTGCGCCGCACCCACGACGACGCCTGGACCGCGCTCTGGCACGCCGACGGCGTCGGCGGCGAGACCCCGCTGCCCGCCTACAGCACCGCGATCGCCCGCGAACGGCTCGACGGGCTGTTGGACGCGATCGACGCCTGGCTCGACCGGCGCGACCGGAGGGCTTTGGACCGGCTGCAACGGTAGGACGGCGCGAACGCATACCGGGGCTTGACGGACCGGGAACGGGGCCGTGCGGGGAATTGACAACCGAAAAGCGTTGTAGGGCCGATGGACGATGGCGGCAGCCGCGCGGAACCGAAGGATAAACGTGACCCCGACGTGATCGAGGCCGCGGAACGCTGCGGATTGCGTGGTATTC # Right flank : ACCGCAGGGATGGGCGATTCCTTTTCGGATGTGAATCCGGGAGGGGATCGCCCTTCCTCTTTCCCTGTCCCATGTCCCTCCCGAGTGTTGCCCGCCATCCGGGACGCATGTGCCGGGCATGACCGAAACGTTCAATCTGATCGACGAGCCGTGGCTGTCCGTGCGCACGCCGGACGGCCGCGCCATGGTCGGCCTGCGCGGTCTGTTCGCCGACGCGGGCCGCATCATCCGGCTTGAGGGGGACGAGCCGATCCAGCGGTTCGCCCTGCATCGCCTCGTCATGGCCGTCAACGCCATCGCCATCCACGACGGGATCACGCCCGTCGAATACCTGGAACGCCATTATGACCGGTTCGACCTGATCGACCCCGAACACCCGTTCCTACAGTCGCCATCGCTCGAGCCGCAGGACCGCACGAGTGGACTGGGCAAGCTGCTGGAGCCGACCGCGCCCGGCAAGCACAGGGCCTTCCTCTCCCGCCGAGGCCGCCATTCCGTCG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCCGCACATGCGGGGATGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //