Array 1 43672-42188 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNB01000003.1 Streptococcus suis YS64 Contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43671 36 100.0 30 .................................... GAGGTTTTCAGGAGACTAACAAAGAGCTCT 43605 36 100.0 30 .................................... CTGATTTTAACCAGTCACTTATCAATCAAT 43539 36 100.0 30 .................................... CTTTCTTAATAATTTCTTTCAATGTCATTT 43473 36 100.0 30 .................................... ATAACTGAGGAACGGGATGTAGCGATTGAA 43407 36 100.0 30 .................................... CGTCATCGTAAGGAGGTTTGAATGTTTGAA 43341 36 100.0 30 .................................... TCCATGAACGATTCGATGTGGATTTGCGTT 43275 36 100.0 30 .................................... TACTGACATCAAGCAATTCTTGCTCCTTGG 43209 36 100.0 30 .................................... TAAAAGATAAATTTGTGAGGTGCTAAATGA 43143 36 100.0 30 .................................... TTCCTCAACGAGCTCACCCTCGTTATTAAA 43077 36 100.0 30 .................................... TTACAAGAAAGAAAACGCACAATCACCAGC 43011 36 100.0 30 .................................... TGATTATTGAACGTTCGTGGGGATTTCCGT 42945 36 100.0 30 .................................... TGTATATCGCCCAACATTACCAGCAGTAGC 42879 36 100.0 30 .................................... TGGGTAGCGTTGGAGGAATTGGGATGACCG 42813 36 100.0 30 .................................... CTCGCTTGACCTCGTTGTCACGGCGTTTGA 42747 36 100.0 29 .................................... CGTTTCCAAGTGGAACACACAATCAACTC 42682 36 100.0 29 .................................... CGATAATCTATCTATCGCGAGACGAAGGA 42617 36 100.0 29 .................................... CTATTTCTTCAGCTTTACAACCATGATAC 42552 36 100.0 30 .................................... CAATAGGCAAACGCTGGATTGAGCATAAGA 42486 36 100.0 30 .................................... TAACTCAACAACAAATCAACATGCTAGCTG 42420 36 100.0 30 .................................... TGGAGGCTGATTAGCCATACTCTGTCCGTA 42354 36 100.0 30 .................................... GCCAACTCATAAAACTATTTAAAGGCTTGG 42288 36 100.0 29 .................................... CAGTAGGTCTCTTTACTATACCCATTTTA 42223 35 83.3 0 .......................T..T.-....TCA | T [42199] ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.3 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAAATTTAGATGATTACCTAACTTACGATTCTTTTGTGAGAATAGCACAGTATTTAGAGGAACTTAGTAATAAGTATCCCTATTTCAACACAATCTTGTTTCCTTCTCAAGAGGGCTATTTGTACTTGACCGAGGCAACGCTTGAGACTGTTAATATTGTGTCTGATAGAATTGAACACTACCCTGCTTTCACGTTTCTCTATACTCGCTATCAGCAGTCATATCCCTCAACTAGCCCACTAGGTGAAAAAGAATTTTTAAACTCTTTGAGAAAAATCAGTTCCTATTTATTCTCTTCAGACATTAATAGAGTCGTGAGCTTAGCAGACATAGACCTAGTAACTCTAAAGATAGTTAATTCACTTTATCAGTATGATATTAAGATGGTATATATGTATAAAGGAATATCAAGATTAGAGGAAAATTACCTTTCTTCCTAAATTTGACAAGTTTTTCGATAAATATTATAATTACGGAAGAGAGTACAAAAACCATTTGAG # Right flank : TAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTTAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCCACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTAGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGGGACTTCAATGGGATTAAAGGCGGTGGTGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGTAAGGACTGCATCTGGATTGTGGATGAGTCTAAGGTGGTAGATACCCTAGGTGCCTTCAAGTTGCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //