Array 1 2259-123 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHTMX010000042.1 Xanthomonas vasicola pv. vasculorum strain NCPPB 889 scf_28262_42.contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2258 31 100.0 34 ............................... TCTTTCGTGAATCTCCATTTCCCATCAACCTCAG 2193 31 100.0 35 ............................... TTGAACGTCGGGATAGCCAGCTGGCGGCCAGAACG 2127 31 100.0 35 ............................... AAGGGTCAAAAACGCTCCAACGCCTGCCATGTCAC 2061 31 100.0 34 ............................... ACGCTCCTGGTCGTGACGGCGTGCGCCTACCTGG 1996 31 100.0 36 ............................... GGCCTCGGGCAGCGGTAGCCGGCTGATGCGGTCGAT 1929 31 100.0 33 ............................... CGGCTGCTGTTGTTGCTTCTCCGCACGCTCCTG 1865 31 100.0 36 ............................... ATCACCGATGCCCGCACGGTCACGCCAGACGTGGCC 1798 31 100.0 34 ............................... GACTATGACCTGTCCGGCTCGGCGAGCTGGAAGC 1733 31 100.0 35 ............................... CTGTGGGCGCTGCCGGCCTGGATCGGCAAGCCCAT 1667 31 100.0 35 ............................... TGGCCCTCGCGGTCGGTGAACACGCCGGCGTGGGA 1601 31 100.0 34 ............................... TGTGCACCTTCTGCAACCGGGGCGGCTGCATTGG 1536 31 100.0 36 ............................... TCCGCCAATGTGGCTCAGTCTGTGGAGGCTGGCCGC 1469 31 100.0 36 ............................... CATCCTGACCGACGCCGGTCCGCGCATCACGGAGAG 1402 31 100.0 34 ............................... AAGCTCGGCGCCGGTTGTCGGGATCGCGATTGGC 1337 31 100.0 36 ............................... CTCAATTCTGCAAGACGCTTGCGGGCGGCGTTGTTG 1270 31 100.0 34 ............................... TCAGCCGGCAAGAGACCCATATCATCCAATTTGC 1205 31 100.0 36 ............................... CCCAGCGCAGACTGAAAGCTCGAACTGATCGAGCCC 1138 31 100.0 35 ............................... CGTTACTGGCAACGAGGCACGAGTTTCCCGGCTGC 1072 31 100.0 35 ............................... GGACAGGTCGTCCGATGTTGGAACTTTCCGGCCGT 1006 31 100.0 35 ............................... TCTACTTGGTCTGTCATTTGCGCCCCTAGGCGGTT 940 31 100.0 35 ............................... AGGAGCTCAATGCCCGCCCAATCGGCCGGATTAAT 874 31 100.0 35 ............................... GCAATTGATGTCTGAGGAGACTTGGTTTAACGCGG 808 31 100.0 33 ............................... TGGTGGCTCTTCGGCTAGTAATCCCGTGGGCCA 744 31 100.0 35 ............................... CAGCGAGATGAGGCAGAAGCGAGAGCCCGTGCAGA 678 31 100.0 36 ............................... CGACCTAACCCTGTTACGCCTAGGCCTGCGCCGTGG 611 31 100.0 33 ............................... AAGACTTGGTACTTTGATGAGAGTGCTGAGGGA 547 31 100.0 36 ............................... CTGAGCCCGTGCCAAGTGACTTACCTGCCAAAGGAA 480 31 100.0 34 ............................... ATCGCGGCGGGGAAGTACCCAAATAGCACGGAGT 415 31 100.0 34 ............................... CGGGGACTTTGAAGATGCAAGGCTTATCGAGTGG 350 31 100.0 35 ............................... CTCGCCTGGTGCCTAGAGTACGCAGACTGGCAGGC 284 31 100.0 34 ............................... CTTTCGCCGACCTTGATTAAGCAGCTTTAGCATA 219 31 100.0 35 ............................... ATACCGTCGCGTGGCAAGCCCCTGTAGCTTGATCT 153 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 33 31 100.0 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGACTCAAGCCCCATGATGATTCTTGTCAGCTACGACGTCAGCACCAGTTCTCCCGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAATTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAACAAAAAAATAAATAGACAGCGGATTCACGGGGCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG # Right flank : CTGGTAATTAGAGTCAATTGTCAAGGCGTTTTGCGGTCGCGCCCTCACGGTGTCACCAGCACTTTTAATCTGACCCACTTCAGCAACTTCAAACTGACCCACCTCTCGTAGTCTTTGGCCCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 15607-15459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHTMX010000017.1 Xanthomonas vasicola pv. vasculorum strain NCPPB 889 scf_28262_17.contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15606 28 100.0 32 ............................ TATGCGCGCATGACGCCCGAGGAATACGCGGA 15546 28 100.0 32 ............................ CGAATTGAACCGGCCGATGCCTGACTGTCCGC 15486 28 78.6 0 .....................AGCAG.T | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CGGCCCGTCGGACCTCACCATGCGCTTCCAGAGCGCGCTTGAGGCCACGCCCGGCGCCGACGTGCTGGTAGCCACCGCGCGGCACGCGCTGCGGCGCTGGGAGAAGCTGGAGGCGCGTCCGGCGCCGCCATCCCCCGATACCACCCCATCCCCATAGCTGCGTACCATCCGACCATGACCACGACCGTCGCCAACACTCCCTACTCGCCCCACGACTTCAAGGTGCTCGCCGAGCAGCACGGCGACCTCCTTGTTGCCTACGAGCATGCCAAGCGCCAGTGGATCGCGGCCGACCGTGCGCTCCAAGACCTATACGCACGCGACCCGGCAGCGATCAGCGGCCGCGACGATGCTGCGGAGCACGAGCCGGAGCATCGGGCGTACGTTGCGGCGAAACAGGCGCTGGCCGACCAGCAACGAGTCTTGCTCGACTTCGAGGCTGCCCACCCGCTCCTCATCGAGGAGCTGACTGGTCGGCTGGTGCAGGCTGATACGCTCTA # Right flank : ACGAAAATGCCCGCATTTCGCGGGCATTTCGCCTTGCAACCTGCGAGCAACGTCAGCCCGGCCTCGCGCGGTCCTGCTGCGACTGGCCGCGCTGGATGCGCTCGTAGATTTCCTCGCGATGGACTCCCACGTCCCTCGGCGCGGTGATGCCGATGCGAACTTGGTTGCCCTTCACTCCCAGCACCGTGACGGTGACGGTATCGCCGACCATCAGGGTCTCGCCGACACGGCGGGTCAGGATCAGCATCTTGCGGTCCTCACTTGAAGCGCACCCCGTAGAAACCCCGGCCAACTCCCGGGTCAGGGGGGACCGGGAGCTTTGGTGTGGCCGGGGGCAGCTGCGACGGGGCAACCGAACAGCTGCACGGTCATCATGCAGGCTCTAAAATCCGCAGTCAAGCATTTCTAACAAATAATCAACTAGGCTCGTTCACTTCTGTTGTTTGTACATCCCCCATCAGGATCGGTTCATCCCGCGTGGCGCCAGTGTCCTCGGGCAG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 55203-53924 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHTMX010000030.1 Xanthomonas vasicola pv. vasculorum strain NCPPB 889 scf_28262_30.contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 55202 31 100.0 35 ............................... TATAACCCTGCCCCGGTTTTCGCCGATCTGCTAGG 55136 31 100.0 34 ............................... CAACGATACCCTTGGATCGCCAAGGTGATGATGC 55071 31 100.0 35 ............................... AGCGACAGTGAGTACGCCAAGGCAGCGCAGTACCT 55005 31 100.0 35 ............................... CTGCGCAAGCCGATGAAGGCGAACTCCACCCGGCG 54939 31 100.0 34 ............................... TGCGCAGTCAGGGGACACGATCGGGACTTTCGTT 54874 31 100.0 35 ............................... CTGAACTTAAGAAGCAACTATTTAACCAATACATC 54808 31 100.0 34 ............................... AGCGAGTCCGAGATGTTTGCCAGGGTGGTGTTGA 54743 31 100.0 35 ............................... TTGTTTGATCTTGCAGATTTGGAAATGTGGGATAG 54677 31 96.8 35 ..............................A TTTCCATAACTTCGATGCTCTGGGGCGCTCTGCAA 54611 31 100.0 35 ............................... TTGCCAAGGTAGTAAGCAACGGCGGCCGGGTTATC 54545 31 100.0 35 ............................... ATCACTGGGCTGGCGGGAAAACCAGTCAATGGGTA 54479 31 100.0 34 ............................... CTGCTGTGCACGTCGCTCAGCTGCAGCGACTGCC 54414 31 100.0 34 ............................... GCGCTCCACGCGGTCACGCTCTGCCTGCTCAGCA 54349 31 100.0 34 ............................... ATCACGTCATCCATCGCATCGATATAACGGGCCG 54284 31 100.0 37 ............................... GTTGATCAATATGGCTCGGCTGCGGAAATAGTGGATG 54216 31 100.0 35 ............................... AGGCACGAAGGCGCCCGGCGTAGCCTCGCGCTCAA 54150 31 100.0 34 ............................... CATACAGACCCTGCCCCCTCAATGCGCACTATAT 54085 31 96.8 35 ...A........................... TGGTCTGCGTACCCGAACAAGAAGGGCCGGCAAGA 54019 31 93.5 34 ..........GC................... AACGGCCCGTTGATGATTCGGCACGTGGCGCAGG 53954 31 90.3 0 .............A.A.....A......... | ========== ====== ====== ====== =============================== ===================================== ================== 20 31 98.9 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : CGGAACACATCGAGGTGGGTCAAATCTAAGGTGCTGATCACCGATCAAGGTGGGTCAGTTTGAAGTTGCTGTTGACAACGCGCGTGGATTGAAACCAGTGCCTATGCAGCGGCTGTATCAGCTTCGACG # Right flank : ACTTTAGACTCGCCCGCCAGCCGGACGCTGACCAGGTGCAGGTTGGAGACGCTTGAGGCCTGCATGTAGCACGGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGCACCATTATTTGACGATGATCGTCTGAGGCGTGCCTGCAAGCTTCCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCGGCCACCTGGCCATCCTGGTAGGCCAGCTTCGCCGACAGGGCCACGTTGCTCGCGCTGCCGTCGGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTGGCCGGCGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACGCTGGAGACCGTCACTGCACTACCCGTCGCAGCGCCGCCATCGGTGCTGGCCGCTCCGGTGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //