Array 1 90006-88879 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKX01000026.1 Micromonospora sp. MW-13 c026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 90005 28 100.0 33 ............................ TGGGAAGGACCACCGCCGCCACCCGGGGGGACC 89944 28 100.0 33 ............................ GGCCAACCGCGCGGCCAGCCGCGCCTCCTGATC 89883 28 100.0 33 ............................ CGAGACTCCCAAGCACGGCCGGCGCAACCGTCG 89822 28 100.0 33 ............................ GCGGAACGGCTAGGAATTGTCAAAGCACCACGT 89761 28 100.0 33 ............................ CTAAGTTGACGCCATGGGGAGCTTGCAAGACCT 89700 28 100.0 33 ............................ ACGAATACCGCCCGTCGGAGCGATTTCCTTGAC 89639 28 100.0 33 ............................ CATCGTTGTTGCCGCCAACGCGGCGCGGTTCGC 89578 28 100.0 34 ............................ CCGGCGCGAGTCGGTGAGCCGCCCCGGGTTGGCC 89516 28 100.0 33 ............................ GGCGACCGCCGCCGAGTGGACCGCGCTGGGCGC 89455 28 100.0 33 ............................ GCGAGGCACGACCGCCCTGTGCGGGGTGGACCT 89394 28 100.0 33 ............................ CGCCTGCCCGAGATGCCCGGCCGTTGTCGTCTT 89333 28 100.0 33 ............................ TGTTTAAGCCGTGAGTGAGACTCGGAACGTGGA 89272 28 100.0 33 ............................ CGACACCAAGGTTGGCGTGACCAACACGGTGGA 89211 28 100.0 33 ............................ CGCTCGGGTGGGTGTAGGTGCGGCCGGTCATGC 89150 28 100.0 33 ............................ GCACGCACGCTCCGACGCGGCGGCACGAGGGCC 89089 28 96.4 33 ........A................... CATCACCGAACTGGAGGCGGGGTTCCTGATCCT 89028 28 100.0 33 ............................ GGTGGTGGCGGCTCGGTGGCCGGGGGTGCAGAA 88967 28 89.3 30 .............TT........A.... GGGTTGGATCTCGCCCCGGCCGGAGGGGAT GGT,T [88945,88959] 88905 27 82.1 0 ..A...........G......-.C...G | ========== ====== ====== ====== ============================ ================================== ================== 19 28 98.3 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : AGACCCCGGCCACCTGCGTGCCGAGCAGCACCACCACGGCCAGCGCCGCAGCGCCGAGCACCACGAGCAACCCCCGGGCGGGCCCGGAGGGGCCCCGCGGGGCGGGCCGGTCGACCTCACCGTCAGGGGACATCACGCTCACCATCCTCGATCGGACACATCGTTCTGCCGATGACGGTACGGCCCTCATGCGACACCCGCGAGGCGAGCATCCGGTCCGCCTGTGTCGCGTTCTGGACGGGCCTCTCCGCGCCATGCCGGGCCTGTGTCGTCGTACCAGGTCACCAGCCCGCCCCGGCGAGTGGTGGGCCAGCCGGAGCGCGGCGGGGGAGACTGGGACCTGTCCCGACGCCGGACACAGCTACCCGCCGGCCCCGATCCCGACCTACGCTGTGTCCGGCTCGCGAAACGCTCAGCTCATCGCCACCCGGGAGACGATCTTGCGCGGCAAAGTGAAGGAAAACCGGGGAGTTGATCTATAACGCCCCAGCTCAAGAAGT # Right flank : GGTGTCGCGGTCCTTGTTGCCTGTGCCGGCCGGCTGCTTCCCGCGCAATTGCCCAGCTCGGCGAGGGCCGTACTTCCCCGAGGGGACAGACCTGTCGATACACACGCGCGACGACCTGGACGCCGTCGCCGCCGAACTCAACAGCAGACCACGCAAAGCCCTGGGCTGGGAGACCCCAGCCAGCGGACATCTCGCCTTCTCGAAGCCCCCGCCTGAGACCGAGGCATCATGAGCGTGTGAACATCGAGCTGTTCTACTTTGCCGGCTGCCCGAACTGGCACCTCGCAAAAGAACGCCTCAGGGAAGCCCTCACGGTCGTGGGCCGCCTCGACCTGCAAGTGGGTCTCCGCCCCGTCGAGACGGACGAGCAGGCTCGGAAACTGGGGTTCCCCGGGTCACCCACAATCCGCATCAACGGCCGCGACCCCTTCCCCACGGCAGACGACGTCGGCTCCCTGAGCTGCCGGGTCTACAGCACACCAGAAGGTCTCGCGGGTTCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 202418-200750 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKX01000033.1 Micromonospora sp. MW-13 c033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 202417 37 100.0 36 ..................................... CGCACCCGCCCCGTGCCGGCCCGGCGGATCCTCGCG 202344 37 100.0 38 ..................................... ATCAGTGAGGCGGCCAGCATGGGCCGGTAGAACACCGT 202269 37 100.0 38 ..................................... TCCGCCCAGCGCACCGCCGTGATCACCACGTGTACGCC 202194 37 100.0 36 ..................................... GGTGCACATCCGGCTCAAGGACGAGCTGGATTGGGA 202121 37 100.0 36 ..................................... TCGACGTCGGGCACGTTCGGGTCTGCGAGCTTCCGC 202048 37 100.0 36 ..................................... GGCAGGGTCGCGTCGATCTCCAGGGAGCGTCGGCGG 201975 37 100.0 38 ..................................... TCGATATCGCCGGTGGTCAGTGGCATGTCGTCCTCCAA 201900 37 100.0 38 ..................................... TTTGGTTCCTGGGTGATCCGCACCCAGGCCAGCGAGTA 201825 37 100.0 36 ..................................... CCGTCGGGCGGCAGCTTGCACCCCGGGAGCCGACAC 201752 37 100.0 37 ..................................... ACGCTGGTCACCGCCGAGGATGACGGCTCGCTGGTGG 201678 37 100.0 37 ..................................... CGCCGCCCCCGCTGCCCGCGGGTGCGGTCCGGTGGTC 201604 37 100.0 36 ..................................... GCGCGGTCGCGCAGCTCGGCTGGCGGTCGCGGCGTG 201531 37 100.0 37 ..................................... GTCCCCCCACCCGCCGCATGGGATGAATGCCTGCGAG 201457 37 100.0 39 ..................................... TACATCGGCGGCGGCATCAAGGCGCTGATGCGTGCGCGG 201381 37 97.3 41 .........................A........... ACGGTCATGGTGCCGCCCGGGTTGAACTCGGCGCGCAGCCA 201303 37 100.0 36 ..................................... CCCCCGGTCAGGTCGGACCAGGCGGTGGACAGGTGC 201230 37 100.0 36 ..................................... CCGCCGATCCACGCCGGCGGCAGGGGCGGGCCGTGC 201157 37 100.0 36 ..................................... CGCGTCAGCGGCGACGCCCCGTCCGGCAGGTTCACC 201084 37 100.0 38 ..................................... AGCAGGATTTCGTACGCGACCGTGACCCGGGCGGCGGC 201009 37 97.3 37 ...............T..................... GTCTACGACTGGCAGGATGCGTTCTCCGGTCTGGCCA 200935 37 97.3 37 .....................A............... GAGGTGGTCTGCGTCTTGTTGGCGAACGGCTGGCCGT 200861 37 97.3 39 .......................A............. CAGGATCAGGCGGCGGCGATCATCCGTGGGCTGCTGCAC 200785 36 81.1 0 ....T....................ACA.C-....C. | ========== ====== ====== ====== ===================================== ========================================= ================== 23 37 98.7 37 GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC # Left flank : CAACCTGTAGCACTCCCCTGGCCGGCCTCATGGCGACCAC # Right flank : GGCGCCTGTCAGTGCGGCGACTACCTGTGGCTGATGCTCAAGGGCTGCGTCCAGGCCCAGGTCGCGCCCGCCGGAGTGGAAGCCGCGTTCGACCTGGTGCCGTGGACTACGTCAGCGACGCCATCGTCACCCTGTCCCGGCAGCCCTCGGCGGCCGACCGCACCTTCCACCTGGCCGCCGGGTGGCTGCTGCGTCTGGACACCGCGCTGGGCTGGCTGCGGTCGAGAGGCTTCGCGCCGCCCGAGGTCGAGCCGGGGGGAGTGGCTGGACCGGATGGGCGCGGACCCGGCCAACGCGGCCCCCGGCCGGCGTCGCCCGGCGTACCATTTCGGTCAGCTCCTCCAGCAGCCTCCGCCAGGGTTCCTTTCAGGCGCTACGAAGTCGACGAGGCCGGAAGCGGTACGGGCAGCGGCTGCTCAGGCACGTACCGCCGTTGCTCGCCGCGCGGCGGGGACAACCAGCGGAGAACCCGTCTCCGGGTCGTCGATCACCCGGCAGGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.20,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 55727-56181 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKX01000038.1 Micromonospora sp. MW-13 c038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55727 28 100.0 33 ............................ GGTGTGCGCGGAAAAGTGGCTAGAGGAAAGGGG 55788 28 100.0 33 ............................ GGTCGTCCTGGCGTCCCTGGTCGGCGTCTTCGT 55849 28 100.0 33 ............................ AGACACGCATGTGGACCGACAATGGCGAGCCGA 55910 28 100.0 33 ............................ CACCGGGCACGCAAGGACACCCGCGTTGTACCG 55971 28 100.0 33 ............................ GGCCGGGCATCGGCATGAGGTGCGGTACCGCTG 56032 28 100.0 33 ............................ CAGCGCGCTGGTGGGTACGCGCAGGGCGCGGGC 56093 28 96.4 33 .....................A...... GCACACCCGGGACACCTCACGCAAGGAGTGTCC 56154 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CGACGAGGACGGGGTGGCTGCCCTCCTGGCGAGGTGGGAGAATGTCCGGACCGAGGCGCTGCCCCGCCGGCAGTCCATCGACCTGATGAAGGAAGTGCAGGCTCACCATGAACCTCAGTGACGCCACGTGGCGCAAGTCCACCCGCAGCGGGTCGAGCGGCGGCGAATGCGTCGAGGTCGCCGACAACCTGCCCGGCGTCGTCGCCATCCGCGACAGCAAGGACCCGGCAGGCCCGGCGCTCACCTTCGACCCGGCCGCCTGGACGGCGTTCCTCGGCCTCGCCAAGCGCGCCTGACCGACACCGACCCGAAGACCCTCGCGCCGAAGGTCTTCGTCGTCTTTCCGTACGGCGGCCTGGATCCTGTTCAACGACCCCAGTCCCGCTTGCCCTCTGCACGACCCTCGAACCGTCAAGCGAGTAGCCGCCCAGGAGACGATCTTGCACAGCAAAGTGAAGGAAAACCCGACTGTTGATCTTTAGAGCCCCAGGTCAGCAAGT # Right flank : CTCAAGGCAGGCATGACGCCGCCGAGCGATGGCGGCTGCTCCCCGCGTCGGGAAAGAAGAAGCTGGAACGGCCATGGTCGCCACAGCAGATTTCGGTATGGCAACGAAGACGGCACCCGATGTGTTTGCGGCGGCCTCGCGACCGGACTTCCTCACTGTGGCTGAAAGCCTGGCCGTGGCCGCCGACGATGCCGGAAAGGAGAGCACTCACTCCTTCCACTCCTAACGTATAGCGCACCGGGGGGCTTGCGGCAAGACCCGGGGCGTGCCGCAGAATCGCTGGCCGAGGCCAGGAACTGGGGAAATGGGAGCCGCGAAATGCGAGTGTTGTTGTCGACGTATGACTCGCGCGGGTGGGTCGAACCGCTGGCGGGCCTCGCGGTGCGGTTGCGGGCAGCCGGCGCGGAGGTGCTGGTGTGCGCGCCGCCCGGCGGGGAGTTCACGAAACGGCTGGCCGGCGTCGGCGTGGCGGTCGGCCGAGAAAGGCCGCCGGTGACCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 35279-35127 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKX01000006.1 Micromonospora sp. MW-13 c006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35278 29 100.0 32 ............................. TGCCCCAGGCGGAGACGGTGCCCCGGCGTGAA G [35261] 35216 29 100.0 32 ............................. TGGCGGGCCGGCTCGTCCGGGTCGTAGACGGT 35155 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 CTGTTCCCCGCGCACGCGGGGGTGATCCC # Left flank : CGCCACGGCGGTGAGCGCTCGGGAGTCGCGCGACCTGATCCGGGGGGCGATCGACGAGCGGTGAGAGGACGGCGCGGGTGGAAGAGGTCGGCACGGCCCGTGTGACCTGGCGGAAGAGCAGCCGCAGCAACGGTTCCGGCAACTGCGTTGAGGTCGCGGACAACCTGTCGGGCAAGGTCGGGCTACGGGACAGCAAGGACCCGACCGGCCCGGTATTGACCTTCGAACCGAAGTCCTGGGCCACCTTCGTCGAAGGAATCAAAGCCGAACTTTCTGGCAACTGAGGCAGCCGCCACCAGACAGAGCGGCAGGAACTCCATCAGCGGATCCAACGCCGTGTGTCGTCACGCCAGCCGGGCCGTCCAGCCGCCGATGACGCCCGTACGTCTGCGCAAATCGAGCCGGGCAACAGCCATCAAGCACCCGCCAGGGAGACGATCTTGACTGGCAAAGTGAATAAAATCAGCACAGTTGATCTATAGACCCGCAGGTCAAGAAGT # Right flank : ACCGCCGGCAGAGTGCCGAGCGGGTCGCCCAGCCGCTCGACAGAGCCTCGACCTCCCGTCGTACGGTGGGATTCCGGAACGATAGCGGCATGGTCGCTGCGGAGTACACCAACACCGTCCGCATTGGATACGCCCGCACCAGCACCCGCGCCAAGACCAGGTTCAGCCGACCCGATCTCCAGAGGGGACGACGCACGTGGTCGAGACAGTGCTTCAGCTCATCATGCAGATGGCGGGCGGCACCGCCGCCGCGGCCGGCACCGAAATGGGGCAGTCGATCTATACGATGGTGCGCGACCGGCTCGTGGGGACCGACCGAGGATCCACGGCCCTACGCGCGGTCGAGGACCGGCCCGACGACCCGGCTGCGATCGACGAACTGCGCACGCTGCTCCAGGCGGAAGTGGACGCCGACCCGGGCTTCGCCGAGCGCATCGCCGCGGCCCTGGCGGCCACCAAACCCACCCGCACCACGACCGGCAGCATCACGTTCGAGGGCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3245-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKX01000062.1 Micromonospora sp. MW-13 c062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3244 37 100.0 39 ..................................... GTGTCGTCATCGATGAACAGGTCACAGCGGACCATCACT 3168 37 100.0 40 ..................................... GCCGGGCGTTAACACCCGGTCCGCTGCCTGACCAGGTCAG 3091 37 97.3 36 .....................C............... GCGTGTTGCGTCACAACGCGTGACACCTTACCTAAT 3018 37 100.0 38 ..................................... CACGCGGGCGACCGTGCGACGGTCACGCGGACGTATGT 2943 37 100.0 38 ..................................... CTGACGGCTGACATCCCCGAGCTGGGTCGTGTCCCGCC 2868 37 100.0 36 ..................................... CTGCGTGTCTTCCTGCGATTGGCATGTGCTGCACAT 2795 37 100.0 38 ..................................... CCAGCGTCGGTCAGCTTGTACGGCTGCCCCCGGTGCTC 2720 37 100.0 37 ..................................... GCCCGCGAGCTGGTCCGCCTCGCCGACGGGCTCCGCT 2646 37 100.0 37 ..................................... TCGTCCTCGATGGCCTCGTCGCGGCGGGCGTCGCCGT 2572 37 100.0 35 ..................................... TTCTCGTCAGGCGCCGAGCACTCCGCGGTGACCGC 2500 37 100.0 38 ..................................... CTCGCCGATCCGACGGCCGGCCCCACGCATGCCCGGGA 2425 37 100.0 35 ..................................... GTCGAGGAGGTCCTCGGCGACGCGGTGTGGTCCGG 2353 37 100.0 37 ..................................... CAGGCGCGGCACGGCCTGGTGGTCGACGGGGTGATCG 2279 37 100.0 36 ..................................... GCCCGACGTCGCTGACGGGGTGGCGGTCATGAGGCT 2206 37 100.0 38 ..................................... CCCTGGATCGGCCAACACGACGGCACGAACGCCCCGGT 2131 37 100.0 37 ..................................... CCGGGGAGGACGCAGGGCACGGTGGCGGGCAGGCCGA 2057 37 100.0 35 ..................................... CCATGCGACCGGAATATCCCCGTGCAATTCCATTG 1985 37 100.0 38 ..................................... CTTGATCGGCTCGACGGTCATCGGGCACCCGCCCGGGT 1910 37 100.0 39 ..................................... AGCCGTTGGGTAGGCGGCTCACTGAAGGGAGGGGGCACG 1834 37 100.0 38 ..................................... TCCACCACCGAGAGCCCTTGCGGCAGCCACCCGCCGGA 1759 37 100.0 38 ..................................... TCGCCAATCATGGAGTTGTCGAGCCGAACGCGCAGATG 1684 37 100.0 37 ..................................... CGGCGTGACCTGGGTCGACCGGTGCGGCTTGAACTTG 1610 37 100.0 37 ..................................... ACTAGCCCGGGGGTTTCGTCATCCCCCAGAATTGCGT 1536 37 100.0 36 ..................................... TCGGTGCGGCGCTGCTCTCGGACGATGCTCTCGAAG 1463 37 100.0 38 ..................................... ACCGCAAAGAGCGGCCAGCAGTGGGTGCTGCGGTCCGG 1388 37 100.0 35 ..................................... ATCACCGGCAAGGAGGCGGTGCCGTGGGGTCTCGT 1316 37 100.0 37 ..................................... CTCAGCCTGCGGGGCGTCCGGTGACCCGCCGCCGGAC 1242 37 100.0 39 ..................................... GGGCTTGCCATGATGGGCGTACCTCCTGTTGGGGGATGC 1166 37 100.0 38 ..................................... GTCGTAGTAGCGCATCATGACGTCTCGTAGCGCGTAGT 1091 37 100.0 38 ..................................... TTCCAGCGGACCGCGCCATTTCTCAGCCGCGCCCGGTG 1016 37 100.0 38 ..................................... GCACCCGTCACGGTCCGCACGCCGGAGGAGACACCGGA 941 37 100.0 37 ..................................... TCCGCCTCCACGGTCGCGCCGGTCGCCAGCACGAGCC 867 37 100.0 38 ..................................... GGAAAGTGCAGGGTGCCGAAGACTCGCGTGATGTCCCA 792 37 100.0 42 ..................................... CCCGGGCGAGCTGGTTGGCGTTGTTCAGCGGGCCGTACAGCA 713 37 100.0 37 ..................................... ATCATGCCGAGCAGTATTGCAGTAGTGCAGTCATGCC 639 37 100.0 39 ..................................... ACCAAGCGTCCGGCCCTCCAGCTCGACGGCCTGGCGGTG 563 37 100.0 37 ..................................... TTCCAGGAAGGCGGCAACCATTTCGTCTGCGGCGGCG 489 37 100.0 36 ..................................... CCGAGCGTGCCCTTGAGTACGTCTACCGGCTGCCGG 416 37 100.0 38 ..................................... GGCGATAGCGATAGCGATAGCGTGGGAGAGGGGGCGGA 341 37 100.0 39 ..................................... TATATCGACCGGGAGGGGCCGGCGAACGAGGGTTCGGCT 265 37 100.0 40 ..................................... CGGGTCAGGCGGGCTGGGTGGTGGCGGGCTGGGTGCGTCG 188 37 100.0 38 ..................................... GGCTAGTCCTGCCTCGATCTGGCGGGCCACCTCGGCGG 113 37 100.0 39 ..................................... TGGGGCTACTGGAAGCTGGAGCGCGTAGCCATCCCGGTA 37 37 97.3 0 ...............T..................... | ========== ====== ====== ====== ===================================== ========================================== ================== 44 37 99.9 38 GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC # Left flank : TGCCACTCGTGCAGGCCCGGCTGCTCGCACGTCACCTCCGCGGAGACACGGCCGCGTACCGGCCATGGATGGTGAACTGAGCCATGGATCTACTCGTCACGTACGATGTCGAGACGGTCACCCCGCAGGGGCAACGCCGACTCCGCAAGGTCGCCAAGATCTGTGAGGCGTACGGGCACCGCGTGCAGAAGTCAGTGTTCGAGGTGGTCTGCCGCGAAACCGACAAGGTGCGCTTCGTCGCCGCGCTCCAGGAAGTCATCGACCCAACTCAGGACAGCATCCGGATCTACCGGCTGCCGGCTTACGCGCTTGACGACGTCGAGCATCTCGGCAAGCCGCGGCCGATCGACCCGCGGGGAACGTTGGTGATCTAGGAACCCCAAGTGAACGCGGATATACCAGGGGGTTCCGAGCCGAAAAATGTGGATTAGATGAATAAAACGGACCGCGAGTGAGTCGAATGTGCATCGACAGATTCCTATTTCCGCTGCTCGGGAACC # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.20,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 16416-12298 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKX01000062.1 Micromonospora sp. MW-13 c062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 16415 37 94.6 37 ......TT............................. CTTGATGTAGCCGTCCCACACGACGTAGCCGATGGTG 16341 37 94.6 38 ......TT............................. ACCACCGGATCGAGGAACGGCTACAGGGCCCCCCGGTG 16266 37 94.6 38 ......TT............................. GAGATGTGCAGCCCGTCGGGGAACTGGACCACGAGCGC 16191 37 94.6 36 ......TT............................. CTCCCACTCGATGAACGGGTCACCGTAGCCATAGAC 16118 37 100.0 38 ..................................... CCCCGGGTCACCCCGTACCCCGTCGGCAGCACATCGAG 16043 37 100.0 39 ..................................... TTTCACTACCGTTGTGACGTTCGGCGCGTGGATCATCGT 15967 37 100.0 37 ..................................... CCATCGTAAGACCGATCATGGTCGAATTCTGTGCAGC 15893 37 100.0 38 ..................................... TGGAACAAGACGCCGTATTCCAACATCTCCGCCGGCCC 15818 37 97.3 37 ..............C...................... ACCTCGGCGGTGATGCCGGAGCACAAGACCGCCGAGG 15744 37 100.0 38 ..................................... GTGGTGCGTGCCATCACCTACAACGCCAACGGCATCAA 15669 37 100.0 37 ..................................... CGGAGTTTCGTCGTGCATTCCGGCCGCCTTGTCGCGG 15595 37 100.0 37 ..................................... GTCGCGGACGTGGCCCCGTGAGCCGGGCGGAGCTGGC 15521 37 100.0 37 ..................................... CCGACGGCCACGAAGAAGGCCACCCGGACCAGGTAAC 15447 37 100.0 36 ..................................... TTGTCGCTGCGCATCCACCCACCGATGAACGTGGCA 15374 37 100.0 38 ..................................... TCCGACGCCGAGATCGTGGCCAGTGGCCTGGCCGCGAC 15299 37 97.3 38 .....................A............... GAGGAGTACCTCACCGCCGACAGCACCCGGGTCAAGGC 15224 37 100.0 38 ..................................... CAGAAGCGGCAGGGAATCGTGGTCGACGGCGTGGCCGG 15149 37 100.0 36 ..................................... ACGATGCGCTAACCAAAGACTCCCGTCAATCAAAGA 15076 37 100.0 37 ..................................... CCGTCTCGCGCAGCCAACAGCCCGCCGGCCTTGCGCA 15002 37 100.0 38 ..................................... TACGCCGGTCGATGCGCTGGTGCTTGCTCCTGCTGGGC 14927 37 100.0 37 ..................................... CTAATGAGTACGACGCGCTCGCCGTCGCGCCGCACTA 14853 37 100.0 36 ..................................... CTGGTCCGCTCCACCCAACCGCCCCGCGTCCCCGGC 14780 37 100.0 37 ..................................... GACCGTCCGTACGCCGTGCGGCAGCACGAGGAGCTGA 14706 37 100.0 39 ..................................... GTGGTCAGATCTCGTCGCAGGCCAGGTCGTAGCAGTCGT 14630 37 100.0 37 ..................................... CGGGACGCGCGGAACGCGACCGGTGTGTGGAACGGCC 14556 37 100.0 38 ..................................... TGCCCGTCGGCGAGCGGCGGCGCCCCGTGCGCCACCGG 14481 37 100.0 37 ..................................... AGTGCGGCGGTGATCGCCTCGGCGAGCTGCCGGATGT 14407 37 100.0 38 ..................................... TGCCACCGGGGACGCGGCTGCGACTCGTACCGGTGCTG 14332 37 100.0 36 ..................................... CGCGCACCCTCCATCGCAGAGAACACCAACTGCTGC 14259 37 100.0 37 ..................................... ATGTGTGCGGGTGAGCGACCCGCTAACGAGGGAGAAG 14185 37 100.0 38 ..................................... CGGGAGTCCCGCTGAACGGCATGAGAAAGGCCCCCAGG 14110 37 100.0 36 ..................................... CCGGCCTCCGTCGCCCGGAAGTCCCCCCGGTCCATC 14037 37 100.0 39 ..................................... TGATGGCGGTCCTGACCCCGACGATTCAGGTCCTGGCGA 13961 37 100.0 37 ..................................... CGGTGAGAGGAGAGACCGCCCATGCCGCTCTCCGATG 13887 37 100.0 36 ..................................... CGGGCGTCGGCGATCGCGTCGACCGCCGACTCCTCC 13814 37 100.0 35 ..................................... GGAAATACACCGGTGCGGTGGTGCCTGGCTGCCAG 13742 37 100.0 37 ..................................... CCTACGGGTGCCGTCCGGGTGGGCCGCCAGGAGGAGG 13668 37 97.3 38 ...................................T. GCCAAGAACTACGGCTATATGCCGATCCTGCTCACGGG 13593 37 100.0 38 ..................................... CTTGACCACGGTTGTCACGTTCGGGGCGTGAATCATCC 13518 37 100.0 38 ..................................... CTGGATCGCTCCGACCACGATGTACCCGGCCGCGCGAC 13443 37 100.0 36 ..................................... CACCGCGTACCTCCTCCACTGCCTGCGGGCAAAGTA 13370 37 97.3 35 ........T............................ CTGTCAGAGATGGTCACCTGCGCCAGCACGCCGAA 13298 37 100.0 36 ..................................... TGGGCGAGCCGCCGGCGACCTGGTCTGCGCAGTCCG 13225 37 100.0 36 ..................................... ACAACCGAAGTCGTGAGGCCGGTCGCCGTGGTGCGC 13152 37 100.0 38 ..................................... TGGGGGTTGCGCAGCAATCCCGTATGTGCTAGGAAGGC 13077 37 100.0 37 ..................................... GCTGAACTCGCCGGACAACTCGGCCGCGACCACCGCC 13003 37 100.0 36 ..................................... AGGGCTGCGCTCTGCACGAGCTTGACTGTGCCGCCT 12930 37 100.0 38 ..................................... ATCGTGGAACGCCGTTCGATGACGGCGGCGACCGCGTA 12855 37 94.6 38 .....................C............C.. CCGTCTGGGGCGACCAGGAGCTGCCGTATGACGCCGAC 12780 37 97.3 35 .....................C............... TCCGTCAGGATCTGCGCCTCGTCGAACACCTCGAC 12708 37 100.0 37 ..................................... GACGCGGCACCCAACTTGTCGGCAGCCTCACCGGCCC 12634 37 97.3 39 .................G................... TGGACATGGCTGAACTATATTGCGATGTCAAAGGCCAGT 12558 37 94.6 38 .....................C...A........... CACGAGCACCTCCAGGCGGTTGCCGTTGTGGGCGGTGC 12483 37 100.0 37 ..................................... CGTTGGGGGGCAAGGCTGCCTTGCTCCCTGCGTTGAC 12409 37 100.0 37 ..................................... CAGTACTGGGTCGTGTTCATCGCCGAGGGCTGCGGAG 12335 37 83.8 0 ...........T.....T...A........CT.T... | C [12326] ========== ====== ====== ====== ===================================== ======================================= ================== 56 37 98.8 37 GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC # Left flank : CGGACGGAGAGCGCGAGGATCAGCGTGGCGGCGACCATGGCCGGGTTGCCGACATCGGTGGCCACACCTGCGCGCGTATCCAGCCATGGATCTACTCGTCGCGTACGATGTCGAGACGGTCACGCCGGAGGGGCAACGTCGACTCCGTAGGGTTGCCAGGATCTGTGAGGCGTACGGGCATCGTGTGCAGGAGTCGGTGTTCGTGGTGGTCTGCCGCGAAACCGACAAGGTGCGTTTCGTGGCCGCGCTCCAGGAGGTGATCGACCCGACCCAGGACAGCGTCCGGATCTACCGTCTGCCGGCTTACGCGCTAAACGACGTCGAGCATCTCGGCAAGTCGCGGCCGGTTGACCCGCGGGGAGCGTTGGTGATCTAGGAACCCCAAGTGAACGCGGATACATCGGGGGGTTCCGAGGCGAAAAATCTGGATTAGATGAATAAATCGCTGCTCGCGAGTCGAAAAGGCATCAACGGATTGCTATTTTTGCTGCTCGCGAACC # Right flank : GCGCAGTCCTGGGGTGATCGCGGCGCCGCTCGTCGTACCGTCTCGGTCAGTCCCCTGAAAGCTCCCGCCAGGGTTCCTCGGAGAAGTTGCGAAATCGCCGCCCGATTACACAGGGGCGGCAGCGTGGCGCGGAGCTACGGCGACCGGCGCGCAGTTCGGCCGTTGGTCGACGAACGCGGCGGCTGGCGCGTCGAGCGCCGGGAGGTCCTCGAGCCCGCCTGGGTGTGGTTTACCTGGCCAAGATTCCGTCGCTCGGAGCAGCTCACGAACCTTACGTTTCAGCTCCACGATCCGCTGAAATATTCGCCGTTGACGTCCCAGACGCTGACCTTCATCGATTGTGCCTGCCGCTGACCAGCCGACTTGCGACATTAGAAGGCGAGCCGGACCGCGCATTGGCGCAGCTCGTCAGTGCACTTCTTCGGTGCAGGCACGGTGACTCCTGCCTTCAAAGGCTGAAAATCCTCCACGTCACTCGGTGCGCTTCACCGCCGAAACCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCCTCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.20,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 31378-30577 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKX01000084.1 Micromonospora sp. MW-13 c084, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================= ================== 31377 30 96.7 31 .............................T AGCGCCAGGACGTGTCGACACTGATTCCGGT 31316 30 96.7 31 ............................C. CCAGCCCCCCGCCCGGCACGGGCGCTCCGTT 31255 30 96.7 29 .............................C CGCCGCTGCGGCGCCACGTCCGGCCTGAT 31196 29 93.3 31 ..............-.............C. TGACGAAGGCGCTACTCGTCACGGACGACGC 31136 30 100.0 31 .............................. ACAACGACGGTCGGCCGCTGTTCCCGGTGCT 31075 30 93.3 31 ............................CT GGCGGGTGCAGAAGATCGGCCCGAAGAGCAG 31014 30 90.0 32 ...................A....A....C TGGCCGCCGAGGGCACCCCGGTCATCGTCGAC 30952 30 86.7 31 ..........T........A....A....T CACCGCCGAGACGGGGCCGGGAGGCCGTCAG 30891 30 86.7 31 ...........A............A...AC CCGCCACGACGTGGCCGAACAGCGGGTGTGG 30830 30 93.3 31 ........................A...C. ATTCGTTGCGGCATCTGACGCGGATAATGCT 30769 29 83.3 71 ..........-.....A.A.....A....C TGTCGGCCCGCTACGGGGGCATCGTCGCCGTCTGCTCCCCTGTCGGCTCCGCCTTGAGGTTGAGCCGGTGT 30669 30 83.3 31 TG.........C...C........A..... CGAACCACCCCACTGAGTACATGGCCGCACT A [30665] 30607 30 86.7 0 T......................AA...A. | C [30582] ========== ====== ====== ====== ============================== ======================================================================= ================== 13 30 91.3 34 CTGCTCCCCGCGCACGCGGGGGTGGTCCGG # Left flank : GGGAACCGACGACGCCGAGCGGTTCGCGGATTTCCAGGCGGGCATTTCCGCGCAGGACCTCGAAGACGCTCAGGTGGAGCTGGACGACTGGGCCGTGCTCGGCGTTCTCGACGCCGACGGGCGCATCCTCAGCGCCGGAAGCATGTACCCCTGGGAGGATGACTGCGTGCTCGCCGACATCGGCGTCCTGACGCTCGCGGACGCACGTGGTCGGGGTCATGCCCGGCGCCTGGTGCGCGCGATGTGCCGGTTCGCACTCGAGGAAGGCTACGAACCGCAGTACCGCTGCCAACTGGACAACGCCGCCTCGAACGCCCTCGCCGGTGCCGCAGGTCTCGCGCTCTTCGGGCGCTGGCAGATCGTGACGCCCGAGGTCGACGAGAACGGACCGGAGGACTGATGATGGCGGACGGGATGACGGGAGCAGCGCCGATGGAGAGACCGCTGAAGGACCGTGTCGAGGCACCGGCGAGAGTGCTGAGTACGGCAAGCTAGAAGCG # Right flank : CCCGCTTCACGCCAGTGGATGCAGCTCACCGGTAAGCGCCGCCAGCGCGGCGGCGATTTCATGGACTGTCGCTCTTACTTAGGCGAACGGCCGATAGCAGGGCGCGCTCCATGAGTTCGGCTGCTCTTCGTTCGGCGTCCGGAAGGACGTGGGTGTAGACCATTCTGGTCGTGCGCCCCTCGGCGTGGCCGAGCCGGTGTTGCATCACGTGCTCGGGCACGCCCCCGTCCGCCCCGGCGGTAGCCGACGTGTGACGCGCGTCGTGCAGAGCGATCACAGGCAGGCCTGCCGAACGGCACGCGAGTTCCCACTTGTCGGTGAAGTACTTCGGGTAGTACGGCTTGCCGTCCTCCCGGCAGAAGACGTAGCCCAGATCCTGATAGGCGATTCCCGCAGCGGCCTTCTCAGCCAACTGTGCTTCGTGGTGAGCTTCGAGGACCGCGACGACGAGTCCTCCGATCGCGATGGGGCGCGCACTCCTGCCCTTCGGGCTCTTCTCC # Questionable array : NO Score: 3.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:-1.5, 6:0.25, 7:-0.20, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //