Array 1 146-1494 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAEA01000152.1 Pseudomonas aeruginosa strain HUM-315-D1 NODE_52_length_37794_cov_23.6342_ID_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 146 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 206 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 266 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 326 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 386 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 446 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 506 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 566 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 626 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 686 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 746 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 806 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 866 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 926 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 986 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 1046 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 1106 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 1166 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 1226 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 1286 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 1346 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 1406 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 1467 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11954-10369 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAEA01000152.1 Pseudomonas aeruginosa strain HUM-315-D1 NODE_52_length_37794_cov_23.6342_ID_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11953 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 11893 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 11833 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 11773 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 11713 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 11653 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 11593 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 11533 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 11473 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 11413 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 11353 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 11293 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 11232 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 11172 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 11112 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 11052 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 10992 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 10932 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 10872 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 10812 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 10756 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 10696 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 10636 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 10576 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 10516 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 10456 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 10396 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 146-774 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAEA01000051.1 Pseudomonas aeruginosa strain HUM-315-D1 NODE_17_length_111828_cov_24.6101_ID_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 146 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 206 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 266 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 326 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 387 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 447 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 507 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 567 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 627 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 687 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 747 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //