Array 1 218871-218169 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATR01000053.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_b232 b2322_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218870 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 218808 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 218747 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 218686 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 218625 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 218564 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 218503 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 218442 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 218381 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 218320 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 218259 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 218198 29 96.6 0 ............T................ | A [218171] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236500-235130 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATR01000053.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_b232 b2322_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 236499 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 236438 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 236377 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 236316 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 236255 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 236194 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 236133 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 236072 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 236011 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 235950 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 235889 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 235828 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 235767 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 235706 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 235645 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 235584 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 235523 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 235462 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 235401 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 235340 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 235279 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 235218 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 235157 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //