Array 1 629857-636222 **** Predicted by CRISPRDetect 2.4 *** >NC_012108.1 Desulforapulum autotrophicum HRM2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 629857 37 100.0 34 ..................................... TCCTCACAGGGAATAGATGTCGGGTTTTCTGATG 629928 37 100.0 36 ..................................... CAAGGAGTTCAAAGCCGAGTTGTTCCGCAACGTCAA 630001 37 100.0 37 ..................................... GTGAGGCTGATCGACTGAAACTGAGGACGAAAAAACA 630075 37 100.0 37 ..................................... TAAGGTGAAAGCGTCCGCAAAACGTCCGCAAAATGAA 630149 37 100.0 35 ..................................... ATTTTGCTCCTATCCCTGCAACAGCCATTTTTATT 630221 37 100.0 36 ..................................... TAAAGACCGCCATAATAAGAACAATCAGATATACTT 630294 37 100.0 36 ..................................... ACGTTGTAATTGAAAGCATAGCGGACCCCATCAAAT 630367 37 100.0 37 ..................................... GTGTGGACGAGGCTCACCGGTGGTTCGGAGAAAAGAA 630441 37 100.0 35 ..................................... ACGTTGTAATTGAAAGCATAGCGGACCCCATCAAA 630513 37 100.0 36 ..................................... AGTAAACCATCACCGTCATCATCGTGAAAAGTACCC 630586 37 100.0 35 ..................................... AACTTTGGGTGTCGTCAATCGGGTTTGACCAGGCG 630658 37 100.0 34 ..................................... CCGAGTGGGCAGTGGTCTCTGTTCATCGGTGTGG 630729 37 100.0 35 ..................................... TTGAATCAGCAGACTGAGCAAACGAGTGAAGGTTT 630801 37 100.0 35 ..................................... CCCAGACCGCATTGGATGCCGGAGCAGATATTTTA 630873 37 100.0 36 ..................................... TTTCCAGCGGGGCCAACTCCATGGAAATCTATGGAA 630946 37 100.0 35 ..................................... TTGAATTGCTGAAACTCAATAAAACCGACATTTGT 631018 37 100.0 34 ..................................... TAGGGAATCAGGCGGTAATGCAGATGGCGCTTTT 631089 37 100.0 35 ..................................... AAAGACGGCAGCCTGATTGAAACCAGGGCGGCTGG 631161 37 100.0 36 ..................................... ACAAAAGAGAGCACACCACCCAATTGCACGGCCAAA 631234 37 100.0 36 ..................................... GTCGTAGACTTAGCATTCTTCCGGGGGATCTCTCCA 631307 37 100.0 35 ..................................... CATAAGGGTTGCGATTGCGTTGTCGTTGCGGGGTG 631379 37 100.0 35 ..................................... CATAACGTGCTCGGTATCCTTTAGCGAGATTGGGG 631451 37 100.0 35 ..................................... AAATATTATATGTGGTGACGGCCTGCTGTGCGTCC 631523 37 100.0 35 ..................................... GAACTTCCAGATGCTCCAGAAGATGCAAAAGAAGT 631595 37 100.0 36 ..................................... TTTTTCATCATCCTATGTTGAGGATGGCGCGGGACG 631668 37 100.0 35 ..................................... ACCGTGAAACCGGAGTCAACCTGCTTAAAGAGATG 631740 37 100.0 35 ..................................... TTGGTTTAATTTTGTTCTACCAGACTCCAAAATTG 631812 37 100.0 36 ..................................... GCCGTCCGCAAAACGAAAAAGGAGAAAATAAAACAA 631885 37 100.0 37 ..................................... CGATTGCCCAGTACGGGGACGACCTATCCGCAGCAAT 631959 37 100.0 36 ..................................... ATGATTGTCAATGAATCGCATGGATCTATAGAAGTA 632032 37 100.0 36 ..................................... AGGCACAGTCTATATCTTCCTCCATCTTGCTTGCGG 632105 37 100.0 36 ..................................... TTGATCCCATTACCAAAACCCTTGTAAAACCCCTTG 632178 37 100.0 37 ..................................... TCGATTACACCATTACCGGGTGGGAGGGGGTTACGGA 632252 37 100.0 36 ..................................... CAGGACAAGCTGATATCTCAGGATTGTTGTCTGTTT 632325 37 100.0 35 ..................................... TAGGTCTTGGGAAGACTGCAAAGGGTGCCCGGTTT 632397 37 100.0 36 ..................................... CCTGGGATATCTTCCGGGTTGCGTGCGGCCCTGGCT 632470 37 100.0 34 ..................................... AATCGAACTTATCTGCGTCCATATGGACTCTAAA 632541 37 100.0 36 ..................................... ATCCGTCATCACGCTTTAATACTGATACCTGTGTCC 632614 37 100.0 36 ..................................... TATCTATTGCCCATTATGTGGGTATGAAGACTTTGA 632687 37 100.0 34 ..................................... TTCTCACGCATCCTATTACCTGCTGACCGAAAAT 632758 37 100.0 36 ..................................... AGCACAACTTATGCCAATGGGGATGCAGTGGCTTGT 632831 37 100.0 36 ..................................... TCAAACGCGAGCTCGAAGAGGCGTTTGAAATGGATG 632904 37 100.0 34 ..................................... ATTTTGCCCTTTCAAGCTCGACCTCAGCCCGTTT 632975 37 100.0 35 ..................................... ATCCATTGTCGGTTAGATTGTGGCCTATTCCTATA 633047 37 100.0 36 ..................................... CAGCGATCAGAAAACCATTGCCGAGCTATCATATAT 633120 37 100.0 35 ..................................... AGATGACTCCGGCTGAGGGGCAGGTTCTATTTTAT 633192 37 100.0 36 ..................................... TTATTGTACAGAGGATGCAGCGAAAGCCCCATTGAT 633265 37 100.0 35 ..................................... TTGTAACCATACCGGGGGCAGGGTCCGTCAATATG 633337 37 100.0 34 ..................................... TACTTATATCACTGCTGCCAATAATGGTGCTAGG 633408 37 100.0 38 ..................................... ATCATATAATTGACTGCATGTCTTGCGTCATTAAAGGG 633483 37 100.0 38 ..................................... AAAGAATCAATCACAGTAGTAGAGACATCGGTCATCGT 633558 37 100.0 36 ..................................... CGTTGGTGATTCAATCGGTAAAGCTGTTGACGGTAA 633631 37 100.0 35 ..................................... TTGACGACAAAATAGACTTAGGAACCACATTCTTT 633703 37 100.0 35 ..................................... TTGACGACAAAATAGACTTAGGAACCACATTCTTT 633775 37 100.0 37 ..................................... TCGAAAAGTCTCTGACACTCTTCAATGCAATATATGA 633849 37 100.0 36 ..................................... AAAAAAAACCCCACCCCGGCGAACCAGGGCAGGGCA 633922 37 100.0 35 ..................................... AAACCATAATCAATTTGATTGACAAAAAAAATGGG 633994 37 100.0 36 ..................................... CAAAAACGAGATTGCGAAGATATGAAAGCGCTCCTC 634067 37 100.0 35 ..................................... CAACAACACCGAATCAGAAAAACGGCGATACTATG 634139 37 100.0 37 ..................................... TAAACACATCCACCAGATCAAACACAACCGTCCAGAT 634213 37 100.0 37 ..................................... AAGGGTATAAGTGCCGGGCTCGTAATTCTCCACTCCC 634287 37 100.0 38 ..................................... TCAGAAATGAAACAGGGTTTGAGCAGACGGTTTCAGCC 634362 37 100.0 35 ..................................... TATGCATCCCCTTCTTTGCCTGTTATTTTGAGCCA 634434 37 100.0 39 ..................................... AAGTGATTATTGTCGGTGCCGGGTTGGTTTCCGACGCTT 634510 37 100.0 36 ..................................... CGGCCTCAACAACGGCTGCGATTCTGTCGGCTCTGA 634583 37 100.0 36 ..................................... TTTTAAACTTGGTGCGAATCCCGTCGAGGTCTACGA 634656 37 100.0 38 ..................................... CCCTGGGGTGGGGACTGTTCTCTGCAAGCTCAATCACC 634731 37 100.0 35 ..................................... TCTGTATTTTTTTCATATTCAAATAGTAACCTCCT 634803 37 100.0 36 ..................................... AATTTCTTTCACGGAATGACGCAAACGGATGGAATT 634876 37 100.0 35 ..................................... TTTTGAGCCACATTCCCCCAAAAGATGCTTCTATT 634948 37 100.0 35 ..................................... TTTTGCTGTGTCGGGTCAGCCGGGGCTGATCAATG 635020 37 100.0 37 ..................................... TGGGAAAGTCTGACACGAACCAAGGAGACAGAACGAT 635094 37 100.0 39 ..................................... CCTGGCGCTGGATCGCAAGGCGCTGCTGGCGGGTGGCCA 635170 37 100.0 34 ..................................... TCGCCACTGACTGATGAGCAGGAGAAATATCTGG 635241 37 100.0 36 ..................................... TTTATGCGCAGAGAATCAAACATCCCGAGCAAATAC 635314 37 100.0 36 ..................................... TCCGACCTCTGCGGCGTGGCCGTCACGCCAAGGATT 635387 37 100.0 34 ..................................... TTTTGCTGTGTCGGGTCAGCCGGGGCTGATCAAT 635458 37 100.0 35 ..................................... TTTTGCTGTGTCGGGTCAGCCGGGGCTGATCAATG 635530 37 100.0 37 ..................................... GTCAAAACTCCAATGCCAAACTCAGTGATAGACGCAG 635604 37 100.0 35 ..................................... ACTGTGGGGCGCTTTGGGCAGAGTTGACGTTGTGG 635676 37 100.0 36 ..................................... TTTTGGTGGTGTGGGTTGTGGGTAAGTTACTGAAAT 635749 37 100.0 37 ..................................... CCAGAAACCTGAACATCAATACCCGTTAAAGCGTCAG 635823 37 100.0 34 ..................................... AGTATGAGTCTCAAGCTGACGATCTGGATGGTAT 635894 37 100.0 37 ..................................... ATCGATCTATCACACCGCCTTTGGCATACCCACCAAG 635968 37 100.0 36 ..................................... ATGTATACAGGGAGCTGTCAGCCCTTAAAGATGAAA 636041 37 100.0 37 ..................................... GATTTTATGACGGAACCAGGCCAGCAACCGGAGCATC 636115 37 100.0 34 ..................................... TCGTCACAATACCGGGGTCAGGCTCCGTCAATAT 636186 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ======================================= ================== 88 37 100.0 36 CCTGGAATGCCTGATCCACGACAACAAGGATTGAAAC # Left flank : AATTATAGAACGCATAAGATTCAGGCTATTTGTTATACCTTGCTGATTGAAGATAATTATAAACGTAAATCCCGGAAAGCGTTTATCGTTTATACAAGGTCAAAAAACAAGTTGATTGAATTTGATTTTACCGATAAAGACAGAGCTGAAATAAAAAGTATGATTGAAAACGTTTTGCATATTATCAAATCAGGATTTTTTCCTAAAAAAACAGCTTCCCAAAAGCGATGTTCAGATTGTACCTTTAATAAAATATGTGTGTGAAATTGTAGTATGTCCATTATAGGATAGAACAGTGAATATTATGCGTTTTCGTAGTCTGAAAATATTTCTTTATTGTTTGTTTTTAATAAAATAAGATATAAAATCAATTCGTTTAGGTCCTATTGGTGGGTGATAAATGTGGAATACCTGTATGCATTATATTCTAATAGATAAAAAATTGCTCTTTGAAAATTTGTATAAACATTTGTTATTAAAGATAGATATAACAGGATGAA # Right flank : ATTTTTATACACTCTCGAAAGAGAATGGAACCAAAACGTTTAAAGGGTGTTGAAAAAGTTAAAAATTTTGGAAATCAGACATCTCATAACAACTCAACTCATCTCAACTTGGCTTGTAACCTTATTTCTTTTGAATGACTACCCGTTTTTTTTTAAACAAGTCCATTTGATCATCTTTTTTGTTTTTTTCCCTTTGTTTTTTATCGTTACCATCATTTCTATCCAGAATGTGGTAATTGTTGTAACTTTGGATTGACTGGCCTTTAGCCATTGGGCAGATTATCTGGACAAAGGAACAGACGGTCAACGTCGGCTACACAGGTTCCGGTCACCCTATTCCCGTGGGGACTTTCAAATCCAGCCGCATCTGCGACGGATTTTCCCTCGCAGATGGTATCGGCTTCGGGTGGGGGCCCCTGATGCCCTACAAAGGCTTCTCCTACACACATATTTAAGGTGTTATAGATTCCCACCACGGCCATCGCCATAAAAAAAATGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGGAATGCCTGATCCACGACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //