Array 1 2347-3046 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CADIJA010000019.1 Escherichia coli strain PBIO880, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      2347	    29	 100.0	    32	.............................	GTCAGGGTTACCGGGTTTCTGACATTGCTGAT	
      2408	    29	 100.0	    32	.............................	CCAGGGTACTCCAGGTCACTGAAGATACGCCC	
      2469	    29	 100.0	    32	.............................	AACAGCGCCTGCTCCTGCTGCTTGAATGGCAC	
      2530	    29	  96.6	    32	............................A	CGTTTCTGAGCGCGTGCCGCTTTCTTCGTAGC	
      2591	    29	 100.0	    32	.............................	GGCTGGACGCTTGGTTCAATCGACCTAACGTG	
      2652	    29	  96.6	    32	............T................	CCGCCGCAACAATCGCGCCCGCAGTGCTGCCC	
      2713	    29	  96.6	    32	.T...........................	ATTGTTCAGAATCGTCAGCGTCAGGCAGATAA	
      2774	    29	  96.6	    32	.T...........................	CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA	
      2835	    29	  96.6	    32	.T...........................	TTCAGTGAGCCATAAAACCGCAGCTTATTTGC	
      2896	    29	  93.1	    32	.T.......A...................	TTCAGGGTGTGATTCCGCATACCAAGCAGTAA	
      2957	    29	 100.0	    32	.............................	GGCGCACTGGATGCGATGATGGATATCACTGA	
      3018	    28	  75.9	     0	..A........C..T....A..-.C...C	|                               	T [3037]
==========	======	======	======	=============================	================================	==================
        12	    29	  96.0	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGGAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGTAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA
# Right flank :  CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT

# Questionable array : NO	 Score: 5.75
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   GTGTTCCCCGCGCCAGCGGGGATAAACCG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-10] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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