Array 1 263467-262647 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHNE010000001.1 Aerococcus urinae isolate Au-33-U84, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 263466 29 100.0 32 ............................. ATATTTTTGATACCTATCTTGATTATGACTGG 263405 29 96.6 32 ............................C GAAATCTGGGAAAGTATCAAGACGTACTTTGC 263344 29 100.0 32 ............................. GGCATGACTATCGGAGGCGAGTCTATCTTTAC 263283 29 100.0 32 ............................. AAAATAATCGTCCCACAAGTGGTGGACACATG 263222 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 263161 29 96.6 32 ............................C AAGCTAACGTAGGGCTAACCTACAAGGTTGAT 263100 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 263039 29 96.6 33 ............................C CTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA 262977 29 100.0 32 ............................. TCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG 262916 29 100.0 32 ............................. ATACTTTTGGCAAAGACAAGATTAAAGCAGTA 262855 29 100.0 32 ............................. GGTACGAATAACTCCATGATTATCCACCCGGG 262794 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 262733 28 93.1 32 ......................A-..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 262673 27 86.2 0 ....................--....TT. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.3 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : GTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTTT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 284520-282417 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHNE010000001.1 Aerococcus urinae isolate Au-33-U84, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 284519 29 100.0 32 ............................. TCTCAACTCAAAAGTTAGGCGAAAGAATTAAC 284458 29 96.6 33 ............................A CGGCTATACCCAAAGGGATATAGCTAATATTGT 284396 29 100.0 32 ............................. ATCACTACCATTGAAGGCAATACTGGGAATCC 284335 29 100.0 32 ............................. CAAACACGATCAAGCTAATAAATGTTTTCATG 284274 29 100.0 32 ............................. AGTTACATTTCTAACACCACCAGCAAACACTT 284213 29 100.0 32 ............................. TATAAAGAGATCGCTTTTGAAATGGATCAAAC 284152 29 96.6 32 ............................C ACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA 284091 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 284030 29 96.6 32 ............................C AGTTAAGTCATGGGAGCGGTCAACAGGCTCAA 283969 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 283908 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 283847 29 96.6 32 ............................C AAAGCCTCCCACATCTTTAATCTCGTCCCGCT 283786 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 283725 29 96.6 32 ............................C AAAGAATTAGGAGGATAAAAACATGCCAGAAA 283664 29 96.6 32 ............................C TATGAAGTTGTAAGATGAGTTCTTCGTCTACC 283603 29 100.0 32 ............................. CCTTATAGTTACCTGCACAGATTTGATACTTA 283542 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 283481 29 96.6 32 ............................C AAAATAAGAAGTTTGAGAAAACAAAGAGGTTG 283420 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 283359 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 283298 29 100.0 32 ............................. ACAAGCTATAACTATCATCACTCATAATATAT 283237 29 100.0 33 ............................. TATTGCCGTAATTAAGTCTACTATTTGGCGTTT 283175 29 100.0 32 ............................. TCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA 283114 29 96.6 32 ............................C CAATTGGTCTATGTTTAATTTCATTTCAATTT 283053 29 100.0 32 ............................. GTCGTAAGCGATCAAGCTAATAAATGTTTTCA 282992 29 100.0 32 ............................. ACCCTGACGATCGTTTATACGATATAGATGAA 282931 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 282870 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 282809 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 282749 29 96.6 32 .C........................... AAAATCAGTTATCGAGAAGCCCAACAGATTCT 282688 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 282627 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 282566 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 282506 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 282445 28 75.9 0 ........-..C......A.T..T...TG | A [282420] ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.6 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : AAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //