Array 1 101051-99558 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXLH01000015.1 Salmonella enterica subsp. VII serovar 1,40:g,z51:-- strain 2439-64 NODE_15_length_113427_cov_0.418581, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101050 29 100.0 32 ............................. TAACTCTCGTTCCGTTCCATAGGTAGCTGTAA 100989 29 100.0 32 ............................. GGGGAATGAGCATGACCGTAGCACTAAGAGAT 100928 29 100.0 32 ............................. ACGAATGAAAAGCTGGCTTCGGCGTTAGAGAA 100867 29 100.0 32 ............................. TTCGACAGTGATCGCATGGTTGGCGGCAAGCT 100806 29 100.0 32 ............................. GTGATCCGTTCCGACCTGGGCATGAGTATCAG 100745 29 100.0 32 ............................. TCGAATATAACCATATTTTGGTTATTTAATAA 100684 29 100.0 32 ............................. AGTCTCAACGAAAAATGCTGTCTATCCGGTTG 100623 29 100.0 32 ............................. CTGGGGCTTATTCCTGACGGTATTGAGCGCGC 100562 29 100.0 32 ............................. TGCATGAAATGGATGGGGATTATTTTTTCGAA 100501 29 100.0 32 ............................. TTTTTGGCCGCATCAATGCACAGGGCAACGTT 100440 29 100.0 32 ............................. GCGACCTAGGCCGCATTCAGTTGCTTAGCCAT 100379 29 100.0 32 ............................. AAAATTTTAGGGGATTCAGAGGAAATGGTAAT 100318 29 100.0 32 ............................. CGACCAGCATCAATATGCTGGGAGTATGGCGT 100257 29 100.0 32 ............................. CTTTCTATCTTTCTGCGCATAGAGTCTCGGAG 100196 29 100.0 32 ............................. TCACGATAGAAATCGATGTTCCAGATAACGCA 100135 29 100.0 32 ............................. CGAAACATCTGGACGGCTGGATACGCGCAGGA 100074 29 100.0 32 ............................. TTTTATACTTCATTTTCTGATTCATACACTGG 100013 29 100.0 32 ............................. AAAATTCATGGTTTACCAGCGCCGCGACGGAT 99952 29 100.0 32 ............................. CCCATCTACCGACTGTTATTGCTGGTGCTACA 99891 29 100.0 32 ............................. GCGGAATGAGCGTAGTTTCCGGCAGTGGCTGG 99830 29 100.0 32 ............................. GTTTGGTAACAATCGGTTCGGGTAGCACAACT 99769 29 100.0 32 ............................. GTTAAATGCGGGGAAAGTGACGCAGAACGATC 99708 29 100.0 32 ............................. CAAACAGGAAACAGACAGGCCACCGTTCGTTA 99647 29 100.0 32 ............................. CGCTTCTTTCAAGAGGTGCTTCAGTGGACCGA 99586 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGCGTGGTCGGCATAAACAAAGCCGGTTCCTTTTAGCTCTTGCCCTAACCAGCCCTCTTCTGCGTGCTCTTGCCACTCCGGGGCCAGAATATGCAATATGGGCGGCTGGCGACCGTCGGGCAGCGCGGATTGACGTTGCCCGTGGGCGTCGCGAATATGACGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCGAGATCGGAGATCATCCAGTCAAAATCCAGATCGAGGCTCTGCTCAACGACCTGTGTAGCGATCAATACTTTACCCCGTCGTTCTGAAACGGGGGCGCTGTTACCGAACCAATTAAGCGTTTTGTCTTCAATGGCAATCCGATCGGCAAAGGCAAAACGGCTGTGAAAGAGTAATAAATCCTGCTCTGGAATGAGTCCTTCATGTAATAACTGCTGATAAATTTCCCGTGCATCGTCAACCGTATTGCGGATCCAGCAAACGCACTGCCCGGCGGCCACCACGCGGTAAATAATG # Right flank : TTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGACTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGATTTATCGAAAACCTCCGCATCATTACAGCAGCCCGTTCCCTCGGGGTACGCCGGATTGAGTCCCGGATTGGTGCTGGCGGCGATACCATGATGGTGTGCAATCGCTAATGCTCGATCCCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGTAGCGTATTTTTCTTTTCAGTGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //