Array 1 321151-319083 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIVG01000049.1 Vibrio parahaemolyticus strain CDC_K5635 CFSAN011236_contig0048, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 321150 28 100.0 32 ............................ TTGTGCTACCTCAACGAGTTTTTTCAAAGTCA 321090 28 100.0 32 ............................ AAGATAATCATATATAGAATTCAAATGCTCTC 321030 28 100.0 32 ............................ AAGATGTTGAGCCAGAACGCTATTTGGAAATA 320970 28 100.0 32 ............................ CAGTCCTCCGCCGTTTTGTAAACCCAAACTAA 320910 28 100.0 32 ............................ ACCAATACCACTACCAGTTTCAATAGGAGCAT 320850 28 100.0 32 ............................ AATCACTACAACGAAAAACGCAATACATAAAT 320790 28 100.0 32 ............................ TTCCCGATGGTAATACACTTATCAAAAAACAT 320730 28 100.0 32 ............................ TAAGGGAAAATCAGACATCGGAGAATAACTAA 320670 28 100.0 32 ............................ TTGTTGATGTGGAACTTGAATATGTCGTCGTA 320610 28 100.0 32 ............................ ACTCAGCGGATGTAGACATCACTGAGGTAGGC 320550 28 100.0 32 ............................ GTGACTTTTTGGTTTGGCGCTATGCTGCCTTT 320490 28 100.0 32 ............................ ATCTTTTCACACAGCGTTGAAATCTTATCTAT 320430 28 100.0 32 ............................ ATTTATTACGATGGTGAATCAGATGGATATGA 320370 28 100.0 32 ............................ TTAGCCATTGCCATAGCCAACTCTAATCCTGC 320310 28 100.0 32 ............................ GCGAGTAGACCGCTTAGGAAGGATTGGCGGGT 320250 28 100.0 32 ............................ TGTAACAAACCTTGCTGCTTCATCTGAGTCTT 320190 28 100.0 32 ............................ GTTACTATCTCAGCTGAATTCATTTTATTAGT 320130 28 100.0 32 ............................ TTGAAGCCAAACATGCGACTGACTTGCAGACA 320070 28 100.0 32 ............................ AATGCATCCCTGTATCAATGAACTCGTTACCA 320010 28 100.0 32 ............................ TATCCAATAAAACTCATTCCAATTAGACAAGA 319950 28 100.0 32 ............................ TATCATGGATTTTTCATTCTGTCGATAGTTTT 319890 28 100.0 32 ............................ TCCGGGAACTGGCGGCGCTGGTGCTGATGGTT 319830 28 100.0 32 ............................ ATCACGAAATGCTAGGAAAAGAACTGGCTCAC 319770 28 100.0 32 ............................ GCTTAGTTACCTTGCTTACACTCTCGCCACTG 319710 28 100.0 32 ............................ GTTCGGGATTAATCCATCCTTAGCGCATTCAG 319650 28 100.0 32 ............................ GTCAGCGTGGCGTATGGAATGGTCAATCGTAT 319590 28 100.0 32 ............................ GCGCCGCAGTGACGACAGTTGAAAGCGGAAAA 319530 28 100.0 32 ............................ AATCTATGTCATGGATTAGAAAGTTCATAGGC 319470 28 100.0 32 ............................ TTTGGTTATCAGGAGCGCTATGCAGAGTATCG 319410 28 100.0 32 ............................ CACACCGGATGACGTAGGAGCTTTAAAAGGCC 319350 28 100.0 32 ............................ TAAATCCGTTGTGATTGTCGGGTCTTTGGCTT 319290 28 100.0 32 ............................ AAAGTGAGCCTTGATAACCTCAATATAACGAG 319230 28 100.0 32 ............................ TTACATTCGCGTGGCTACTATCAATAAATCGA 319170 28 100.0 32 ............................ GCAATCAAGGCTTTAAAACCTCAAGCTTTAAG 319110 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 35 28 100.0 32 GTTAACTGCCATACAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTTAAATCACCTGAGAGAATTGAACGCGATATGCAGAAAAAAGCTGAGCTTTGGGCGGCTAAATCTGGCAGGTCTCTACAAGAGTCTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTTCATTACCGTTTATCTATTTACATAGTCAACAGACCAAACAACGTTCACCCGATAAGAGCAGTAGATTCCCGTTGTTTATTGAGATGAATGACATCGGAATTAAGCAAGAAGGGCAGTTTGATTGTTATGGACTGAATGCCAAACTTAATCAACAAGGCAGTCTAGGAACTGTCCCACAATTTTAACCAACAAAGGATAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGGCTTAAAATACATAGAGTTACAATTGATGGTGTTTAACAAGGTAGAAACATGATTTTTATCTTAACTATCTGTTGTAACTTTCTTTTATTGATTTATTCTATG # Right flank : AATCACAGTTTCATCAGCGAGTAGAAGAGCAGCAATTGGAGCTGGATTAAACAAAGGTCCCTTTTAAAGAGCTCACACAAATTCACCTTCTTTAGAAGGTGGTTATATACATAATACATGAGTCTGAATTTATGGTAAGTTTAACTCGCTTAGATCTGTTACAAATAGTAAAGTGTTAATTACTCGTAATGTTGACTCGTCTGGTTTCATAGCATAAGCGCGTTTGTATGATGTTGCGGCTAAGTAGGTTTTGCCCTCAACTTCAGCGATTTTGCCAGCGATGATGTTACTGAACCAAGACTCTCGTATGTTTACAGCTTTTGTTAATAGAGTTTTAGTGTTGCTCAAGTCATCTCTATCGAAGGAACAGACCGCAAGAGCTTCGTAATATATAGGAGCATGGAGCTCATCTCTTATACTCAACAAACTATCATACATCTCCTTTAGCTCGTTGTCTGGAATTGCGAACGGCTGGATTGAGTTAAGAATTTTAGCGGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //