Array 1 4124918-4124218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCFO010000001.1 Streptomonospora nanhaiensis strain DSM 45927 Ga0415217_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4124917 29 100.0 32 ............................. AGGGCCTCAGCGGGGTGCATCCCGCTGAGGCC 4124856 29 100.0 32 ............................. CGGGCGAGGGTATCGACGTCACTCTTAATCTC 4124795 29 100.0 32 ............................. GCGGCGTGGCGTGGTCGCTGGCCAAGGTCGGC 4124734 29 96.6 32 ............................A CCTGGTGTGGGTGGCCATGGCCGCGCTCGGGC 4124673 29 100.0 32 ............................. TGAGGGGGGTGGGGGCGGATGGCGGGAATCCT 4124612 29 100.0 32 ............................. GGCGATGGTCCGCTCATCTGTCGAGGGCACAT 4124551 29 100.0 32 ............................. AACAGGATGATGCCGGCGATAGCGCGAGCTGC 4124490 29 100.0 32 ............................. GCGTCGATGCCGGCGGGCAGGCGGTCTCTGAC 4124429 29 100.0 32 ............................. CGGGCGGCCACCACCACGAGGAGAACCCCATG 4124368 29 100.0 32 ............................. GCGCCGGCGGCGACCAGCACCATCGTGGACTG 4124307 29 100.0 32 ............................. TGTTTTCGCCTGGTCGGCTCCCTGTTTTGGCA 4124246 29 93.1 0 ...........................TC | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GTGCGCCCCGCGCATGCGGGGATGGTCCG # Left flank : GGCGAGCTCGCGGGCGGCGCCGCGCACGCGCGGCGGGGAGACGGAGACCAGCAGGTCGTGCACGGTGGAGTCGGGCGCAAAGGGTGCGGTGACGCCGTCGGGGTCCTCCTCGTCCCCGGCGGCGGAACCGGAGTGGGACCCGATGAACTGCCGCATCACCCCGAGCCGCCCGCTGCGGGTGACGGCCCCCTCGGAGGGGTCGATGTCGCCGGCGACGATCCGCAGGAGCGTCGTCTTGCCACTGCCGTTGGCCCCGACGAGGACCGCCTTCATCCCGTCCCCGACACGGAAGGACACGTCGTCGAGCAGGAGGCGGCCATCGGGCAGGTGGTAGCCGACACCGGCGACGTCGATATGGCCCATGTGCGGCACTATGCCGAGGGGCGGGGAGGGCTGTCGACCGGTTTTCCACAAGGGTGGGACTAGGGTGGTGTCGTCTCGACACAATCCGGCAATATTGGAACGGTATTCGGCCGTTCCGTTATCGCAGGTCAATAAGT # Right flank : TAACCCTTCCCTTCCGGTCTCCGCGCCATCACCGCTACCCCCAGTGCCGCCAGGGCCAGTCCTCCCCCGAGGTACATGGCTCCCGGCAGGCTGACCGTGTTCACCACGGCCCCGCCGACCAAAGCCCCTCCCCCGATGGCGGCGTTGAAGACGCCCACGAACAGCCCCGACGCCGCCTCCCGGTCCTTTCCGGCCGCTGCCGCGATCCAGGCCGTCGTGCTGACCGACACCCCGCCGTACGCCAGGCCCCACACCACCATCACCGCCGCCGCGCCGACGCCCGTCGCACCGAGGAACGGCACCAGCGGCATCACCGCCGCCAACCCCACTCCGATGACCGCCAGCGCCCGGCGCGGGTTCGGTCCGGCCAGCGCGCCCGCCGTGAAGTTGCCGACCACGCCCGCCACCCCGTACACCAGCAGCAGCGTGCCGATCAGGGCCGCGCCCGCGCCCAGGGTGTCCTCCAGGACCGGCCGGACGTAGGTGTAGGCGACGAAGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCCCCGCGCATGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4209442-4208986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCFO010000001.1 Streptomonospora nanhaiensis strain DSM 45927 Ga0415217_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4209441 29 100.0 32 ............................. CGCCCTCCGGCACCCGCCGGAGGGCGCTTTTT 4209380 29 96.6 32 ............................C CGGCTGGACATGCTCCTCAAGGCCGCCTTCGC 4209319 29 100.0 32 ............................. CGGGAGCCTTCACGCCCGCCTCACTGCGTGCT 4209258 29 96.6 32 ............................C ATCAGCACCATGGCGACCGCCACCAGGCCCAG 4209197 29 100.0 32 ............................. CGCCCTCCGGCACCCGCCGGAGGGCGCTTTTT 4209136 29 100.0 32 ............................. TCCGCGATCGGCCGGGACATGCGCGGCGGCCT 4209075 29 96.6 32 ............................C ACGGGATTGCCGTCGTGCGTGAACTTTTGCTC 4209014 29 89.7 0 .........................GTT. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 GTGTTCCCCGCAAGCGCGGGGATGGCCCG # Left flank : AGCGCGGTGTTCAAGGACGGCAAGCGCCTGGTGCTGCTGGACCCGCGCGGCGGGGAACTGGCGAGCGGCGTGGTCGACCTCAAGCCCCACCGCCTGGCACAGGCGTTCCGCGCCCACGGCTACCCCTGGCGGGGCGACGGCGATCCCCACGCGGGGGATTTCCGCCGCTGGGTCCCGGGCCTGCCGGAACTACCGGCGGGCGCCCACGCCTTGCTCGCGGCGCGCGCCAAGGCCCTGGAGAAGGACCAGTCATCGGACGCGGAGGACCTGCGCGAAGAACTCAGCACCCTGGGCGTGGTCGTGCGCGACGACCGCAACCGCCAGTACTTCCGCCGCGTCCCCGACGCGAGTGAGGAGTAGGCCGGGCGGACGTCGTTGGCCCGAGGTACGGTGACGAGGACGGCGGAGAAGAGGACAGGATTTGGCCGCCAATGCCCCAAACTTCGACGGATTCAGTCTCAGATCGATAACGCCCCCGCATTCCCCCAGGTCCCGAAGGG # Right flank : CCCCTGGATCCCGCACCGACCGCGCGGGGACTCGCTACGCGTCCAAGTACGTCAGCACTGCACGCACCCTGCGGTGACCCGAGTCTCCCGGGTCCAAGTCCAGCTTGGCGAAGATGTTGCCGATGTGCTTGTGCACCGCCCGCTCCGTTACCACCAGCTTTTCGGCGATCTCGGCGTTGCTCAGCCCCTGCGCCATATGTTCCAGGACCTCGCGCTCGCGGGCCGTCAGCCTTGTCAGGGGGCTGTCGCGCCGCACGAGCAGCTGTCCGATCACGTCCGGGTCGATCGCCGTGCCTCCGGCCGCCACCCGCTTCAGCGCGTCGATGAAGTCCCCGACCCGGCTCACCCGGTCCTTCAGCAGGTAGCCCACCCCGCCCCGGCCGTCCGACAGCAGTTCCCGCGCGTAGACCTGCTCCACGTACTGCGAGAACACCAGCACCGGCAGCCCCGGCACCAGCCGCCGGGCCGCCAGGGCCGCCTGCACGCCCTCGTCGCGGAAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 5065830-5066304 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCFO010000001.1 Streptomonospora nanhaiensis strain DSM 45927 Ga0415217_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5065830 37 100.0 37 ..................................... CTCCATAGTACGCATAGGCCCGGACGGCCGTCACGAT 5065904 37 100.0 36 ..................................... CTCGATGTCGTCGATGTCGCCCTGACCGGTCATGCC 5065977 37 97.3 36 ................A.................... AGCTTGTCCAGGGTGCGCTTGGGCGGGACCTTCACG 5066050 37 100.0 36 ..................................... TCTCGCGGTATGGGGATGGTCAGCGACCGCATAGGG 5066123 37 100.0 36 ..................................... TCCGCGTGGGCCAATGCCGCCGACGCCAACACGCCC 5066196 37 100.0 36 ..................................... GCGGCCTGGAGCACCACGGGCATGCACGCCGGCGTG 5066269 36 78.4 0 .......G................T.T..-C..G.TG | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 96.5 36 GTGGCGGTCGCCGTTCGCGGCGGCCGAGGATCGCAAC # Left flank : GAATGTGGCTCATTCATACCAACTCGCAACGACGAAGGTCACCAGGCTTGAGGAGTCGAGGGCACTACATGTGAGCGTGGCCGCAAGAGCGCGCCGCTGCTCCAGCCCGGTACCGACATCGGGCCTGGCCTTCGTGGGGAGGCGGTATCGGCGAATCGAGTGGCGCAGCCGACCGGACACGGTGTGCCACGGGTCACTGAGGTGAGAAGCCAAAGGCGTACGGCCGTCGCATCTATGAATACGCACGAACCATTCTGCCCCTACCGAAACGGCGGTTTACCACTACGGGGACCTAGCCGGCCGGGATGGTTTCCAGCAGCTCACGACGCAGGAAGTATCGTGTCCACTCAGAGGCTCACGCTCTCAGGCTTCGGAACCGGAAGCTCTCATCGACTACCGGGGAGGTTCCCAAGTATGTTGCCACCCGTTTGGGATCTTATGCGCACTTCGTCCACCTCAAGTTGCATATCGCTTGGCAGCGTTTGCCCAGGTTGAGCGGT # Right flank : GCGGCCCTGGTAGCAAACGAATTTCGAGAAACTCCCACGGTGATCTTGAGGGTCGGTTACTGTCTCGCTCGATTCGTACACACGACCGATCGGGGCGGGGCATGGACCTCTTCGGGCACAGCGCCAACAGCGCTGGCCAGCGCCACCGGCTTGACGACCACCTGCGTGGTACCGAGCGCCGGGCCCGCCGCTATGGTTCGCGTTTCGCGGCTGCTGAGGTGGCCGGCTACCTCGGGCGGGTCCATGACGTCGGCAAGGGCACTTGCGCCTGGCAGGACGGGCTGCTGCGGGCCGAGGCCACCGGGTCCCGCGTCGGGATCCCGCACAAGCACGCCGGCACCCTCCTTGCCCACCGGGCTGGGCTGGGCCGGCTGGCCGGGGTGGTGTTCGGCCACCACGGGGGCCTGGTCTCGCGCGCCTGCCTGCGTGAGGAGCTGCGCGCCGCCCAGAGCGAGCACGCCGCCTCGGTGCAGGAGGCCATCGACCGGGTGGCAGCGGTG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCGTTCGCGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGGCGGTCGCCCTTCGGGGCGGCCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 5074097-5075666 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCFO010000001.1 Streptomonospora nanhaiensis strain DSM 45927 Ga0415217_01, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5074097 37 100.0 36 ..................................... CTCCACCCGCGACTGCTCGCTGCAGCGCCGCCACCA 5074170 37 100.0 36 ..................................... TCGATGAGCTTGCGTTGCGACTGCGTCGGGCGCAGC 5074243 37 100.0 36 ..................................... ACCACCACCCGCGCCACCCCGGCCCGCATCTACGAC 5074316 37 100.0 36 ..................................... ATCAGCCACTCCCAGCACCATTGCCGAGCGGCTGAC 5074389 37 97.3 35 .................C................... TGGATCGCCCGCTGCGCGCGCTCGATCGACTGGGC 5074461 37 100.0 35 ..................................... CAGCTGGTCGACACCTGGATTCACCCGCGAGGAGT 5074533 37 100.0 35 ..................................... TACGAGCCCTCGGACTGGGCGACCGCCCGGGTGTG 5074605 37 100.0 35 ..................................... AGCAGGGCGCCGACCTCTACGTCGCCAACTCCCAG 5074677 37 100.0 39 ..................................... TTCGTCTGCCAGATGCCCAGCGCCAGCGCGTCGATCAGT 5074753 37 100.0 36 ..................................... CCTTCGGCACATTACCTACCCGTACCGGAGTGAATG 5074826 37 100.0 36 ..................................... CTCCAGGTCATCACTGATTTCGGCGATGTCCTTGGG 5074899 37 100.0 36 ..................................... CGCCTGGAGGCCCGCAAGGCGCGCTACGCGATCAAG 5074972 37 100.0 36 ..................................... CCTGCAGGAGCCGTCGGCCGCGCCCGGGCCAACCTG 5075045 37 100.0 36 ..................................... CCTGCAGGAGCCGTCGGCCGCGCCCGGGCCAACCTG 5075118 37 100.0 38 ..................................... GACTTCCTGCGGCCGCCCACCACCGAGGGCATGCCCGA 5075193 37 100.0 35 ..................................... CTTCCCTTCGGTGGTTAGGCGGTGTGCGCGGCGGC 5075265 37 100.0 37 ..................................... CCGCACATCCCGTCCCACTGCGTCACTGACGCCCACT 5075339 37 100.0 37 ..................................... CCGCACATCCCGTCCCACTGCGTCACTGACGCCCACT 5075413 37 100.0 35 ..................................... GCCGCGCGAGGCCGCTGTCGTGGCGAGTCGGGGCG 5075485 37 100.0 35 ..................................... GACATGGCCTACCGGGTCGCGCGGGTTTATGAGGA 5075557 37 91.9 36 ...............CCC................... CCCGAAGTGCAGCGCCCGAAGAACTCCAAGCGTCTG 5075630 37 91.9 0 ...............CCC................... | ========== ====== ====== ====== ===================================== ======================================= ================== 22 37 99.1 36 GTGGCGGCCGCCGTCTGTGGCGGCCGAGGATCGCAAC # Left flank : GCTGCCCTTCGTCCAGGCCCGGCTGATGGCCCGCACCCTGCGCCAGGAACTGCCCGGCTACCTGCCCTGGACGGCGTGAATGGAACTGCTGATCACCTACGACGTCGCCACCACCACCCCCGAGGGCGCCCAGCGCCTGCGCCAGGTCGCCAAGGTCTGTGAAGGCTACGGGATGCGGGTGCAGAAGTCGGTCTTCGAGGTCGTGTGCAGCGACGCCGACTGGGTGCGGCTCAGCCACACCCTGCACCGCATCATCAACGACGCCGAGGACAGCATCCGCGTCTACCGGCTGAAAGCCGGAACCTTCAAGGCGGTCTCAGTCCTAGGCACAGCCCGCCGCCTGCCCCACGACGACGCGCTGGTGCTGTAGTTGGGAACCCCAAGTGCTCATGGAAACCTCGGGAGGTTCCCAACGACGTTTGGGCACCCCTGGGTGGAATGCCGGTTTCCACACCGCTATTCAGCATCGACCATGGACGCGTTTCCCCAGGTCGCACGCT # Right flank : CGCGCTGGTCAGCAATCGAACGCGACCCGGTCTCAGGAGGTGGCGGCCGCTGTCTTCATGTGCCACTAGATCAGAAGTACGTGTATCGCCACATGTCGGATCTGGGCGGCGTGGTCTCGAGGTTCTTCTGCTGATTCGATTGAAGGTCGGTGTCAAGGTGAGCGTCCATGGTTCCTGGTCGCGCCGCGTACGGCGGCGCTGGTCAGGGAGGTGGGGTTATGCGGGCAACCACGGTGGCGCGGGGCCGGGCGGGGGCGGGGCCGTTGGGGCTGGTGCGGCCTGTTCCACGGGGTTCGACGGCGCCGGGACGGCAGTTTGGTGGTCAGCGGGCCGCTGCCGGTCCATGGCTGCCTCCCCGGGGAGGCTGGGGCGGGACAGCGGTTCGGTGGGACGCGGCCACGGCGGCGCAGACGCTTTTCGGGTATCTGCGGCACCTGGGTCTGAGTCGGGTCTATGGGGCCGTCTATGCCAAGGTGTCGGTCGTTTCCTTGCCGCGCGGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGCCGCCGTCTGTGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.60,-16.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 5 6209778-6211759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCFO010000001.1 Streptomonospora nanhaiensis strain DSM 45927 Ga0415217_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6209778 29 100.0 32 ............................. GCCACCGCCGCACGGCGTCGTCTACGAGCGCC 6209839 29 100.0 32 ............................. AGATCAACGCCCAGCGGGCGGAGCGCGGGCGC 6209900 29 100.0 33 ............................. AAGCCCGCTCCATGGCGTCCACTCATAGGTGTC 6209962 29 100.0 32 ............................. TTCCTCGCAGAACTCCTGCACGGTCAGCCACA 6210023 29 100.0 32 ............................. ACGATGACCGCGCCGTCGCCGGCGGCGACCCC 6210084 29 100.0 33 ............................. CCCGAGCGCCGCGCTGAGCGCCGCCGCCGGCGC 6210146 29 100.0 32 ............................. CCGTTGCGCCACCCCTCGTAGTCGCCGCTCGG 6210207 29 100.0 32 ............................. GGGGAGTACTACGCAGCATCATCCCTGATTTG 6210268 29 96.6 32 ............................A CACATTCCGTCCCCTCTTAATTTCCATTGAAT 6210329 29 100.0 32 ............................. GCCAGGTTGGCCGACCCGGAGGCGTTCGCGTC 6210390 29 100.0 32 ............................. CCGCTCTTGCCGGAGCCGGTGAGGCCGCAGAT 6210451 29 100.0 32 ............................. GCGGATGAGGGCGTGGCCCCCGTAGGGCTGGG 6210512 29 100.0 32 ............................. ATACCTTCGCACTTGCCCTTTGGCGGGCCACT 6210573 29 100.0 32 ............................. GCGGCGACCTCATCCTGGTGGCGTCCGACCGG 6210634 29 100.0 31 ............................. ACGCGACAGCGGTGGGGGAGCTGGCGTTCGC 6210694 29 96.6 32 ..............T.............. GCGCTCAGCGGCGCATCGGCGGCAAGAGCGGC 6210755 29 100.0 32 ............................. CTTGGTCACGGTGAGGGTGGCCACGTGGGAGG 6210816 29 100.0 32 ............................. GAACTCCGTTGGCCGGAGAGTCCAAGGTCACC 6210877 29 100.0 32 ............................. ACCTCGGTCACGCCGACGTCGTCCCACTGGGC 6210938 29 100.0 32 ............................. GGGGTGGCCTGGTGATCGCTGACGGGATGATC 6210999 29 96.6 32 ............................C TGTGGCACTACGGCCCGCTGCCCGGCGAGGAC 6211060 29 100.0 32 ............................. CCCTCCAACCCGCCGAGCGCAGCCGCATCGAC 6211121 29 100.0 32 ............................. GACAGCACCATGGACACGATCGACATCCACGC 6211182 29 96.6 32 .....T....................... ACGCACGCGCCCGTGACCCACCCCGGCTGCCC 6211243 29 100.0 32 ............................. GCCCCGTCGGATCCCTCGTCGAGGGCGTCGGC 6211304 29 100.0 32 ............................. CGCATGAGCACCAGCTAACGCCCGCGAAAAGT 6211365 29 96.6 32 ............................C CCGACGAGCACCGCCCCCGCCTGCTCATCACC 6211426 29 100.0 32 ............................. GCCGCCTACTACGACCACCACGGCGGGGCTGA 6211487 29 100.0 32 ............................. CACCGCCAGGCCCTCGCCGACGCCGGCCACCA 6211548 29 96.6 32 ............................C GACCCATGCCAGAGATACCGCGCCCAGCATGA 6211609 29 100.0 32 ............................. CGCATGAGCACCAGCTAACGCCCGCGAAAAGT 6211670 29 96.6 32 ............................A TGACTTGGGATTCGGTCGCCTCCCCCGCCATA 6211731 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.3 32 GTGCTCTCCACGCACGTGGAGGTGAACCG # Left flank : CGCTGGCCGCCCACCACCTCAGCGCATCGCCGCGCCGCGACCGATAGGGCCGGCCAACGCACTGGTCAGTGTTTCAACGAGTTCTTTGGGCAAGGGACCTCCCGGTGCTGTCCACGGCCCGGCGGATGCTGTCAGCCGGTAGATGACTACGTGCGATGAGCACCGTCCAGAGAGGCGACGACAAAAGCGCCGAGTCCAGAACGGCCACGTAGCAAACCACTCCGGCAATGACGGAAACCAGCGAAAACGCGGGTTATGCTCGGCGAGGTAGCGCCCACAGGCAGGCGGGAGCCTCGGTGCTTGCACTGATCATTTGAGGAATGGGCTGTTCCTCACCTGTCTGTGGACCTGCCCTTGGCAGTCCGAACCCGTGGCTGTCAGATAGTGGTGGCACTGCGGTACTGCACTGAGGATCGACCGAACGGACTCTCCGAATGGTTATCTGCACAAAGAGTTACCCGAACGGTATTCGGGTCGACTAAATCCGCAGGTCAATAAGT # Right flank : GGCCCCAGCGGAGTGCATGCCGCTGAGGCCGATGTGCTCTCCACCTCCCACTCGATCCCAAACATGCTCGTGATCCGGTCGGCAAGGGTCGCGTTATACAGCTCGGACAGCGCGACGACCGAGGCGTGCACCGGCCGCCCGGCCAGGGAGCGCCACTTCTGGTCCTGCACCGTCAGCACCTTGTTGCTCACCACCACGTGCGTGTGCAACTTCGGATCACCACTGCGCGAGTCGTAGTGGTCGAACGCGGTTGCGAGGACGCCGGCGACATCGACGTGCGCGACCGCACCGTCCGGCCCGGCGGCGCCGACGCGGGTGGTCGCAACCTCGCGTTCGAGGAACGCAACCACCTCTGCAACCGCCTGATCATGCGCATCCGCGATCAGCGGTTGCGTGCCCCCGTCCGCAACACCCCACCACGCCGACAGCGACTTCGGCACCGAGAACGTCAGATCGTAGCCGGCGACCGCGCGGCGGGTGCCACGCTCGGCCTCCTCCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //