Array 1 26684-25334 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLVO01000010.1 Escherichia coli strain MOD1-EC6529 MOD1-EC6529_10_length_179844_cov_61.6746, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26683 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 26623 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 26563 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 26503 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 26443 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 26383 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 26323 28 100.0 32 ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 26263 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 26203 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 26142 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 26082 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 26022 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 25962 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 25902 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 25842 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 25782 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 25722 28 100.0 33 ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 25661 28 100.0 32 ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 25601 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 25541 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 25481 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 25421 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 25361 27 92.9 0 .......................C-... | T [25342] ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGCTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 36311-35741 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLVO01000010.1 Escherichia coli strain MOD1-EC6529 MOD1-EC6529_10_length_179844_cov_61.6746, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36310 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 36250 28 100.0 32 ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 36190 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 36130 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 36070 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 36010 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 35950 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 35890 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 35830 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 35770 28 85.7 0 ....................T...C.CT | C,A [35744,35747] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //