Array 1 574404-575289 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010103.1 Francisella tularensis subsp. novicida strain DPG 3A-IS chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 574404 36 100.0 28 .................................... TCTGTAGAAATTCCTAGTTTTTGAGATG 574468 36 100.0 28 .................................... GGCTCAAGTAATATCAATAATTTAGAAT 574532 36 100.0 28 .................................... ATTTATGTGATGACTGGTGTTGCTAATG 574596 36 100.0 29 .................................... ACAATTATATCCATCACATACCCCTCTAA 574661 36 100.0 28 .................................... TGTATTTTAGATAGGTTTCAGCAGAAAT 574725 36 100.0 29 .................................... AGTGCTTAAGAAAATCGAAAGTATTTGGG 574790 36 100.0 30 .................................... TATAATGAAAATACGATTATTACTTAGAAG 574856 36 100.0 32 .................................... ATTGTCAAAACATAAGCAGCTGCTTCAAATAT 574924 36 100.0 28 .................................... GTCGCTTTATCATCTTTATACTCCTTAA 574988 36 100.0 29 .................................... TTTATCTGCTCTCTGGCTACTTTCAACAC 575053 36 100.0 30 .................................... GCGTGGGTGTTGGGCTTTTTATTGCGTTAT 575119 36 100.0 28 .................................... CTTGCAAAGTGTAGTGTGTTACACCTTA 575183 36 100.0 32 .................................... ATTGTCAAAACATAAGCAGCTGCTTCAAATAT 575251 36 86.1 0 C........................A.A..A.T... | CC,T [575272,575277] ========== ====== ====== ====== ==================================== ================================ ================== 14 36 99.0 29 GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Left flank : GAATATGTAAGAGAATTTTATCGTGCCTTTATGCGAGACAAAGAAATTGCAGAGTATCCAATATTTTGTTATGAAACTAGGAGGGTGTATGTTGATAGTCAGTTATGATTTTAGTAATAATAAAGTACGTGCAAAGTTTGCCAAATTTCTAGAAAGTTATGGTGTACGTTTACAATATTCGGTATTTGAGCTCAAATATAGCAAGAGAATGTTAGACTTGATTTTAGCTGAGATAGAAAATAACTATGTACCACTATTTACAAATGCTGATAGTGTTTTAATCTTTAATGCTCCAGATAAAGATGTGATAAAATATGGTTATGCGATTCATAGAGAACAAGAGGTTGTTTTTATAGACTAAAAATTGCAAACCTTAGTCTTTATGTTAAAATAACCACTAAGTTCTTAGAGATATTTAAAAATATGACTGTTGTTATATATCAAAATGCTAAAAAAATCATAGATTTTAGGTCTTTTTTTGCTGATTTAGGCAAAAACGG # Right flank : TTTCTAAATTAGTATTTGCTAATATAACACTACTTGAGAATTTATTGGCTTATAAAAATGGATTTAATGCAGATGAAAGATAATGCTAGTAAAGCTTCTTCATTATTAAAAGCAATATCCCATGAGTCGAGATTATTGATATTATGCTTGCTACTCCGAAGAGAGATGACAGTAGGAGAGCTAGCAGAGTACTCTAGTTTGAGCCAATCGGCATTTTCTCAGCATTTATCAGTGTTGAGAAATAATGGTCTGGTCAAATGTAGGAAAGAGGCGCAAAATGTATATTACAGTATCAACGATCCTTCGGTAACAAAAATATTGGAGGCTTTGTACAGCATATATTGCGGTGATAAATAATTAAAAAATTTAAAGTTTATATTAGTAAAATCTAAATTAGATAAAGTTAAAATAAGGAGACTAAGATGAATAAAGTAGAAAAAATATCAGTAAAGCAATTTCTTGATCTACAAAAAAAAGAGAAGGTTAAGCTAATAGATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1292189-1292866 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010103.1 Francisella tularensis subsp. novicida strain DPG 3A-IS chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 1292189 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [1292196] 1292260 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTGCCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [1292285] 1292468 37 97.3 34 ............A........................ TGGTACGGAATAAAAGAGACTGTTTGCGATGTTA 1292539 37 97.3 36 ............A........................ ATTAGTTGCACAGGTTTATTCAGATACTTGTTTGAA 1292612 37 100.0 36 ..................................... CTATGAGCCTAACAACTGCAGGTTTGTAGATAGAAG 1292685 37 100.0 35 ..................................... TAGAACCAAAGACACTAGCATCTTGTATAACTACT 1292757 37 100.0 36 ..................................... CAGGCAAGAATATTTAGCTACTTTTGAGGAGGCTCA 1292830 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 8 37 93.9 54 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : TTGATAGTCATGTATATAAAGAAAGACATTTGATAGAGAATTTCTTTTCTAAAATTAAGCATTTTAGAAGAGTATTCTCTAGGTTTGATAAAACCATTTCCGTATATCTAGGCATGATAAAACTAGCTTGTACTTTTATTTGGTTACGATGAATATTAATTTTTGTGCACAGAACCTATTTTAAAGACTCTTTTATCTTGGTTAGTTTGAGCTTTTTATTTATACTTTATAAATACTGATAATCTCAATATTAGTTATGTTTACATTTTTGTTGTTAGCTATCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTGTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAACTGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATTAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAAGCTTATGAAAAATTATTTTTAATGAGT # Right flank : GAGCCAAAACAAACCTAGTGTTTGCAAGGCTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATTAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAGCAAAAATTTGCCACCTAAGTGGCTTTTTAGTTTGGAAATTAATATAACTTGTTTGTTTCTTAGCTCGATTACATCAAGATGGCTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCCGCCTTCAGTGACAATTAGAGATTTTACTATCAACGATCATTACAAAAGTTGTAATATTCACATTGTATACATTGATGATCCGATGCAGATGAGTCTGGCTTATTACCACTATCTAAAGTACTAAGGATATCACTAAGACTGTTGATTTAATCTGCAAATAAATTTATGAA # Questionable array : NO Score: 3.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-2.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : GTTTCAGTTGCTAAATTATTTGGTAAACTACTGTTAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: F [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //