Array 1 104773-105898 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUS01000038.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N30671 N30671_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 104773 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 104834 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 104895 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 104956 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 105017 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 105078 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 105139 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 105200 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 105261 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 105322 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 105383 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 105444 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 105505 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 105566 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 105627 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 105688 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 105749 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 105810 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 105871 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122156-123819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUS01000038.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N30671 N30671_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 122156 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 122217 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 122278 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 122339 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 122406 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 122467 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 122528 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 122589 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 122650 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 122711 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 122772 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 122833 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 122894 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 122955 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 123016 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 123077 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 123138 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 123199 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 123260 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 123363 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 123424 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 123485 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 123546 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 123607 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 123668 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 123729 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 123790 29 96.6 0 A............................ | A [123816] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //