Array 1 1009-675 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTQO01000007.1 Actinosynnema sp. ALI-1.44 Contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1008 29 100.0 33 ............................. GCACCTGCAGGCGTGGACTGCGAACATGTCCCG 946 29 100.0 32 ............................. GGCTGCTGGATCTGCTGGAGGAGTGTGCGGAG 885 29 93.1 32 ..T.........................G TCGACGGTGGGTGCGTGACGTGGAACCGATCA 824 29 93.1 32 ..T.........................G TAGTCGGCCAGCATGATCCGCTAGGTCGCCTC 763 29 89.7 32 ..........G...C........A..... TTTCCGCCCGACCACGCGAAGTCGACGGTGTG 702 28 89.7 0 ...........CA.......-........ | ========== ====== ====== ====== ============================= ================================= ================== 6 29 94.3 32 GTCGTCCCCGCGCAGGCGGGGCTGTTCCC # Left flank : ACCCAAGCACCAGCCAATTCACGGCCGTTACCTGCACGCTCGCGTCCGTTGAGCGCAGTTGAGAGCAGCTCAAAGAGCCCTACTGTGTCAACGTACGACATCATCGTACTCGACCTGCGGAAACACAACTCCCGCACGTCAAACAGGTCCATTGGGAGCCGGTGGAAGCAGTTCAGCACAGTTGAACGCATCCACCGGCTCCCAATTTGCTCCCCACGCCGCTCCCACCAAACGAGCGACCACCCCAACATTGATCGATCCGACCAGCACCGCTAATCACCCCCGCCGCAGAATCCAGCTGCCCCGACGAACCCCAGCAAAGGGCAGTACCTGATCGGGGCGGCTACCCCGAACTGCCCATCTCCTGACCTTCACCCGCCTCCCGAGGCCCTCAGCAGGACCACCAGACAGGCACCCACACGTATCCGCCGCCCGGCACCGAAGCCAAAAGTGAATCCAAAACATCGTTCCGGTTGCTAACATGCCTGGTCAAGAAGTGT # Right flank : GCTTCGAGAACCGCAGGGAGACCCTGGCTGTCAGTGCTGTAGGAGACTCGGCATACCGAGGTCGCCGAATACACCGACCAGCCAGCCCTACACCGGGCCCGCACAGCAGATTGCTGGACAAACCGGGACACCGGGAAAACAGACATCACCTCCAGACTTGTGCCGCTCGATAAGTCGTCGCGCCTGGTCAGGGCGCTGGACGAGGGCATTGAGATCATGGTCCAATGATCGTGTCGCTGCTGTACCAACTGACCCGACGACTGCTGTGTGTTCCGGCGGTGTTGCTGCGCCGTGATGTCACCAAGGATGCCGAACTGCTTGTGCTCCGGCACGAGAACGCCGTCCTCCGTCGGCAGATCACCGGTCAAGTCCGGTATGAGCCGGCGGATCGGTTCTGGTTCGCCGCAGTGTCCTCGCTGCTCCCCCGACGCCGCTGGCACGAGATCTTCCCCGTCCAACCCGCAACGATCCTGGCCTGGCACCGCAGGTTCATCGCTGCG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCAGGCGGGGCTGTTCCC # Alternate repeat : GTTGTCCCCGCGCAGGCGGGGCTGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1274732-1274985 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTQO01000054.1 Actinosynnema sp. ALI-1.44 Contig58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1274732 37 94.6 36 ..................G.....C............ GTCACCGGCGTGACATCGGCGTCACCCAGCAGCGCC 1274805 37 94.6 34 ..................G.....C............ AACACGAGCTGCGGATCCTGTTGCAGGCCCGCAT 1274876 37 100.0 36 ..................................... CAAGGCGCAACCCCACATTCGAGAAAGGCTGGCAAG 1274949 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 97.3 36 GCAGCGCTGGTTCGCGAGAACCAGTGAGGATCGCAAC # Left flank : CGTGCACACCTGGATCGGATACGTGCTGAATCGCTGCATGCACACCGAGATCCTGGTTCTGCTGTGACGGACCGCCATCCGGCGATCTCGGTGTCCGGGAGGGGGCCGGGGGTGACGTTCGGCGACACATGCAGCGGTGAGCAGGACGCTGCGATCCATCGAGTTGGCCAGCCCGAGCAACGTGGTCAATGTGGTCGGGGCGGTTATCAGATTTGCTGCTCAGATGTCGCGGCCGTTGACGACACTGGTGACGAGCCGTTTATCCGCAGAAGCCCCGGGGCAGTGGCGAGGGCATCGAGGTTGACAGCGGCGGTCTGCTGAAGTCGATGGTGAGGCCCCCGACGGCTCGGACTCGGGGTTTACAGTGTTGATCTAGGTACATCAAGTGCGTGTCGACACGCCGGTCGGTTCCGAGGCTCGGTGCGGCGTGTTGACTCTGTACGTGGATGTTGCGTGGTGCTTGCTGGTGCTGTTGCATAAGTGTGTCCTGGTCAGGCAGG # Right flank : CTACAAGAACGTCAACGAACCCGAGCGAGTCCTGTCGCCTAGGGCGTGTGTCGAAGTCGGCTGTGTGGTTTGACCTGAGTTGATGTTGCTGGGCGTGTCGATGATCGAGAATGAGTGAGGTCTCCGGTAGATGGTTCGTCGACCAAGAAGAACCTGAACACCGGAGACCTCGTGGACACCTTAACGGTGACGGGGCGGTTCGACCTGACTGACGCGCAGTGGGCGGTGCTGGAGCCGTTGTTGCCCCGGCCGTCGCGGTCTGGTCGGCCGTCGTTATGGAGCAAGCGGCAGATGGTTGATGGGATCCGGTGGCGGGTCGGTGTGGGGGCGCCGTGGCGGGACGTTCCCGCGGTGTATGGATCGTGGGCGGCGGTGTATGCGCTGTTTCGGCGTTGGCAGCGGGTTGGTGTCTGGCAGGCGATAGTGACGTCACTGCAGTCGATGGCGGACGCGGCCGGGCGTGTGACGTGGGATGTCAGTGTGGATTCCACGATCGCGCG # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGTTCGCGAGAACCAGTGAGGATCGCAAC # Alternate repeat : GCAGCGCTGGTTCGCGAGGACCAGCGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.20,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 1307075-1306285 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTQO01000054.1 Actinosynnema sp. ALI-1.44 Contig58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================== ================== 1307074 29 89.7 117 ..C...G.....................C TGGGCTGCCGACTTCTTGGCCGCCTGAGCCAGGTCGTCCCTGCGTTGTTCGGGTCGGGCGATGAGGACGACATCGCAGCCGGGCTCCTCGTCGAGCACTTCGAGTTCGGCGGCGTAC 1306928 29 93.1 32 ..C.........................C GGCGTCGGCGACGCGTGGGCCGACGTCACCGG 1306867 29 93.1 32 ..C.........................G GTGGTGAAACCTGCATGACCACCGTTCAATCC 1306806 29 89.7 32 .CC.........................C TACAAGCTGTTCGGGGAGCTGGAGTTCCTGCG 1306745 29 96.6 32 ............................G TTCCTGCGTGAGCAGAACCTGGACCGGCCGGG 1306684 29 100.0 31 ............................. ACTCCTACATCGTGTCGACACAGGTTGCCTC T [1306658] 1306623 29 96.6 37 ............................C GAGGGCTGCCGCCGGAGTTTCTGCCGTCCCGGCTGAA C [1306614] 1306556 29 93.1 32 .....................G......G AACTCGTGCGACAGGCGGACCGTGGACGGCAT 1306495 29 89.7 32 ........G.........A.........C GACAGTGTCGTAGGCGTTCTGGATCAGGTCAG 1306434 29 100.0 30 ............................. GCTCGAAACATCGCTGCGCGAGTTAAACTG C [1306425] 1306374 29 93.1 32 C...........................C TGGACCTGCTCGTCGGTGAGATCGACCTGCGT 1306313 29 93.1 0 .........................C..C | ========== ====== ====== ====== ============================= ===================================================================================================================== ================== 12 29 94.0 40 GTTGTCCCCGCGCAGGCGGGGCTGTTCCT # Left flank : ACATCCTCAACGGCGACACCCCACAAGCCGTCGAAGACAAACTGAGCGGACTCATCCGCGACATCAACGGCTACAACCGATACAAACGACCCGACGGAACCCGCATCCGCGTCATCCTCTCCACCATCGCCCCACTCGGCCTCGACCCCAACAGCACCCAAGAAAAGAACCGCCAACAACTCAACAGCAAGATCATTAGCAGCTACAAACAGTACGGCGCCAACGAGCTCATCAACCTCGACCAAGCAGTACGCGACAGCACCAACCCAGCCAACATCAACCCCACCTACCTCACCGGTGGCGTCGCCAACAACGCCTACTACCAACGCATCGCACAAACTTTCCACACCGAGATCACCAACGGCGCCATCATGTTCTAGAAATGTGCTGAACAACGCCATTTCGGGGGCGCTCAAGCAGAAAGTAAATCCAAAACAACGTCCCGGTTGCTAACATGCCTGGTCAACAAGCGTCGTCCCCGCGCAGAGTCCTTGGTCGGC # Right flank : CCGCATCCAAAACCTGCTTCGCCACCAACCCATCCATCCGAACCTAGACTCATTGCCCGACCAAGGTTGCGTGATCAGCCAAATACCCCCTCAGGTTGTGCAGCACGCTTCAGCACGTGAGCGCCGGACAATCACCGGACAATCATGCGAGGGTTACCTCGCACTGCACAGACTTCACAGTATTCACTGGTCCGCGACTCAGCTAGAAGATCTGATCGACGGGGATTCACCACCTGTTCTCCGAGTATGCGCAAGTCCTGTCAAGGACCTGCACGACCTGCACCTCTAGCCGATCGACACAGGCCCGCCAGCGCCAGCCCACAGCAGGTCAACCTTGACAACCCGTCACCGCCACGTCACGCACATTGACACTAAAGTCGGGTGACGCGAAGCCACGTAACGGCAATACCACTTCACGCGATCAGGCAACACAGGCCAATAGGCTGGCGAATCCACGCCTTCACCAGTTAGCAATGCATGAGAAGTACGATGACCAGCAT # Questionable array : NO Score: 4.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.68, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCGCAGGCGGGGCTGTTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17707-16945 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTQO01000016.1 Actinosynnema sp. ALI-1.44 Contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17706 29 100.0 32 ............................. TCCATGACGGGCGGGATGCTTCCGCAGGAACA 17645 29 100.0 32 ............................. CGATTCAGCCGCCGCTGACAGGGGTTGTGGTG 17584 29 96.6 32 ............................C TACACAGTGGATAGCGCGAGATGTGGGTCGCC 17523 29 89.7 32 ..T...T.....................T TCTTGACTTGCACAGGCAAGGCGAGCCGGTCG 17462 29 96.6 32 ..T.......................... TCGACAAGCACAGCTCGACCTCGCCAGCCAAT 17401 29 93.1 33 ....C...G.................... GTGTGGCAGGACGACATCAATCAGACCGGGCTG 17339 28 93.1 32 ........-.........T.......... ATGAAGTCGTCCCACACGGTGGCCTTCTCCGG 17279 29 96.6 32 ..........T.................. GAACGTGTCGGTTCGGAGATGGCCCAGTGTCA 17218 29 96.6 32 .................A........... TCCGGCAGCCTGGTGATCCACACGTCACCACG 17157 29 96.6 32 .................A........... CCCGGCAGCCTGGTGATCCACACGTCACCACG 17096 29 100.0 32 ............................. GCGTGGAACCGCGACCTGGTCCAGGTGCTCGA 17035 29 89.7 32 ......G....T................T CCCACGACGAGGTCCGTCATCTGCTGCACAGG 16974 29 96.6 0 ........T.................... | T [16948] ========== ====== ====== ====== ============================= ================================= ================== 13 29 95.8 32 GTCGTCCCCGCGCAGGCGGGGCTGTTCCG # Left flank : ACGGTGTCGAACAAGAGGTCTACGCCCTGCTGGTCACCTACCAGCTCCTGCGCACCGTGATGGCGGACGCCACCAGCACCCGCCCCGGCATCGACCCGGACCGAGCCGGGTTCAGCATCGCCCTGCACACCGCCCGAGACCAGATCATCCACGCCGCGGGCGTCATCGCCGACACCGTGATCGACCTCGTGGGCACCATCGGCAGACAGGTCCTGGCCAACCTCCTGCCCAGCCGACGCATCCGAACCAGCCCCCGCGTCGTCAAACGAGCCATCTCCAAATACAACGCACGAGGCACCGTGGACAGAGCCAGCTACAAAGCAACCATCAGCATCGACATCCTCGACCCGCCACACCCTTGACTGGCCAGCCAAGACCTAACTACACGGCATTGCAGCTAGGCCGCCAGGCAGGCACCGATACGTATCTGACCCGCACGCTCACGCCAAAGTGAATCTAAAACACCGTTCCGGTTGCTAGAATGCCTGGTCAAGAAGTGT # Right flank : ACACCAGCGCACACCATGGGCGTCCGCAGACACCACACCGTCGATACCTGGCGAACATCCGCTCACGCTGCCAAACGGTTGATATCGAGGGCCGGTGCCACGACGGAGCTTCGTCCTGGCATCGACTGGTTGGCCACCTTGGCACGTGCCCTCCATGCCGCTTCGGCCAGTTCAGCATCTCCTCCGAGCTGCCTGACGTCTTGCGGGGTTAGCGCTCGAAATGACGCGCGAATTGGCGTTGAGGAGTAGCTCGGCGACGAGCTGCATGGCCGCGGCTCGAAGGTCGTGGGCAGTGAGAGTGACGTGGCTGCTGCGGCCAGGCCCCGCCTGCTTTCCTTGGGCGCCAACCAAGGTCAGCCACCTAACGCCATCGTGCTGGTTGGCAACATTGGCCGAGATCATCTTGACGTGGGGCACGTTGAGTCTCGTGGAGTCTTCAAGCGACAGTTTGTCATCACTCGTCGCGATAATGTGAGGAGTCTAGCCACCGCATCCCCAGT # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCAGGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-5] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20509-19325 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTQO01000016.1 Actinosynnema sp. ALI-1.44 Contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20508 29 100.0 32 ............................. GTCGGCAAGGGCGTCGGTGTCGTTGGGAAGCG 20447 29 96.6 32 ............................T CGGCTTGTCGGCTGCGTTGTACTCCGCCTTGA 20386 29 100.0 32 ............................. GCCTCGAACTCCGGCGACAACGAGCGGATGTC 20325 29 96.6 32 ............................G GTACTCGGCCCCACCAGCATGGCGAAGGTCAA 20264 29 100.0 32 ............................. GGGTCGCGGAAGCACACGAGCTGCTCACCAGC 20203 29 100.0 32 ............................. GGGTCGCGGAAGCACACGAGCTGCTCACCAGC 20142 29 96.6 31 ............................G TGTCCCTTCCTCCGACTGGAGAAGCGTCATG 20082 29 93.1 32 .....................T......G TAGCCGACCCGGTGTGAAGATCCCGCCGATGT 20021 29 96.6 32 ............................G TCCCCGTCGTTGTTGCCGTAGGTCGCGGCCCA 19960 29 100.0 32 ............................. ACCAGCAAGACGATGACACCCACGCCGGCACC 19899 29 96.6 32 ............................G TCCGGTCGACCGGCCCTGCAAGTCTGGTTGAA 19838 29 100.0 32 ............................. TGGCCGAACTCCACGACCACGCCCAGGCCGCG 19777 29 100.0 31 ............................. GTGGGTACACGGTCACGTCGACAGACCTCAG 19717 29 93.1 32 ..T.....................C.... CCGATGGCGCGCGCCTTCGGCGCGTTGCGCAG 19656 29 93.1 32 ..T.........................G GCGATGATGAGGCCGAAGCCCAGCGCCTCAGC 19595 29 96.6 32 ..T.......................... GTGACGTGCACGGCGTTGTCCGGCTCCATGGT 19534 29 89.7 32 ..T.....................C...G GGGATCCGCTCTAGTCGGATCCCCAAGTTGAT 19473 29 89.7 32 .C......T...................T TCGATGGTGTGGCCGTCGGTTTCCTGCGCGGT 19412 29 89.7 31 .C.........A................A AAACCATAGCCACCGGCATCGGCGGCGTCAG 19352 28 96.6 0 ........-.................... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 96.2 32 GTCGTCCCCGCGCAGGCGGGGCTGTTCCC # Left flank : GCTCATCACCTCCGCCGAGCCGAGCGGGTCAAGTCATCCTGGGCCGACGTCGCCACCAAGGAGTGACGTGATTCACTCATGTGCCGCAACGCGATTCGGGCGTGTCGGTCGCGGCGCTAGCGTGGCCGCGCTTAGCTCCTCTCCGACGGCCTCTATCGGTTCGCTGTGATCAGCTTCGTGGATTGACCTGACACTCGTAGGAAGAGGAGCTGCCGGCGAGCCATGAAGGCAGTCGGTGAGTCTCGGTTACCCTCATCCGCACATGTGCCGCGCATGGTCTACCCGAAGTAGACCGTTCATGATTCACCTCAACAGCGCAAGGGAAAGTAGACCGCAACCATACGCACGCCCTCGCCCTATTCCGTTGAGAACGGCCTGTCGAGTCGCGCCTGGTGTTGCAATCTTCGCGGTCCCTTCGAAGATTGACGCGGTAATCACGAGCTCTCGGTTAGCTTTGACCTGCCGCCCCCTCAGTTTGAGCGTTCGAGCGAGTTCTGCGG # Right flank : ACGGAGTGTCAGGCTAGCCCCAATGCCGTGTAGTTAAGGCGTTGGCTTGGATGTCAAGGTGGCTGAAACGGGCAACGGAGTTCCTGCTAGAACAGCGTCGACCAAGATCGCTGAAGTACAGGAACTCCGTTGGATGCCCAGTCTGTCATTACCGGTGCGGTCACCGTCGCCGAGGGCCGGTTCCGCGCCAGGCCATCTCGGTGAGCTGACTCAACTCGTCCCGTTCGAGATGGTCGACCACGCGGTGGCCGAGACCCGCAAGGTCCAGTCCCGGATCAGAGATCTGCCCTCCCGTGTGGTGGTCTATCTCCTGCTGGCCGGTTGTCTGTTTCCCGAGCTGGGCTATCGGCAGGTGTGGAACCGGCTGGTGTCCGGGCTGCACGGCGTGGACACGGCCTCGCCGACCGCGGGCGCGTTGTGCCAGGCGCGCCGCCGAGTCGGCGTCGCGCCCCTGCGCTGGCTGTTCGACCTGCTGCGTGGCCCCGCCGCCGGCATCGCCA # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCAGGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //