Array 1 2206838-2205704 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018517.1 Streptomyces rochei strain 7434AN4 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 2206837 28 100.0 33 ............................ GACCGGCGAGGAGCTCCTGCGGAGCGTCCTACG 2206776 28 100.0 33 ............................ GCGGGCCGTGCTGCGGGTGGGCGGTGTGCGGGC 2206715 28 100.0 33 ............................ GTCCTCTCCACCTCCTACCAGCACACCGACACT 2206654 28 100.0 33 ............................ ATGGGGGCCTCTCGGGGAGCGGGGAGCGGGGAC 2206593 28 100.0 33 ............................ GGCCCTGGAGTACAGGGCCACCGGCAAGAAGGC 2206532 28 100.0 33 ............................ GTCGGCGGACTCGACGGCGAGCAGGCAGGCGCG 2206471 28 100.0 33 ............................ GGTGGGTATGGCGGTACCGGTGTTCGTGAAGAC 2206410 28 100.0 33 ............................ GACTCTGCGACCGGGGTCATTGTGAACTTCGCA 2206349 28 100.0 33 ............................ GGCTGCCGAGGAGGCCGAGAAGCTGCGCATCGC 2206288 28 100.0 33 ............................ GCAGCCATGGTCGACGCCGCCCTCGTCGCCGGC 2206227 28 100.0 33 ............................ GAGCCCCCTGCACCGGGAGAATCGGGTGATGAC 2206166 28 100.0 45 ............................ GAACGCGGCCAAGGCCAACGTCACCGGCACCGGCACCGGCACCCC 2206093 28 100.0 33 ............................ GGATGCCGAGTACCCGCTCATGTCGCCCGAGCT 2206032 28 100.0 33 ............................ GGCGCTGGTGCTGGCGACGCAGCTCCCGGACGG 2205971 26 92.9 33 ..................--........ GCCACGAGGCCACCTGGTCAGTCGCGGGGGTGA 2205912 28 100.0 33 ............................ GGAGGTACGCGAGACCGCCCGCGAAGAGCTGGA 2205851 28 100.0 40 ............................ GAGATCTGCGAGCAGAACCAGGGCGGCTCGGTCCAGTCGT 2205783 28 96.4 24 .........................G.. GGGGGTGCACCGGGCCGACCTGGA Deletion [2205732] 2205731 28 82.1 0 ........T...............CGAT | ========== ====== ====== ====== ============================ ============================================= ================== 19 28 98.5 34 GTCCGCTCCGCGCAGGCGGAGGTGAACC # Left flank : TGCCTTGAACGCATCCGGCACCTGCGCCTGGAACGGTGGCGTGATCTTCCCTAGATCATGCAGACCCGCCCACCACGCCAGCACCGCTCGCGCCGGGCCTACACCCAGCCCAAGCTCCCCCGCGACGCGCTCCCGTAACCGAGGGTGCAGCAGGACATCCCACAGCGCACCGAACACCGCTGCCACATCCAGCAGATGACAGATCAAGGGGTACGGATACGGCAGTCCCCGCTCCTTGCCCCACACCCGCACATCCACCTGGTCCGGGACCATTGCATCGCTCATGCCGAGAACTTCTAGCAGCAGCCACCGACAACACGTCCCCACCTGCGGAAATCCCCACCGCCGCCGCCATGCCGGAGATAGACTGACTTCTGTCACCGCCGTAGCGCGTCTCTCTGATACGCCGCCATTTGATCGAAGTCAGGGAGACTCTGATGCGCCGCAACAGCGTTGGTAAAGGAAGTGCCAACCCCTTCTAACGCCGCAGGTCAGGAAGT # Right flank : TTGCGCTCCGCGTTTATACGCGATGTTCTTCGACAGGACAGGCGCTTAGAAGGCGCCTGCTCTGTCCTCACGTTTCCTGGCCGTCGAGGTGCAGGTATGGGTGGGTTAGGGCAGATTCGCCGACAGCAGACACATTGAGTCCCATACGGACTGGATTAACTCGGCGAAGGAAGCAAACCTAGAGCGGTCTTGGGAAAGCAGAACCTGCTCTCTGCGCATCGACCGAACCGCGACAGGTGCGTCGCGGGCGCAACATAGCCGACGATCGCCGGTTGGCCAAACCGGCGCTTCTCCAGACCATTGAATGACCAGGGGACGCCGACGCGTCCCGATGTCTCGTGTGAGGAGTCATGTAGCTTGTCGAAGCTGGCAATAGACGAATCGTCCTTGCTCTCTGCGGACCACGTTCGCGCCCTTCTGGAGTGGATCCAGGAGGCATCTTCGGGGGCCATTTTCCCTTTCCTCGCCTCTGTGGCGGGCACCGCGCTTTCGCCGGGTGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAGGCGGAGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2217183-2216851 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018517.1 Streptomyces rochei strain 7434AN4 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2217182 28 100.0 33 ............................ GTTGTCCATTCCGGGCCGCCGCCCACGGGCGAC 2217121 28 100.0 33 ............................ GGAGACCGACATGCCGAGTGGTGGAGCACGGGC 2217060 28 100.0 33 ............................ GACGGCAGGCCCGCCTGCACCGACACCGCCGTA 2216999 28 100.0 32 ............................ GGATGGCCCGAGAACCTTCGGGTGATTCCGTC 2216939 28 100.0 33 ............................ GTCCAGCGCGGTCACGAAGAGCAGCTTCCGCGT 2216878 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GTCCGCTCCGCGCAGGCGGAGGTGAACC # Left flank : CTTCCTTCTTGTACGCCACTGCGAGCTCCGGGTAAGTGCGGTTGCCGACGAGGGCGCGACAACCTGGAATCGGGTGACTGGCGCTCGGTGGATGCCATGCGGGATCCTAGGTTCTTGATGATCGGCGGCGACCATTCGTCGTGGGCGTGGCCAGTTGACGGCAACGGCGGTTCACTTCGCCTGCAGGTGGACACTGACGACCATCCTGGCAAGCCCGGTGCCGCCGGTTCACCTCCACCTGCGCGGAGCGGACAACACGTCGTGGGGCCAGTCCGGCTGGGGCTACGGTTCACCTCCGCCTGCGCGGAGCGGTCAACACGGCCCACCTGCGGACTCCCTACCTTGCCACCGCTATGCCGGAGATAGTCTGACTTCTGTCACCGCCATGGCGTGTCTCCCTGAGACGCTGCGATTTGATCGAGGTCAGGGAGGCTCTGATGCACCGCAACAGCGTTGGTAAAGGAAGTTCCAACCCCCTCTGACATCGCAGGTCAGGAAGT # Right flank : CTGCCACGCGCGGAGCGGACGTCAGGGCCTGCCGGTATGCGGCCTGCTGGATCGGTTCACCTCCGCCTGCGCGGAGCGGACCCCTTCGTGGCCTGCGGTTCTATAGGGGCTTTGCGGTTTCTTGGCTTGCGGGGAGGCGTTGGAAGGCGATGAGGGTGAGGCCGTCGAAGTCGAGGGGGTCGCGGCGTTGGGGGCCGGCTGTGTGGAGTGTGAAGCCTTGTTCGTTGGCTGCGGGGTAGGCCAGGACGGCGCTTCCTTCGGTGAGGCAGGCGGTGAGGTTGTTCCAGAGTTCGGTGCGGACGCGGGCTGAGATGGTGCCGATGTAGAGGGTGGGGGTGACTTCGAGGAGCCAACGGGTGAGGGCGCCGCGCAGGTGGTCGGGGACGGCGGTGGCGGAGATGACGGTCATGGCGGGCACAGGCCGGGATGCTCCTGTCGTGGGTCAGGCGTGGTTGGTGCCGCCGGGGAGAGGTCCGGTGACGGGGTCCCAGAGGTCGACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAGGCGGAGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //